RNA id: LOC110532260


Basic Information

Item Value
RNA id LOC110532260
length 1087
RNA type mRNA
GC content 0.57
exon number 10
gene id LOC110532260
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35433794 ~ 35694776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGTGAGCAGCCTATCTCTGCCCCACTGCCTGCCTGAGACTGTTCATGAGGCCTTGTTTCGTCACAttaacaagaggaatacctacttTGACCCACGGCAGGAATTCACAATGGAGGATGTGCCGGTGAATCCGAAGCGTTACGACAGTAACACAGCAGCCCTGGAGATCCTGCAGGGTTGCAACCTCTCAGACAGGGTGGTCCTCATCACCGGGAGCAACTCTGGGATCGgtTTTGATACAGCCAAGTCATTTGCCCTCCATGGGGCCCATGTGATCCTGGCCTGTAGAAACGTCTCCAAGGCTAGCTAGAATGTAAATAggctGGCTGAGGACTGGCACAAGGCCAGGGTGGAGGCCATGAGGTTGGACCTGGCCTCTCTCCGCCGTGTCAGAACCCCCTCCTTATACTCCATCCCCAGCAACTCCTCCAACCCACCAAGCCGGGGTCTCCTGCCATTCCACATCCTGATATGTAATGCAGCAGTGTGTACCCAGCCCTGGCATCGGACGGAAGATGGCCTGGCAGATCTGCCATCAAGGTCATGTCCTGTTGGTGCAGTGTCTACAGGAAGTGTTGCGATGCTCTGACCCAGCCCGTGTGGTGGTGTCCTCTGAGTCACACAGGTTTACAGACCTGCTGGACCAGTCTGGTAAGGTGGACCTGGCTGTGTTGTCTCCTCCTCCCAGACTACTAGTCCATGCTGGCCAACAACCGGGCCAAGCTGTGCAACCTCCTGTTCTCCAATGAGCTCCACCGACGCCTCGCGCCCCACTGTGTCACTGCCAACGCAGTGCACCCTGGGAACTTGATGTACACGGCCATCCATCGTACATCGTTCTTCACCCTGGCTTGCCCATTCACCAAGTCTATGCAACAGGGGTCAGCCACCACAGTGTACTGTGCAGTAGCTCCGGAGCTGGAGGGTTTTGGAGGCATGTACTTCAACAACTGTttcttctgcctaccctcccccAGCCCGAAGACCAGGCCACTGCAGCCAGCCTGTGGGAGCTAAGCGAGCGCCTGGTCTCAGAGAGGCCTTCGGGCCAACAGGCCGTCTGATGGACATTCCCACTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42877 lncRNA downstream 10291 35424240 ~ 35424504 (-) True G37901
TU42200 lncRNA downstream 121740 35312819 ~ 35313055 (-) True G37329
TU42193 lncRNA downstream 134364 35300178 ~ 35300431 (-) True G37323
TU42192 lncRNA downstream 135176 35299333 ~ 35299619 (-) True G37322
TU42058 lncRNA downstream 323500 35110630 ~ 35111295 (-) True G37196
TU43027 lncRNA upstream 25459 35720235 ~ 35720521 (-) True G38044
TU43032 lncRNA upstream 29042 35723818 ~ 35724185 (-) True G38046
TU43035 lncRNA upstream 29532 35724308 ~ 35726101 (-) False G38047
TU43034 lncRNA upstream 29900 35724676 ~ 35726101 (-) True G38047
TU43040 lncRNA upstream 37566 35732342 ~ 35732680 (-) True G38049
XM_021597707.2 mRNA downstream 118603 35313953 ~ 35316192 (-) True LOC110520384
XM_036973075.1 mRNA downstream 118770 35313953 ~ 35316025 (-) False LOC110520384
XM_036973693.1 mRNA downstream 118859 35313953 ~ 35315936 (-) False LOC110520384
XM_036989454.1 mRNA downstream 147343 35286541 ~ 35287452 (-) True odf3b
XM_021599989.2 mRNA downstream 148978 35281285 ~ 35285817 (-) True LOC110521966
XM_021600073.2 mRNA upstream 47874 35742650 ~ 35749548 (-) False LOC110522006
XM_021600080.2 mRNA upstream 47874 35742650 ~ 35749578 (-) False LOC110522006
XM_021600087.2 mRNA upstream 47874 35742650 ~ 35749585 (-) False LOC110522006
XM_036976665.1 mRNA upstream 47874 35742650 ~ 35749598 (-) False LOC110522006
XM_036976657.1 mRNA upstream 47874 35742650 ~ 35749599 (-) True LOC110522006
TU42180 other downstream 156790 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1053563 34341562 ~ 34381232 (-) True G36196
TU40852 other downstream 1072059 34277700 ~ 34362736 (-) True G36141
TU40263 other downstream 1566750 33867558 ~ 33868045 (-) True G35628
TU39914 other downstream 1982382 33442368 ~ 33452413 (-) True G35299
TU43028 other upstream 26664 35721440 ~ 35722056 (-) True G38045
TU43851 other upstream 675318 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 813762 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 2021764 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2430504 38125280 ~ 38125725 (-) True G40732

Expression Profile