RNA id: XM_021600080.2


Basic Information

Item Value
RNA id XM_021600080.2
length 1535
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110522006
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35742650 ~ 35749599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACGTGAAGGTTTAAAATCCCGGGGGAGGGAGAGCATCGCATGTCCTCGCCCACGGTAAAGCATGGCTCCTCAAATATCACCCTAGTGAGGCGTGAACCAGCACGAGCGGTAACATGGCCACCTATCACCAGATACCTGATGATGAGAAGGGGTATGAGTTGGACCTCTTCTGTGTCCCCAAACACTATGAGGAGGATTTAGACCGGGTCATCATCCCTCATGGACTGATCATGGACAGgactGAGCGCCTGGCTCGTGATATAGTCCGGGACATGGGGGGACACCATATAGTAGCACTGTGTGTTCTCAAAGGAGGTTATAAATTCTTTTCCGACCTGCTGGACTACATCAAGGCCCTAAATCAGAACTGCGATAAGTCTGTCCCGTTGACTGTGGATTTCATTAGACTAAAGAGCTATTGCAATGACCAGTCTACAAACAGTGTCAAAGTTATTGGAGGGGATGAGCTCTCTACTCTAACGGGGAAGAATGTTTTGATAGTTGAGGACATTGTGGAGACTGGGAGGACTATGGAGACACTGCTATCACTGCTGAGTGAATGCAATCCAAAGATGGTCAAAGTGGTCAGCCTTCTAGTTAAGAGAACACCAAGGAGTTCAGGATACAGACCAGACTACATGGGGTTTGAGGTGCCTGATTGGTTCCTGGTGGGATATGCCCTGGACTACAACGAGTATTTCAGAGATCTCGGTCACATCTGTATACTGAACGAGAAAGCAAAGGTGAAGTACAAAGTGTGAGTTGAAGAGGAGGCAATGGACAGATGGATGAACCACTTTGGATGAAACACTAGGaaaattgagatttttggggTTCTgaaccaaatgtttttttttatttattttttactcatgGATCCTACTTACATACTTAATAGAGCCCCACGGTGGTGTCATAATACCTATATAatctaaaggtcaatcagataaATGGTTCCAATTggttttccaccattcatttttcccatagggaattttaaaaacaattcaaataagggctgtgtttcgtgtaggctcaCCCCGGTGTGATGTTTAGATACCGTTTGGAACCACTTTTTTGTTTGGCCGATggatttaatgggtattatgactcgtACATTGGTACTCTATGTGAACACATGGATTGTGAATTCACTTTGCAAGATGCTCTTTGAGAAcatttttatttcttattttcaaaATGATTGTTGCCCTGGAAGGAGTGGGATGAGTAATGTGTTTTTAAGTAGAGGAGGACTCGTGTAAAGATGGTTATGGGAGATATTACACTATTATAATttcaatgtattttatatattatCTTGGGGCCTCGAAGGCCTCTTAGTCTGATTACGTTAGTAATAGTGAAcagtggcgacctgtcattcagggtaGGTGTGGCAGAGCCCCACTTGTTTTAAGCCCCACTTGTTTtaagccccacctgttttgagccccacctgttttagGGGGgattgcctgttttgcatgttattttgtcaTTGATACGTGTCAtcagtttgtaaacaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43050 lncRNA downstream 147 35742286 ~ 35742503 (-) True G38059
TU43041 lncRNA downstream 7661 35734776 ~ 35734989 (-) True G38050
TU43040 lncRNA downstream 9970 35732342 ~ 35732680 (-) True G38049
TU43035 lncRNA downstream 16549 35724308 ~ 35726101 (-) False G38047
TU43124 lncRNA upstream 113247 35862825 ~ 35863462 (-) True G38126
TU43138 lncRNA upstream 139009 35888587 ~ 35891659 (-) True G38139
TU43099 lncRNA upstream 142932 35892510 ~ 35899485 (-) False LOC110522154
TU43101 lncRNA upstream 142932 35892510 ~ 35899652 (-) False LOC110522154
TU43103 lncRNA upstream 142932 35892510 ~ 35899652 (-) False LOC110522154
LOC110532260 mRNA downstream 47874 35434795 ~ 35694776 (-) False LOC110532260
XM_021597707.2 mRNA downstream 426458 35313953 ~ 35316192 (-) True LOC110520384
XM_036973075.1 mRNA downstream 426625 35313953 ~ 35316025 (-) False LOC110520384
XM_036973693.1 mRNA downstream 426714 35313953 ~ 35315936 (-) False LOC110520384
XM_036989454.1 mRNA downstream 455198 35286541 ~ 35287452 (-) True odf3b
XM_021600041.2 mRNA upstream 727 35750305 ~ 35753348 (-) True LOC110521997
XM_021600298.2 mRNA upstream 142929 35892507 ~ 35914512 (-) False LOC110522154
XM_036976727.1 mRNA upstream 190164 35939742 ~ 35961413 (-) True cax2
XM_021600276.2 mRNA upstream 221753 35971331 ~ 35982648 (-) False armc10
XM_021600283.2 mRNA upstream 223825 35973403 ~ 35982887 (-) True armc10
TU43028 other downstream 20594 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 159042 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 301322 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 464645 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1361418 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 620516 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 758960 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1966962 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2375702 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 2437910 38187488 ~ 38191736 (-) True G40768

Expression Profile