RNA id: TU43145


Basic Information

Item Value
RNA id TU43145
length 2391
lncRNA type read_through
GC content 0.41
exon number 3
gene id LOC110522092
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36005053 ~ 36045196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataagtttaatgctagctagcaacttaccttggcttactgcatttgcgtaacaggcgtaaactccttgtggagtgcaacgagagagaggcaggtcgttattgcgttggactagttaactgtaaggttgcaagattggatcccccgagctgacaaggtgaaaatctgtcgttctgcccctgaacgaggcagttaacccactgttccttggtaggccgtcattgtaaataagaatttgttcttaaccgacttgcctagttaactaaaaATGGCTCTATTTAAAATGGGGCATTAGTCTGTAGGCCTTGATTTACTGCAGGTCTACTCAAACTTTTCACCCATACTGTTTATGCCATTTGCACTCCCATTGTGAGTCAATCTGAATCCATTTCATTTTGAGAGCACACAGCAGAACAATCTCTGCCCACATTCCTCTTGCTATTTCCCACAATTATATTAAGATTTTGCCTTTAAAAAAATACTGAACAAACTGTCAAAGCATTTAGGAGCCCTGCTCCTTTCCCAAACATAGTCATGGCCCAGGAATATTTATTTGGCAAGatgtttgattttttttaaaaagcataGTAATCTCTGCCAAGAAATACGCCTTGGTGCCATAGCTACTCTGTAACTGCTAGATTCCTACAGAATGGTCCCAGagacaaaacagtcctgtataaTACTATTATAGGTACGCATTTATTTTATATGACCCATTTCCTAGCATACCCCCACACTAAACATGAACCACTGCTGATTAGTTTCCCTGTGGTTACAACACCCCTGGCCCTACAAATCAAAAACAAGGTCACTAAAAATGTCCTTTGCTAGCAGACATAAAACATACAGGGGTACTTGTTATTATGGGGTAACTGCTTTCAGAAATGGGTCCAGTGACACTATCATCCAGAGAACGAGAGCCATTCCATCCACATAAACccaattcaaaataaaataaaataaagtgcgCGAACGCTGGAAATAGAATGCATATAGTGTGTGATGACGGCCCATGTACAATTAGCACAAGATGCTGCGCGGTGAAACACCACTTCCCATTCATTTCAATGGGGGGGAAAGCGGTGAGAACCGGAGAGGTCGTGGGTCCTTTGGGCGGTGCAAAGGTGGCGTGGGAGGCGGTGAAAAATAACTTTTTCCCAAATGTATGGAAAGTCAGCAGCggtgaccaatcatatcgagtggctCCCATGACGAATTTGACACTGTGCGACCCAAGGCTGGAGACTTTCTTTAGCAAAGACGGCTGACAAAAATACTAggatggaagcaaatGGCACTAAAACTCCTCTCAGCCTCTACAGAGGAGGAAGGGACGACCAGCAGAAGCCTTAATAAAGCTTCCACTTGACTGAAGAGACCTCTGGCTCCATTTCCTGAATAATGCTAGCAACAGCCGAGCTCATTTGATATGTGTAATTAGCCCCAAACATGGCCAGCTGCACCTGCAGTAGTCTTGAATTAAATTCAGGATACTCATCTACCACCTTGTCCATGTCTCCGCGTAGCAGCACATTTTCAAGCTGCTGCAGCTTGTGGAATCCAGCTTGATCAAACCTCTAAATTGAGTTTTCACTGTGTCCAAGGCGTTGTAGAATTGGGCTCTGTACAGACTGGGCATCCGGATGGATATGGACCACAGCCTGACTGGTGTAACGCTTTGTAGGCTTGCGGATAGAAGACTCTTAACCATCAATATTTGCACGATCTGATATCTCCGTCTTGGTGTTGTTCCTAAGACATAATGTTTCTCCTGGACCATCATTGCAACTGACCTGTAGTTAGTTGGTTACCCCAGTCCAAAGACAGAATATTCCCTTGCGCCCCACCCtttgacctaaccctaacctcaggTTAAGACACAGGTGCCAGCCACTAAGCTCAGTTGTGCCAACATTAATTATGTCGTAGGAACAACACCAACATAGAGATATCAGATCAGTCATCAATATTTGCTCCTTTTCTCACTCACCTCCATGTCACCTGCTCTCCCTGCCCTGTTAGCATCCTCATGCTTTCTCTTTACTATGAATGCACCAGTGACCATGAAATAAATatcagtaaatcaaatcaaatttatttatatagcccttcgtacatcagatgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacaagtGGTGTTTCTTGCCCTGATGTTCAGGAATGGATTACTAACCATTTCTGATCTGAATGGCAATGATTATTATATCAAGAAACATTGACTCCTCTTGTGCTACTGTATACTTTTATCATCTGTTTGTACTCATTTTCTCAACATACTTTTCTTTTCTGAGGTCCCAAAAAAACTTTCAACAAAACGAATGTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43117 lncRNA downstream 61786 35942686 ~ 35943267 (-) True G38119
TU43150 lncRNA downstream 62449 35942360 ~ 35942604 (-) True G38147
TU43101 lncRNA downstream 105401 35892510 ~ 35899652 (-) False LOC110522154
TU43103 lncRNA downstream 105401 35892510 ~ 35899652 (-) False LOC110522154
TU43099 lncRNA downstream 105568 35892510 ~ 35899485 (-) False LOC110522154
TU43241 lncRNA upstream 61408 36106604 ~ 36107897 (-) True G38224
TU43246 lncRNA upstream 63202 36108398 ~ 36108872 (-) True G38229
TU43288 lncRNA upstream 145967 36191163 ~ 36191567 (-) True G38269
TU43239 lncRNA upstream 181506 36226702 ~ 36231191 (-) True G38223
TU43339 lncRNA upstream 235152 36280348 ~ 36281267 (-) True G38314
XM_021600283.2 mRNA downstream 22166 35973403 ~ 35982887 (-) True armc10
XM_021600276.2 mRNA downstream 22405 35971331 ~ 35982648 (-) False armc10
XM_036976727.1 mRNA downstream 43640 35939742 ~ 35961413 (-) True cax2
XM_021600298.2 mRNA downstream 90541 35892507 ~ 35914512 (-) False LOC110522154
XM_021600041.2 mRNA downstream 251705 35750305 ~ 35753348 (-) True LOC110521997
XM_021600111.2 mRNA upstream 21750 36066946 ~ 36070858 (-) True LOC110522040
XM_036989478.1 mRNA upstream 29754 36074950 ~ 36080429 (-) True LOC110532269
XM_021600311.2 mRNA upstream 74075 36119271 ~ 36120989 (-) True tmem60
LOC110522098 mRNA upstream 76474 36121670 ~ 36131381 (-) True LOC110522098
XM_036976802.1 mRNA upstream 95855 36141051 ~ 36189704 (-) False LOC110522050
TU43028 other downstream 282997 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 421445 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 563725 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 727048 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1623821 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 324898 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 463342 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1671344 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2080084 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 2142292 38187488 ~ 38191736 (-) True G40768

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU91583 True 821 lncRNA 0.53 2 NC_048565.1 74225622 ~ 74226757 (-)
bowfin (Amia calva) TU91583 True 230 lncRNA 0.38 1 CM030128.1 34450155 ~ 34450384 (+)