RNA id: XM_036989478.1


Basic Information

Item Value
RNA id XM_036989478.1
length 561
RNA type mRNA
GC content 0.56
exon number 2
gene id LOC110532269
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36074950 ~ 36080429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGGTGGGTCTTTGGCATCCTCATGCACCCTCTCTCGCCTTCTCTTCTCTCAGAATTCTTATAGCTCAGGATAGCGATGAGGTTGGCTGTGCTCTGCGTGTGCGGGACCCTGCTGGCCTTCTCTACGCCCCCTGGGAACTATGCAAACCTCAGCAAGGGAGACTTTAATTGGGGTACAGATTCTGGGAGCTGCTTGGTAACTATAAAGCCTGCAGGGAAGTGTGGGGGAGAGGGGATGGACGAGGACGCATGCCCCTACCGAGTGACCTTGCCTCCGCTGGACGTCATGCTGCCCCGGCAGCTCAGGGAATTGGAGAGGACGGTGAAGGAGGTGCAGAGGCTAAAGGAGACCGTGGAGCAACTGAAGAGAGCCTGCATGGAGTGCAGGATAAGCCAgatggagcgggagagagagaggctgggggacagagagagggagaaagaagagaaggagaaggtgagatGCTGTCCTAAAGCCCAGTCCACCCAGCCCAACCAGCTCAACAAGCTCAAACCCAATGACCTATCCAAGAACTGGCTCAACTTCAACCAGCCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43145 lncRNA downstream 29754 36005053 ~ 36045196 (-) True LOC110522092
TU43117 lncRNA downstream 131683 35942686 ~ 35943267 (-) True G38119
TU43150 lncRNA downstream 132346 35942360 ~ 35942604 (-) True G38147
TU43103 lncRNA downstream 175298 35892510 ~ 35899652 (-) False LOC110522154
TU43241 lncRNA upstream 26175 36106604 ~ 36107897 (-) True G38224
TU43246 lncRNA upstream 27969 36108398 ~ 36108872 (-) True G38229
TU43288 lncRNA upstream 110734 36191163 ~ 36191567 (-) True G38269
TU43239 lncRNA upstream 146273 36226702 ~ 36231191 (-) True G38223
TU43339 lncRNA upstream 199919 36280348 ~ 36281267 (-) True G38314
XM_021600111.2 mRNA downstream 4092 36066946 ~ 36070858 (-) True LOC110522040
XM_021600264.2 mRNA downstream 27367 36037537 ~ 36047583 (-) True fam185a
XM_021600198.2 mRNA downstream 42771 36005502 ~ 36032179 (-) False LOC110522092
XR_002473256.2 mRNA downstream 42772 36006069 ~ 36032178 (-) False LOC110522092
XM_021600283.2 mRNA downstream 92063 35973403 ~ 35982887 (-) True armc10
XM_021600311.2 mRNA upstream 38842 36119271 ~ 36120989 (-) True tmem60
LOC110522098 mRNA upstream 41241 36121670 ~ 36131381 (-) True LOC110522098
XM_036976802.1 mRNA upstream 60622 36141051 ~ 36189704 (-) False LOC110522050
XM_036976806.1 mRNA upstream 60622 36141051 ~ 36189706 (-) True LOC110522050
XM_021600252.2 mRNA upstream 151058 36231487 ~ 36234308 (-) True LOC110522124
TU43028 other downstream 352894 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 491342 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 633622 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 796945 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1693718 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 289665 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 428109 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1636111 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2044851 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 2107059 38187488 ~ 38191736 (-) True G40768

Expression Profile