RNA id: XM_036976806.1


Basic Information

Item Value
RNA id XM_036976806.1
length 8767
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC110522050
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36141051 ~ 36189706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGGTGGTGACAATGTACATGTTTCCGTGTAGTTCGCCAATAAACCCAAAGAAGAAGAATCAACGCTGCCTGTTTGTGTTTGGAAGGCTCCAACCGGCTCCTTTGGCAAGGACCTTCTTGGGTAAACAAACGTCTCGGAGTTTTCTCACAGCTTGATGGCTACTTATGGATGGAAACTTGACCACACAACGTGACACTTGATCTCAGCTGGCAGTGTGTGGCCTGTCGTTGCCTGCAGTGAAGCTCAGTGCCTGGAGCAGAGTCTAGCTCTTTCCCCCACCCTGGTGGCTCCTTATGATGGATCGCGGTTGTACCTGGTTTCTTGCAGCATGGATGGTGTGTATCTAAAGGGTCTTTTGTATCAGCATCAGATTTTCCTGTTCGGTGTTCTGTTAATTTCCATCTACAAAAGAACACCCTCCATCCAGACGCGGAGCCCTGTACACCTGCAGACTGTTTTAAAGCAACAAGCACACAGCTAGGAATAGGAGAGGGGAGATCTGCAAAACAAGCTCCTGTTTAGTGGCagtctgatttaaaaaaacaaaacaaaaaaaacagatttgTTTCATTCCAAAATCTGTATGGAGGAAGTTTGACTTCCCTTTTCTCTGTTGAATCGTATCCGCTCACTCTCGCGTTGAGTGGTGGGATGTCGGAAAAGCCCAACGACAAGATGGTGAAGTTCCTGGCTCCCCTTTCCAAGAGTGGTAATGGCAACGTAAACAACGGATCTGGCTCGGACTCACTTGTTGGTGAAAGGGTGGCAGTGGAGGTGAGGCACCGCCACCACACCATGGAGCGCGATCGCTGCACCGCCGAATATCGACCATTCTTCCGCCGCAGCGTCATCAGCGACTCTAATGCCACCGCCCTCGACCTCCCCTTACCCAGTACAATCCCTATCTTCGCGCCCATTGTACCCCCCGTGCAAGATGTGTCCCATCCTGCCggtccaccccccaccccaagaCCTGCACCCCGTGTGACTGTGAcggagagtgaaggaggagaagtGAAGGTAGATGTGTCTGTAGAGCAGGAGGCTGCCGTAGTACAAGATATCTGTGATGGGGAAGCGGTAGTGACTCAGCCAGCATACAGTCTAGCTGCCCAACCGCCAAGCCAAACGACAGAACCTGGGAGTGGCGGTGaagtgaaagagagggaagagggggaggaagagaaggagaaagccCGGGTGGAggctgaacagagagaggctgagaagAAGGTGCAGGATGACATCGAGGAAGCAGAGACGAAAGCGGTGGGAACGTCACCGGATGGGCGTTTCCTCAAGTTTGATATTGAGATTGGACGTGGTTCCTTCAAGACTGTCTACAAGGGCCTGGACACAGAGACCACAGTAGAGGTGGCATGGTGTGAGCTGCAGgACCGCAAGCTGTCCAAGTCGGAACGTCAGCGGTTCAAGGAGGAGGCTGGCATGCTGAAGGGGCTGCAGCACCCCAACATTGTCCGCTTCTATGAATCCTGGGAGGCCCCCGTTAAAGGCAGGAAGTGCATTGTGCTGGTCACAGAACTCATGACCTCCGGAACACTGAAAACGTATCTGAAGCGTTTCAAGGTGATGAAGATTAAGGTTCTGAGGAGCTGGTGTAGGCAGATCCTGAAGGGCCTTCACTTTCTCCACACCCGAGCCCCTCCCATCATTCACAGGGACCTGAAGTGTGACAACATCTTCATCACCGGCCCCACAGGCTCCGTCAAGATAGGAGACCTGGGATTGGCCACACTCAAGAGGTCATCTTTCGCCAAGAGTGTCATAGGTACCCCTGAGTTCATGGCGCCTGAGATGTATGAGGAGAAGTACGACGAGTCAGTGGATGTGTATGCCTTTGGGATGTGCATGCTGGAGATGGCCACCTCAGAGTACCCATACTCCGAGTGCCAGAACGCTGCACAGATCTACCGCAGAGTCACCAGCgGGGTGAAGCCGGCCAGCTTCGACAAGGTGGCCATCCCTGAGGTGAAGGAGATCATCGAGGGATGCATCAGACAGAACAAGGACGAGAGGTACTCGATAAAGGACCTGCTGAACCATGCCTTCTTCCAGGAGGAGACCGGGGTGCGTGTGGAGCTGGCTGAGGAAgatgatggggagatggaggcCATCAAGCTGTGGCTGAGGATAGAGGACGTCAAGAAACTGAAGGGGAAGTACAAGGAAAACGAGGCCATCGAGTTCTCCTTCGACCTCAGCAAGGACGTCCCCGAGGACGTGGCCCAGGAGATGgTGGAGTCTGGCTACGTGTGTGAAGGGGACCATAAGACCATGGCCAAGGCCATAAAGGACAGGGTTTCCCTCATCAGCAGGAAGAGGGAGCAGAGGCAACAGgtgagagaggagcaggagaagaggaggctggaggaggagCAGGGTCAACGACAACAAGAACTAATTCTACAGCAGCAGCCCGGCACAGAGGCCTCCCAGCCAGGCCAACAGGCTGCCCCCTACACCCAGCCACAGCCCACCCAGCAGCTACCACAGCCCAACCTGCAGACGACAACCGACATCCCCCCTCAGACGGCACAGCTGGGGCCCCAGGGAGTTCCCTACATACCCCAGTCTACAGGGCAGCTCCCAGTCCCAGTATCATCCCAAGTTCCAACCCAGCCAGAGTCAGAGGCGCCAGAGGTGGACCAGTACCCGCAGCAGACTGAGACAGCCAATcaaataacagatagttcctccATCCTTCCCGAGACGCACCTGGTTCAGCCGGTGGTGTCATACAGCACTCTGCCCTGTCAGCAGCCTCAGCCAGAGGCCCCATACCCACAGGGCACGCCCCCTGTCCAAACCGACCAATCGCAGCAGCAGCCGCAGCAAACCATGGTGGTTCCTGCTGCCCAGACTGCCACTGTTGTCCCTGGGGTTCCACAACAGCCACAGCCAGTGGGCAGCACTGCACCTCAGAGCACAACACTACCACCGCTCCAGCCTGGTGCCCAGCAAATACAGGCCTCTGTGAGTGTATCCCAGCCGGCGTCAGCAGAGAAGGCAGCAGGCCAGACAGTGCTGGTGCCTCAGTCTGTGGAGAATTGCCTTTCGAACGTGTCGTCAGGTTTGAGTGACGGCTTTGAGGGGACATCAGATGGTAGACACGAAGGGCGCTCCATGATCAAGCGGCACCAGCAGAACTCTGTACGCAGCCACTCTTGCCACGAGAAGACcgccaaggccaagctcatcgtCCTCAATATCTCCAACATGGGAGACCGGGTGGCAGAGTGCCAGCTGGAGACCCACAACAGGAAGATGGTCACCTTTAAGTTCGACCTGGATGGAGATAACCCTGAAGAGATCGCACGGATCATGGTCCTGAGTAAGTTTATCCTGGAGAGCGAACGCAAGTCGTTCATCGAACAGGTCCGGGAGGTCATCGAAATGCCGGGCGATAAAGGAGAGGGCATGAAGGAAGGCTGCGCTCAACCGCCCTTCACTCAGATTGTGGTAGATGACCCCTTACAGCAGCGTGACAAGCCCACTCCTCTGTCTGGCATTGCAGCTCAGGTGGTCCACTCTGCAGGCCGGAGGTTCATCGTTAGCCCTGTCCCAGAGTCCCGTTTGAGAGAGCAGTTTTTCGGCCCTCCCTCGGCTAACACCTCGTATGGGGACGAGCCCCATCCAGTGAGTCTGGGCCTGTCCCTGTCTGCCCCCTCAAGCCGCCTCCAGCAGGCCTTCACTGAGATGAGGGAGACGCATGGGGAGAGACGAGCCACCAGCACAGTCCCCTCCTCCCAGGCTGGTCTGCACCCGACCACCACCCTGCCTCATGCCTCTGTCATCCCCTCTgggtcctcctctcttcccccctccacaTGCCAAGTTGCAACCGGGAGGGGGTCTCCAACCCAAGTTTCAGCCCCTGCACCTGCTACCAGTGAGCTAATCCCACACCCCCAGCCTGGCTGCCAAGCTGCCCCCTCTCAACCTGCTCCTGCCCAAATCACATTCCCCCCTTCAGCTGCTCTCCAGCCCCCCCAGGCCACCTCGTCCTCTTTCCCCCCAGCCTCTGCCGATCAGATGGGCAGCAGCTCTGCCCCCGTCTCTGGCGCTCCACCCAGTAACTCTGGGACTGTGACCAGCTTAGAGCAGCACCCGGTTCCTGTTCCTATCCTGTCCTCTCAGCCTATCCCTGTGTCCATTCCTGTCACTCAGCCCACCTCCTCCCAGTCTCAGCCTGTCCCTACCTTTGTCCCTGTGGCACAGCCTGCAATGGCCCCCACCCATCTTCCACCCTCTACCCTGCCCTCCCAACCGTCCCAGCTGCAGCCAGGGGACCCAGATGGGGGAGAGTCCCAGTCCAAGGCCCCTGGTATAGATGACATCCATGCCCTGGAAAAGAAGCTGCGCTCCCTCTTTAAGGACTCCACCTCCGCTGACACTGGCAACCCTGAGACCACCTCTTCCTCCACAGAGACCATCTCCCCTCCCCATCTGGCAGCCCTGGTGCCCTCCTACAACCTGTCCCTCACTTCAGGGGAACAGGGAGCCCCGGGCCCCTCCCCCAACCCAGGACAGGGCCTCACACCAGTGGAACATGCACAGATCCATCCAGAAAAGCATGGCCAAGCCATCAGAGCACAGGCAGGCACCCCTACCTCTGAGCAATTGCCTCCATTCCCAGTACCAAACCAGtcccAGCAGCCTCTTGGTAGTCTGGACGGCCAGCTGAGGAGAGCTGTGAGCCCTGAGACCATTCCAGGGAGCAGTAGAGCAGCAACGCCCTCCACAGGGGTCGTCAAACTGGGACGCTTCCAGGTCTCAGAAGCTGGCGCCGGTAGCACTCCTGACCCCTCTACCatcgcctcctcttcctccctcacaccctcttcgtcctcctcttcttcctcgtcTTCCTCCTTTTCCAGCCCAGAGAACACCCTCCAccgctcctcctccctctccaaaGGAGTCTGGAGTGGAGACTCCGTAGATGGGCTCACTTCTCACTTCCAGACGCAGCCTGCCACCATCGGACGCTTTCAGGTGACTGCCAGTGTCACACCCAGCCCCAACTCTGTCTCCAAAGTGGGCCGTTTTTCAGTGACGCCAGCTGCAGCCAATACCATGGCTCCTTCGGGATCTAGCTCCTCCCATCAGAACGGCCCTTCCTCTTCAACAACTTCTGACCCCTGTAGCTCCGCCTCCGCAGGGAACAGAGGTTTGTTTAATCATTACATGACCAGCGACAATGAGGACGACTCGGGGCCAGAGGACGAGGCCTTTGAAAGGGAAGTCAGCCACCTCCGAGAGAAACATATGATAGAGAGCCAGACCCTCCACTCCCGTCACAAGGAGGAAATCGATGCTCTGTTCACCAGGCTGGGTAAACCTCGTCCCTCGgctgtcctctccccctctgtggcCATGGCCGGGGGCAGACGCAGGGCCAAGACCAAGGCCAGCAAATCAGCCCGCAGCAGCACCCAGCCCGGTCCCTTGCACACAGgagccCAAGTCACAGGCCAGATCTCCCCAGAGTCCTCCTCTAAGCAGTCATCTCGCCCCACGGCAGGGCTCTCTGAGCCAGGCAGCCGGACCTCCCTCCAGAATCTCAAACTCTCCCCCTCCTTGCCCAGCCTCAGCACCTCCACCATGGGAGTGAGTGGGACCAGTTCAGACAGTGGAGCGAACACCAGCCAGTGCCAGCCGTCAGGCCCCAACATGGCCCCGGCTGTAACACAGAGTCGCAAGGGCACATTCACAGACGACCTGCACCTGCTAGTTGACAACTGGGCCCGAGACGCCATCAGCCTCTCCCACGGCAAGAAAGGACCCAAGGGGACAGCCCAGGGACCCGGACACGACATCCCTCTACATATCCCTCCTCAAGCCAACATGGgccgaaagtattctgcccccggCCACCTCTGCCCTACTACCCACCCCTCCACCaacccctccatccccctctgccCGCGTCAGGGCTCTCTGGGCACCCCTGCCCAGGTGTTCGGCTACGGCCCATCCACCTACAGCACCCCCCAGTGGGCAGGACCTACAGGTCCCTGTCAGGTGGGCCTCCTAGCCTCCACCCAGCCGCAGGCCCAGTACCAGCCCCAAGCCCCCTCCTCGGCCTCAGCCCCCCTTCAGCAGGCATTCCACGCGGGAGCCACTCAGAAACCTGTCAGCAACCCTGGAGGCCCCAACCTGAGGCCCACGTAGCCTGGACCTGGGTTCGTCAGGCTGGGCTGAGGGCAGGGAGGAAGAGCGCTATAGGACAACTACTAGCACTCTGGTGTTTTGTTCTGTTTCGCTTATTGGTGAGGTGGAAAaaaagaagaggagactgtggtCCTGTCAGACAAAAAAAGAGGTCTGTCTGTTGGTTGGAGGGAGATTTCAATACATACCCATAGCACACCAATCACACCTTCACCCCTACCAGGGCCCAGTCTTTTCTGCCAATGGCTGTGGAAGCGGGCTGTGACATTTAGGTTTGTCCAATGAAAGCCATTGACCCAAGAGCACAAACGGCAACGGCCAGAGACGTCTGTTGAAAGCACCATTGTGACCATTCCCTtgaaggagaggatagggaggggGAACTCTTAATCACTTCTTGACTGTAACTGGCCTTAAGCTTAACTAGGACAGAATTTAGAAGATGGAGAGAAACCCCGCCAACACACACGCACCTCCTAGCCCTACTGTCATTGGCTGAGATTCGGGGGTGTTGAATGGTATGGGAAGCTGTCTTGGTGAGAAACAGATGAATTGTGGGTATCAAGTTTGTATAAAGAAAGTCGAGAGAGACACAGTATGTAGAGAAGGAAAGAAGAGGTGGAATGAGAGTGAATGGAAGCCGGTAAGGTTTTACTGGATAGTGGTTACCCATATCATCGCCATACAGTAAGACGCAATAATAGCATTGTGGGGAAAGGAGTGAGTCCCTGGCCCCGTGTAACAGTGGCCTTCAACCCCTAAATGCATGTGCACATTTTCTTTGTATAACAAATATGTCTTGTCCTAGGTTATGATTCCATGGTTATATTTGACTATCTGTCCCTCTGAGGTGTTGTGCCTGACTGAGGGTGTTACTTTCTTATTTGAGACCATAACCTGTTAGCGTGAGTTAACAGACCTGTCTGTAGATAGTTTATCATTATCTACTTCCTGTCATGTCCATGCTTTGGATTTAGCCTGACTATCCATGAGTGATTTTGGTTTACGCTTTAGAGACTGGTTAGGCTTATCAACTGTTTGAGTGGTATGGGGTTTTAGACTTTAGCTACCGTGTCGGTTGTCTCACCTCACCACCTGGTGTACTGTAGTCACTCTGATAAGCAAGGCTATGGCCCTCGGTACATTCCTGAGACTATCTATAGATACTACTGGTATATTATCTAGCAGTGAACGGGGCATGATGTTCACACAGACCTTAGAAATTTCAACTTTTCACAAATCTATCCAACCTTATTTCCCGTTGTCGTCATATTTCAAAATCATGACAAATTGTCTGGGGTTCCCTTTCTGTggtttattttgtgtgtgtatgtttaaatACAAGATGCTCTCTATGGACCTgtattcagccatcagattttgATATTTCACTAACTTAAGTGTTGTTGAACAACATGTAGTTAAAGGAATATAACGTGCAATTGCAGGGTTATTATTGGTATTGTACTCGGTAACAGCAGAGTAGTCCTGTGCTTCTTCAGCTCTTATCATACACCACCCTGTCTTTTTTTGTTTtactgtgtgtatatgtctaTACATGCAAGGTACATGTGTAGCATTTAAATAATGATTTCATATAATGCTCATTGCCATAGAGTACTATGTCTTGCGATTTACCCACCcccacacagtacacacacggACAGCCCTGTAGTAAACTTTCAGAACTCTTTAGTGCTTCGCATCCTCACTACTGAGACATTCCACCATAATGACCGAGCCCTACTGTTCTTTCTGATGGACTAGAGTCCAGTGACTGCCGACCTGTGAGATCCATCAAACGTCCATAGACATCGGTAAATGTTTAATGTGAAAGTTAGAGATAACTAAAGATGTCTGTCAGAAGAGGCAGGTGAGTCTTATAACATAGGATTGACTCATGTAAAGCAGAGCTGTGGTCACCAAAACCAGCATTTGTGTTTGTTAGTTATTGAAAAAGGGTATGATTTGTCTAAGTGGGTCGTCTGAATGAACGTAATCAGTACAGTATTGCATAGCAGCACATGTTTTCAACAGATGAGCAAACTAAACTGCTGTCTTGTGGTTTTTCTCTCCATTGGCACCATTCTCTTGCTTCTTTGCCACCTTACGTGATGAGTGCCATTCCCCTCAATACAGTGACCTCACCCACTCCTGGTTTGAACTACTACTTTAACTTCTCTAGAGAATAATAAGTTACTGCAATGCAGAATATGCAATGTTTAATAGGGACCAAGGGGGAATGTTTTCATGCCGACGGTTGTTACTTAGTGTTTTTGATATTGGGAAAAAAAGCAGGATTTCAGTTTATGAGTCCACACAAAGTGCCGATCTTGAATTGCTCAGGTGTCAATGTATCTCAATATAATATTGGCATCTGTTTCCTGAATTCTGCATGCTAACTGATTTTAGACCTTTGGCTTACCCACTAATCACCCAATTATCCTCAAGTGGTGAAAAGATTCTACTGGCACAATTCTGGCCCCTCTTTTCTCTTCTAAGGACCAGCCTACTCTATGGTTGTTTTTTCACATtgtacaaaaataaacaaatgcaACTGAAATCA

Function

GO: NA

KEGG:

id description
K08867 WNK, PRKWNK; WNK lysine deficient protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43246 lncRNA downstream 32179 36108398 ~ 36108872 (-) True G38229
TU43241 lncRNA downstream 33154 36106604 ~ 36107897 (-) True G38224
TU43145 lncRNA downstream 95855 36005053 ~ 36045196 (-) True LOC110522092
TU43117 lncRNA downstream 197784 35942686 ~ 35943267 (-) True G38119
TU43150 lncRNA downstream 198447 35942360 ~ 35942604 (-) True G38147
TU43288 lncRNA upstream 1457 36191163 ~ 36191567 (-) True G38269
TU43239 lncRNA upstream 36996 36226702 ~ 36231191 (-) True G38223
TU43339 lncRNA upstream 90642 36280348 ~ 36281267 (-) True G38314
TU43354 lncRNA upstream 101149 36290855 ~ 36291393 (-) True LOC110522167
TU43375 lncRNA upstream 142453 36332159 ~ 36333002 (-) True G38345
LOC110522098 mRNA downstream 9670 36121670 ~ 36131381 (-) True LOC110522098
XM_021600311.2 mRNA downstream 20062 36119271 ~ 36120989 (-) True tmem60
XM_036989478.1 mRNA downstream 60622 36074950 ~ 36080429 (-) True LOC110532269
XM_021600111.2 mRNA downstream 70193 36066946 ~ 36070858 (-) True LOC110522040
XM_021600264.2 mRNA downstream 93468 36037537 ~ 36047583 (-) True fam185a
XM_021600252.2 mRNA upstream 41781 36231487 ~ 36234308 (-) True LOC110522124
XM_021600184.2 mRNA upstream 71482 36261188 ~ 36264106 (-) True LOC110522087
XM_021600332.2 mRNA upstream 101000 36290706 ~ 36322273 (-) False LOC110522167
XM_021600322.2 mRNA upstream 101000 36290706 ~ 36322274 (-) False LOC110522167
XM_036976868.1 mRNA upstream 101000 36290706 ~ 36322277 (-) False LOC110522167
TU43028 other downstream 418995 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 557443 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 699723 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 863046 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1759819 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 180388 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 318832 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1526834 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1935574 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1997782 38187488 ~ 38191736 (-) True G40768

Expression Profile