RNA id: XM_021600184.2


Basic Information

Item Value
RNA id XM_021600184.2
length 1742
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110522087
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36261188 ~ 36264106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAGCAGACAGACAACGCCCCAATGCTTGTCCACAactgttcagtcagtcagtgtgtgtatcAACATGGCAGAGGCAACTTTGGGTCAGGATCCCTTCTGCTGTTCAATCTGTCTGGATGTACTGAAGGATCCAGTGACTACTGCCTGTGGACACAGTTACTGTATGGGCTGTATTAAGGGCTGCTGGGATCAGGAAGATCTGAAAGGTGTCTACAGCTGTCCACTGTGCATGGAAAGCTTCATCCCAAGACCTGTTTTGAGGAAAAACATCTTATTGGTTGAATTAAtggagaaacagaagaagacaggATTAAAATCTGCTCCTCCAGCTCTCTGTTATGCTGGACCTAGAGATGTGGAGTGTGATTTCTGCACTAGGAGGAAACTCAAAGCTGTCAAGTCCTGCCTGGTGTGTCTGGCAtcttactgtgagactcacctcCAGCCTCACTTTGAATCCCCTGCCTTTCAGAAGCACAAGCTGGTCAAAGCCTCCACACAACTCCAGGAGAAGATCTGCTCTCATCATGACAAACCACTGGAGGTTTACTGCCGTACCGATCAGCAGTGTATCTGTTATCTGTGTACAATGAATGAACATAAAGGCCATGATACAGCTGCAGCAGAAAGGACTGAGAAACAGAAACAGTTGGTAGAGAATCAGCAGAAATCCCAGGAGAGAATCCAgcagaaagagaaggagatgcAGGAGCTGAGACAGGCTGTGGTCTCTCTGAAGCTCTCTGCACAGGTAGCGGTGGAGGACAGTGAGAGGATTTTTACTGAGCTGATCTGTTCCATTGAAAGAAGGAACTCTGAGGTGAAGCAGCAGATAACAGCCCAGGAAAATGCTGAAGTGAGTCGGGCTAAAAGGCAGCTGGAGCAGCTGGAGCAGGAGATAGCTGAGCTGAGGAGGAGAGATGCTGAGCTGGAGCAGCTTtcacacacagaggatcacatCCATTTCTTCCAGagttttcagtctctctgtgtcccccctGGATCTGATGCCTTACCCAGCATATCTGTCAATCCACACATATCTTTTCATTTTGTGAAGAATTTTGTATCTGAGGTGACAGAACAACTAGAGGATATCTGCAAGAAGGAAATTGCCAAACTATCATGGGAAGCACCTCCCTCTGACTACTTCATGGATGCCATTCCACATACTTCTTATTACAATTCCAACCAATTGGCAGGGCGGAGACCCAGCCCTCGCTGGATAACCCAACAACAATATTTTCAGAACAAGCAAGCGACCTTCAGCACTGTGAGGCCCAATGTGTCTCACATGGTGACCCCTCATCGCATGGCCGCCCAGGCTGCACCTGCTGTAACCCCAGTGCACATGCCTCAGTACAAGTATGCTGCAGGAGTGAGCAAGCCTTCATACATTCATACACTTCCCCAGGTTGTTAAGCAGCAGCCTGCTGTCCCTGTGCAGGAGGACCAGGAGCCTCTGACTGCCTCCAAGCTggctgctgctcctcctcaggAACAGAAGGAAATGCTGGGTCAACGCCTCTACCCGCTCATCCAGAACATGCACCCCAGTCTGGCAGAAGATCACTGGCATGTTGCTGGAGATTGACAACTCTGAGCTGCTCTACATGCTGGAGTCTCCAGAGTGTCTCCGCTCCAAGGTGGATGAAGCTGTGACTGTGCTGCATGCTCACCAGGCCAAACAGGCAACAATGAGACAAGAAAAACTAAAGAAAAGGAAATAATTTGATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43239 lncRNA downstream 29997 36226702 ~ 36231191 (-) True G38223
TU43288 lncRNA downstream 69621 36191163 ~ 36191567 (-) True G38269
TU43246 lncRNA downstream 152316 36108398 ~ 36108872 (-) True G38229
TU43241 lncRNA downstream 153291 36106604 ~ 36107897 (-) True G38224
TU43145 lncRNA downstream 215992 36005053 ~ 36045196 (-) True LOC110522092
TU43339 lncRNA upstream 16242 36280348 ~ 36281267 (-) True G38314
TU43354 lncRNA upstream 26749 36290855 ~ 36291393 (-) True LOC110522167
TU43375 lncRNA upstream 68053 36332159 ~ 36333002 (-) True G38345
TU43399 lncRNA upstream 97580 36361686 ~ 36361956 (-) True G38369
TU43400 lncRNA upstream 98108 36362214 ~ 36362415 (-) True G38370
XM_021600252.2 mRNA downstream 26880 36231487 ~ 36234308 (-) True LOC110522124
XM_036976806.1 mRNA downstream 71482 36141051 ~ 36189706 (-) True LOC110522050
XM_036976802.1 mRNA downstream 71484 36141051 ~ 36189704 (-) False LOC110522050
LOC110522098 mRNA downstream 129807 36121670 ~ 36131381 (-) True LOC110522098
XM_021600311.2 mRNA downstream 140199 36119271 ~ 36120989 (-) True tmem60
XM_021600332.2 mRNA upstream 26600 36290706 ~ 36322273 (-) False LOC110522167
XM_021600322.2 mRNA upstream 26600 36290706 ~ 36322274 (-) False LOC110522167
XM_036976868.1 mRNA upstream 26600 36290706 ~ 36322277 (-) False LOC110522167
XM_036976896.1 mRNA upstream 105985 36370091 ~ 36387491 (-) False LOC110522187
XM_036976888.1 mRNA upstream 105985 36370091 ~ 36409064 (-) False LOC110522187
TU43028 other downstream 539132 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 677580 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 819860 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 983183 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1879956 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 105988 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 244432 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1452434 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1861174 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1923382 38187488 ~ 38191736 (-) True G40768

Expression Profile