RNA id: XM_021600332.2


Basic Information

Item Value
RNA id XM_021600332.2
length 2422
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110522167
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36290706 ~ 36322277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATTCTCAcagactcactcacacacatctgCGTTTGTATGGTTTACCCTTGGGAATAAGAGAGCACTCCAAACATCATTCATATTCATTAGAGGCCTCAAGTGGTTCTTTATGTACTCctgccctccatccctcccctctttcGCTCCCTCCTTTCCCAATTGTTCATCCTGGAAACTGCTCCTCTCGTCTTCTCTCAGCTCACAAAGGCTCACTTCTTCTTTggcccactctcctctcctcctgtctctggcTCCtcatctttttctctcttctgtcttttctctcACCTGGAACCTGGGCTTGAGAGCTGAAGGTGTGGCTCCTCTCACTGTGTTAGCTTAGCCAGCCTTTAATCCCTGAACCTTCTCATCAAACACGGTCAGTTCACGGTCGAGCACGATCAGTCCACGGTTAAATACAGTCTTTCTGCGTGTGGTGGAAGGTGTTCACATAGTGAGGTGAACCTGACAACATGAAGAAAGTGTACAGCATGTTCAACCTGAACAAAACCAAGGAAGAGGAGGCAGTTCAGGCCATCTGTATCAAGCAAATCCAGTTTGCTGATCAGAAGCAGGATTTTAACCAACGTCTTAGTAAGACCAGTCGTCGCTCCCGTTCTTTCTCCCAGTCCTCCACAGATAACTACaactcagACAGTTCAGAGGATGCGACGTCTCCTAGAATCCGGCAGCAGAGGAGCTCTAAGGGACATCAAGACTTCTGCGTCAAGAACATCAGACAGGCCGGCCTCGGACGCAGGGAGATAACGATCGCTGAGCAAGAGATGCCAGCTCTGATGTCcctgagaaagagagcagagggagagaagccACTGGCTGGAGCTAAAGTAGTGGGCTGCACTCACATCACCGCTCACACAGCCGTGTTGATGGAGACTCTGTCTGCGTTGGGGGCTCAGTGTCGCTGGGCAGCCTGTAACATCTACTCCACCCAGAACGCTGCAGCTGCAGCTCTGGCTGAGgaaggcttcCCTGTGTTTGCGTGGAAGGGGGAGTCGGAGGATGACTTCTGGTGGTGTATTGACCACTGTGTCAGCCTGGAGGCCTGGCAGCCCAATATGATCCTGGATGATGGGGGAGACCTGACCCACTGGATCGATAAGAAATACCCCAGCATGTTCAAGATGATCAAGGGTATCGTGGAGGAGAGCGTCACAGGCGTTCACAGGCTGTACCAGCTGTCCAAGGCAGGGAGGCTGTGTGTTCCTGCTATGAACGTCAATGACTCAGTCACCAAACAGATGTTTGACAACCTCTACTGCTGCAGGGAGTCCATACTGGATGGGTTGAAACGGTTGACAGATGTGATGTTTGGGGGAAAGCAGGTTGTGGTGTGTGGTTATGGAGAGGTTGGTAAAGGTTGCTCTGCCGCTCTGAAGGCCATGGGCTCAATAGTGTACATCACAGAGGTCGACCCCATATGTGCCCTGCAGGCCTGCATGGACTGCTTCAGACTGGTCAAGCTCAATGACGTCATCAGACAGGTGGACATGGTCATCACCTGCACGGGCAACAAGAACGTGGTGGGAAGAGATTATCTAGACAGAATGAAGAACGGCTGCATCGTCTGTAACATGGGTCACTCCAACACTGAGATAGACGTgGCGAGTCTGCGGAGCCCAGAGTTGACCTGGGAGAGAGTGAGGTCACAGGTGGACCATGTCATCTGGCCAGATGGCAAGAGAATTATCTTACTGGCTGAGGGTCATCTGTTGAATCTGAGCTGCTCCACGGTACCCTCGTTCATTCTCTCCATCACCGCCACcacacagGCGCTGGCTCTGATTGAGCTGTACAATGCCCCAGAGGGACGATACAATAAAGACGTCTACCTCCTGCCAAAGAAGATGGACGAGTTTGTGGCCGGACTCCACCTGCCAACGTTTGACGCCCACCTCACAGAGCTGACTGATGAGCAGGCCAAATACCTGGGCCTCACCAAGACTGGACCCTTCAAAACAAACTACTACAGGTACTAATCCATGGAAGTGAAGACCAAAGATACACCAGAGCACCCCAAAGACATGTGGCTCAGAGGAAGCGAGGACCAGGGAGACCTGAATCAGATTTGTGTATGTGGGGCAACTGTTGCCCAGCGCTGAGCTGTAACACCCCAAACATGACGGTCAGactgacctttaacccctgacccctgctgAGCCATCTGACCCATAGAGATAAATAGATAACTCTAGTGCCCAAAAGCCTGGGTTTGGAGGAGGTGTATGTCAACATGTAATAGAGAAACACAGATTATCTACTTTTTCATAGACTTACTTTCAGTTACAAATCTTCTCAAAAGATACAGTATCTAAACAATGTTTCAACTTTCTGAATGTAAACAAAAGCAGATAAGGAATAACCAAAAGGTAAAAGATTAATAAAATGTTACATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43339 lncRNA downstream 9439 36280348 ~ 36281267 (-) True G38314
TU43239 lncRNA downstream 59515 36226702 ~ 36231191 (-) True G38223
TU43288 lncRNA downstream 99139 36191163 ~ 36191567 (-) True G38269
TU43246 lncRNA downstream 181834 36108398 ~ 36108872 (-) True G38229
TU43241 lncRNA downstream 182809 36106604 ~ 36107897 (-) True G38224
TU43375 lncRNA upstream 9886 36332159 ~ 36333002 (-) True G38345
TU43399 lncRNA upstream 39413 36361686 ~ 36361956 (-) True G38369
TU43400 lncRNA upstream 39941 36362214 ~ 36362415 (-) True G38370
TU43402 lncRNA upstream 40547 36362820 ~ 36363094 (-) True G38372
TU43404 lncRNA upstream 40874 36363147 ~ 36363348 (-) True G38374
XM_021600184.2 mRNA downstream 26600 36261188 ~ 36264106 (-) True LOC110522087
XM_021600252.2 mRNA downstream 56398 36231487 ~ 36234308 (-) True LOC110522124
XM_036976806.1 mRNA downstream 101000 36141051 ~ 36189706 (-) True LOC110522050
XM_036976802.1 mRNA downstream 101002 36141051 ~ 36189704 (-) False LOC110522050
LOC110522098 mRNA downstream 159325 36121670 ~ 36131381 (-) True LOC110522098
XM_036976896.1 mRNA upstream 47818 36370091 ~ 36387491 (-) False LOC110522187
XM_036976888.1 mRNA upstream 47818 36370091 ~ 36409064 (-) False LOC110522187
XM_021600499.2 mRNA upstream 217524 36539797 ~ 36550002 (-) True LOC100750228
XR_005053627.1 mRNA upstream 318782 36641055 ~ 36641109 (-) True LOC118966750
XM_021600535.2 mRNA upstream 390591 36712864 ~ 36827281 (-) True ldlrad3
TU43028 other downstream 568650 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 707098 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 849378 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 1012701 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1909474 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 47821 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 186265 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1394267 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1803007 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1865215 38187488 ~ 38191736 (-) True G40768

Expression Profile