RNA id: XM_036976888.1


Basic Information

Item Value
RNA id XM_036976888.1
length 4167
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110522187
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36370091 ~ 36409064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAACTGAACTGTTCTCGCCGGGGCGGTTCATACAGGGCTGGGCGTGGACTCTAACAGTCTTCTCTCCCTATTCGAAGCACATTGTTCGCCGTGAGCTAACCTCGCATACAACACTGAACGAATACTTTGATAAATTTCAATTAAAATTGCAGTGTCTGGAATAACATACATTTCTGTTGTCGAAACTATTGAGACATTCGTTGAGGAAACACCATCTGGACTTCAACGCTTGGAACGCTCAGAAGCTACTGAGTAATAATACATTGTTTCCAGTAGACCACCTCGCCCTCTTGATAATTAGGGTAGAGCTCTGCTTATTaagtgtgtgtgtgtgtgtgtggggagcagTGAGGATGACGGAGTACaagttggtggtggtgggggcaGGAGGTGTGGGGAAGAGTGCACTCACCATCCAGCTTATCCAGAACCACTTTGTGGATGAATACGACCCCACCATAGAGGACTCATACAGGAAGCAGGTGGTGATTGACGGGGAGACGTGTCTGCTGGACATCCTGGACACTGCAGGTCAGGAGGAGTACAGCGCCATGAGGGACCAGTACATGAGGACAGGGGAGGGCTTCCTCTGTGTCTTCGCCATCAACAACACCAAGTCCTTCGAGGACATCCAccagtacagGGAACAGATCAAGCGTGTGAAGGACTCTGACGACGTACCGATGGTGCTGGTGGGTAATAAATGTGACCTCCCGGCGTGTACCGTGGACACGCGGCAAGCCCAGGAACTGGCCCGCAGCTATGGAATTCCCTACATTGAGACCTCGGCCAAGACACGACAGGGGGTAGAGGATGCCTTCTACACACTAGTCAGAGAGATCAGGCAACACAAGCTGAGGAAGCTCAACCCTCCTGACGAGAGCGGGCAGGACTGCATGAGCTGCCGCTGTGTGGTGTCTTGATGGAGCTCACCAATTCGCGGTGAGGAGTGGACCTATGGCGCATAGTGGCAACATGGACTTGAAGACTGACGGTGGAAGCTGAAACAACAACAAACTTTTAAACTAAAGAGGACGGTCAAAGAAAGGCAGAGCAAGCAGATGTATCACCAAGCTATCTGTGTACCATAGACGTTTGGGAGAGGAGTACCTTGCCCCTGCCAGGCTGTGCCATGCTAGTCTCGTCTAGACTAGGCTTTCTGTCCCCTCTTTTTGAGTCCATGTCTGCCAGAGCAACACCACTAATGACTATTTTTCTCCAGTGTGATCATGCCGAGCATCTCCAATGAGTTCCTGCAAAGTTATTGTTTAACAGTCTCAACACTGGtcttaaagggggggggggggggtggtcacCAACCCCTGGTGAGTCCCCCCAACACCTCCTCACACCTCAAAACACAGATTTTACATTTGACCCCGTGAAAAGAGTGGACAGTAGTTGCCTATATCCCCATGCCTAATTAACCTCCCCCAGCCTTCCTGTTCCACTCTAGAGGGGCTCTGCAGAAACCTTATTATTATGGATACAAGTAGGGGACAGAGCATGATACAAGACACACCACATAGGAATGATGCCTTTTTTTACGGTTAGTCCAGCCGTCGAACCTAGCTTTCTTTTCTTCTTAAACACATTGTTTTTGCTATGTGATTTTTGTTGTGATTGAAGGTGGTCATGCTCAGCGCTGTAAAGTAAGTCGGGATGTTTATTTTGTGTGATGGGAGGTTGCCATTTTAAGACCTGTCTTGGGTGGAGAAGTGAGTGATACATGAGTGATGTTTTACTTTCTGTTGCCTTCAAGGTTGGGCTGAATTGTGGTTGGAGGCTGGGGAGACTAAAGTCGATGCTTGGTCCATGCAGTGCCATTTATTTATCATGGAATGGTTATGCAGTGAAAGATTCTTGCACAGCTTTTCAAGGAAGTTGAACAAAATATGCTTTGAGCTTGATTACCGGTGGCATTAATTTCTTTCAAGTTCCTTTGCTTAAATGACTTCATGGTGTTTAGTATAGTTTGCCAGTTGTAGATAGCAGGTATCAGTCTTCCCTGTGTTTTTATTAAGGCTCAGGAAATAGGAATTACTCACCTTTTGATCCTGGAACATAAGATAGAATGACAGAATTTCAATTTCACAGATTGTAATGCACAAGACCTGCCTTAAATTACTGCTATATGCGGGATAAAACTGGTTGCTTGGCCACAGTaaccttctctctcattctcacacTATTACCGCCTCAGAAAGATATTTGGTTCCCCGAGAAGATCATTTGATTTAAGATAGTCATGTCTGAGCCAACTTCTATTGAAAGAAAAGTCAGCGGAAAACATTCTTCATTTCAGGGGTTCTCGTAATATTTCTCAATATTGAAAGGCGTAGGTAGGACTACTAGCTTTTGTGCTCTCTACAACACTAACATCAGCATAGGGCTGACAATACAAATGAacactgcttggtcctgtttAACTTGCCTTATTTGTTAGCTAGTACTTCATGCCTTGTACATGTTAGAGCAGTAAGTTTGTCAGATGCAAGTGTTTCTGTGGTGGTCTGTGTCTTCTTTCCTCTGTGGATAACTGTTGTTGTGAATGACTTCTGGCGATTGGAGAATGTTTTCCTCATGTCTGGAGGGAAAGAAGGAGCACAAACAAACTCTGAAACACTCCAACCAGATGTGGTTTTGTACTGCATGCCCTGTCTGAATAGTTAGATTGTTTGTGTTTTAGTCCAAACTAAGTATGTTAAATGACTCCAATCTTAATTCATTAAGTGTTCTGGGGTTTTTTTACTGTAAAAGGGCCACTTTATTTCGATTTCCTCTTGTTTTTGAAGGTACTTATCCCCACAGTTCAGCCACAGTGACCCAGTAGAACATTGTGATGCCTCATTAGACTTCTGTCAAAGCCAAGTCAACACCCCTTGACCTCTTGTATAGAAGACAGACCTAAATGTTGGAAAATAATCATTTTATTTTGTTTCTAGAAATGCTTAATTTCACTCTGACATTTTGCTGCTATCATACATGTGAGTGGTGTTCCTTAGTATACGTACAGTACGTGCTCTTGTATGTGGTTTTCCAGGAGCTCCCCCCCTCCAACAAACACTGCTGAGTTACCCCCTATCTTGCTTGAACACAATAACACCTGTTGGCATATAAGGGCTTTTTAACCTGCACCCTCTACCATGAGAGGGCCCTGCAGTCAGGCAAGACTCCCCCAGATCCTGTCACCTTTCCTGGTTTGCTACCCTTCATATGACCCCTTGGATCCAGGGAATGGACAAACTGTCATGGAGGTGGGCTGTGGTCGAAGGATGAAGATACTGCGCACAGGCTTGGTACCGTAACCTCAGACGACAGCCACTACACTTATTCTGGCTCTGTCTGGATATAACCTCTCCACTGCATTGTGTGGACCACATATTATATTCTGGAGCTCTGAGGGATTCCAAGACGGGGATGATGTTGACCTTTGTATAGGTTGAttctcccccccaaaaatgtgtgtgtggggggggggggggggggtcaaactgATCAAACTGTGAAAAAAGATGCATTTTTAACAGAAAATATTGTTCTATTAATATATGGCACTCCATAACCGTATAAAGTAAATCTGTTCTGTACTTTGAAAAAGAAATAACCAATCTTAAATCTTTGTCCACATAGTGATCTACTGGGTAACGTTAAACAAATCAGACATGCTATGTAACTTGTGTATCAGGTGGACCTCTGGTGATAGAAGACATGTACTGTACAGTTGTCTGAACTATAGTTACCAGTAAGTAATATGCCAGTTAATTATTTTCTACCATTTCCCTTCCCTTGTCTGTCTGTACCATATTGTACACTGACTGACAGGCAGTGATGGACACACATCTAAAGGTAAATTCTTACAAACTGGACATCAGTTGTCGTCAAGAGGAATACAAGACCAGCAGGCCACTGGTAATCATGTCTGAAAGGAGGGGAGAGTTTTGGGGACAAAAACATGGACATTGGGGGGGTTTGCCCAAGTACTGAAATCGCAGAAAGGGCTTGCTTCTCCCTGTAAAACTGTAGTTTGAACAAGCGAGAGAGGACGTGGGTTTGGAAGTTTGATTGTGAAAATATCAACTGTTTGAACTATTTAAGATGTATTTACTCTAATAAAATAGCAAATGTACAGCAGGGCAGGAATAAAGATGTCAAGATAAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43404 lncRNA downstream 6743 36363147 ~ 36363348 (-) True G38374
TU43402 lncRNA downstream 6997 36362820 ~ 36363094 (-) True G38372
TU43400 lncRNA downstream 7676 36362214 ~ 36362415 (-) True G38370
TU43399 lncRNA downstream 8135 36361686 ~ 36361956 (-) True G38369
TU43375 lncRNA downstream 37089 36332159 ~ 36333002 (-) True G38345
TU43951 lncRNA upstream 85055 36494119 ~ 36502447 (-) True G38875
TU43958 lncRNA upstream 89656 36498720 ~ 36499200 (-) False G38881
TU43959 lncRNA upstream 89656 36498720 ~ 36499200 (-) True G38881
TU43997 lncRNA upstream 165977 36575041 ~ 36576178 (-) True G38917
TU44076 lncRNA upstream 295460 36704524 ~ 36710705 (-) True G38992
XM_036976868.1 mRNA downstream 47814 36290706 ~ 36322277 (-) False LOC110522167
XM_021600322.2 mRNA downstream 47817 36290706 ~ 36322274 (-) False LOC110522167
XM_021600332.2 mRNA downstream 47818 36290706 ~ 36322273 (-) False LOC110522167
XM_021600184.2 mRNA downstream 105985 36261188 ~ 36264106 (-) True LOC110522087
XM_021600252.2 mRNA downstream 135783 36231487 ~ 36234308 (-) True LOC110522124
XM_021600499.2 mRNA upstream 130733 36539797 ~ 36550002 (-) True LOC100750228
XR_005053627.1 mRNA upstream 231991 36641055 ~ 36641109 (-) True LOC118966750
XM_021600535.2 mRNA upstream 303800 36712864 ~ 36827281 (-) True ldlrad3
XM_021600554.2 mRNA upstream 475408 36884472 ~ 36952966 (-) False trim44
XM_021600601.2 mRNA upstream 475408 36884472 ~ 36952968 (-) False trim44
TU43028 other downstream 648035 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 786483 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 928763 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 1092086 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1988859 34341562 ~ 34381232 (-) True G36196
TU43930 other upstream 99474 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1307476 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1716216 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1778424 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 2612741 39021805 ~ 39022025 (-) True G41868

Expression Profile