RNA id: XM_036976964.1


Basic Information

Item Value
RNA id XM_036976964.1
length 7604
RNA type mRNA
GC content 0.51
exon number 19
gene id phrf1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36518846 ~ 36538338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGATCCACCagcccaatcccaaagaagaagaagagtgcGTTCGGCCATTTCCGTCACTCCAGCCAGCGATGTCACTCAAGAAAAATCGTGGACTGAGAAATTACGCCAAACATGTCACTCACAACTGTTTAGGCTACTGACAATTCATAAGTCTCACTTAAGCAGAGCCTTTGGGATTTAGCAAGATATTGGTGCTGGAGGCTCTCTGATGTTCAGCCATGGACGAAGAGGACAGCCAGGATGAGCTGATCAACCGGAATGCTACCCACGGAAAAGGGAAAAGGCCAGCATTGTGGGCAATCTCAGATGAAGACTCAGATGATGGTGGGGAGGAATCTGAGGAGGGAGCTTCTGACAGTGGTGAGGAAGAACACCTCGATGGAGAAGAAGATGAGGAGGATGATAGTGATGGTgatgatgaagaggaggatgctGTGAAGGAGGTGGAGGGTGCAGTGGGGGGAGTGTCTGCTGACTTGGCAGGCCTGAGCTCAGATGAGGACACAGAGAAATGTCCCATCTGCCTCAATTCTTTCCACAGCCAGCCTGTGGCCACACCAGAGAGCTGCAAACACTACTTCTGCCTCGACTGCATCCTTGAGTGGTCCAAGAATGCAAACTCCTGTCCTGTGGATAGAATAGTCTTCAATAACATCTACCTGAGAAAATGTTATGGTGGGAAAGTGCAGAAAATGATCACAGTGCAGAAGCCAGTGAAGGAGGGCCAGGAGGAGGTGATAGACCTGGAGCTGGAACAGACCAGCTGTGAGGTGTGTGGGGGGAGCGACCGTGAAGACCGACTGCTGCTCTGTGACGGCTGTGATGCAGGGTACCACATGGAGTGCCTGACCCCCCCGCTAGACGCTGTCCCTGTGGAGGAATGGTTCTGCCCAGAGTGTCAAGCCAACAACCGCCATTCAAGGGGTTCAGAGGAACTGAGCGACGTGGAGAGTCTGAGCAGCGCCCGTCCCACAACCAGTCGCTCCCGCCCCCGCACAACGGGCCCCACCCGGGCCATCGCCCGCACCCAGCAAAGCGAGAGGGTCCGCGCCAGTGTCAACCGCCACCGCATCACCCAGGCACGCACTGCACAGATTGCCCCCAGTTTTCTGATGCCACAGTCCACCTGGCTGGATGACACTATCAACGCAGTAGTGGCAGGACTCAACACAGCCGTGTACATACGGGACCTCACACCCCGTGCTCCATCCAGCCGACGACGCAGGACAGTGAAGCGCAGGAAAGGCAGTAGTAAGAGGTCATCGGGTGAGAAGGGCAAAGCTGCAGGCActggggggaagaggaggaaacGGAGAGTGAGGAGGTCCAAGTCCAGAAGGAAAATGGTGGTGAAGAAGGAGCCTACATCTCGTGGTCGTATAGCCCATAACCTGGGGATAGGGAAGCCCAAATGGGGCTCATCCCTTCCCTCTGTGTACCGGCCTACAGAAACCACTCTGGGCAGTATGAGAGCTGACATAGGAGCTGCTTCGCTCTCTGTCTATGGAGACCCCTTTGACTTGGACCCCTTCACTGACAGgaatgaagaggaggaagagcatGCCTCGGCCATGACATCACTGCTGGAGGCTAAGAGGCATGGCTTATCTCGCTCTGCCCTCCGCTCGCACCAGCCTGTGGCCCGACCAATCACTGCTGGCCTCTCCAGGCGGGGCCCAAGCCTGCCCCAGGTGGCGGCGTTGGCCCCAGTGCCTGACCTTCTGGGCAGCATCCTATCAGGACAGAGCATGCTGCTGATGGACAGCTCAGACGTGGTCATCAACAGAGACGGATCCCTCAAGGCTACCAAACCAGTGGGTGGTGTGTCATCTTCGTCCAGGCTGGGCAGCAGTAGGAGCAGCAGCTCTGGTGAATCAGTAGCCCAGAACCACTCAGGGATGTCCCCTAACCCAGAAGCAgtcagctccctctctcttcccactaACGGAGACCTGGGGGTGGGACCCTCCTGTAGCCCCCTGAACAGGCCCTCCCTCAGCTCCCCAGGGCCCTGCTCGTCCCCTCTCACCCCCCCATCCCCTTGCCCGGCCAGCCACAGCCAGACTTCCCCGCCTCCCAGACCCAGCCCAAGTCTTGGACAGAGCCACTGGGGGGCCACTGGTGTACAACTTCCCCATAGGACCCAGAGGGAAgccacctctaccaccactcCTACCCCAGACTCTCGGTCTAGAGGGAGGGAGACCGTGCCACCACAGCCCCAGGCTAAGAAGGCTGCCCCTAAACCAGTATGGGAAGCACCAGTATCGGTGCTTCCCAGGATACCAAAGATAAAACGGGAGAGTGGTGGGCTAACGAATGGCAGTGTCAGTAGGGGGGGTAGTAGTAGCCGTGCTAATGGTAATGGCTTCCCTGAGGCCTGTGTGAACAGCCTGGGTGGGAACAGGGGTAGGCAGCCAAGGGTGGATCAGCAGCAGCAGGGCAGGACAGAGggccagacacagagacagagaccagagcAAGCAGGCTCTTCGTCTGCCTTCTCCAGCTCCTTTTCCTCTTCCTCTGATTCCCCAGCCAACCCGGCATTGGCATCCACAGTGTGCTTCCGGATCAATGCCAGTGGGAATGCGTGGCACGCCCGACAGCTTAACAACGCCTCAGCAATGTTTGCCACCGGCAACAGTCAAGAACCACTGTCCACGGAAGAAGAGGCggtgaagaggagaagagaggagcgcAGCAGCAAACAGAGGCCCCTggccacctcacacacacaggtcaaagaggaggagggggatataTACGACCCCTTCCACCCAACAGGCTCAGACTCCAACGCCTCAGAAAGTGAAGGAGAGAGCCATGCTGGGGGGAAACTATCCATGGCGCACAAGGAATGTACCATCTACCAGGTGAAAGCTGAGGCACTGGAAAATAGGGTGTCACTGGAGAGGGATGAGGGCTCAGGAGAAGTTCTGGATGTGAAGAGCGAGGCAGACACGGCAAAGCCTGGTCACGGCCCACACAACGCACCCAGGTCTGGGATGACTGGCACCAGCACACCCCTGTCCCAGAGCCATGTCCctgggaagaaggagaggaaagaacaAGGGGGCAAGAATCGAGAGCCCCAGAGCCAGAAGACTGATCATTTCTCATCCAGCTCAGCTTCCAGCCACCACAGCAACAAGATGGTGAAGACCGAGATCAAgtcagagccccaggacagcccCCCCAAGTCCCTGTCCAGGTCTAAATCAAACTCCAGGCCCTCAGGCCATGGGAGGAAAACATCCAAAGGTGGGGAGTCTTCCACGGAACGGGGGTCCACCTCAAACAGCCCGGAGgcaggcaggagaagaggagacaagGCCCCGGAGCAgcaagggaggaagaggggagacaAGGAGggtaagagaggagaagaggggggtgagagaaggTCCAGGCGTTCAGAatcgagggagaggagactgctTTGTTCTCCATCAGACAGCTCCACTTCTGAGACCTCTGAGAGGTCTCGCAAGAAGAAGAGACGGTCATGCTCGCTCTCCAAAGACAGGAGGCGCTCCAGGTCGAGGTCAGGGTCCGGCTCCAGCAGCAGAGAGCGGTCCCAGAGTAGGAAGCAGAAgatggggagcagggagaggaacGACAgcagaggaagtgagagagagaagggtcgGCCATCAAATGCCAAGAAGCGAGGTCACTCGCAGTCTCGCTCGCGGTCcaggtccagggagaggaggaaagaccaCTCACGATCACAACCATCATCCTCTGGGTCAAAAAACAGGTTTGAGGTGCGGTCAAAAGACAAGAAGAGGCCGAGGTCCAGGTCGCGgtccagagagaggagaaaagaagagGGGTCGTCACAGGGAACACACAGACCAGGGTCTTTCTCAACCACCTCCTCCAAAGAGCTAGAAGAACAGAAAGAAAAGATAAAAGAGAAAGTGCTTActctgaaagaggagagagaggctgaagaAGACAGAAAAGAGCGAGAGATCAAACAAGAGATGCCTTCTTCTTCAGGACTCAAACctcactctgtcctctctgtctgccaGGTGAAAAAGGAGAGTGACGGCAATGAATTTAGAACAGAGAAGCACGCCTCTCTCTCAGCAAAACTGCTCAAGGAGTCGAAGCTGCTCAAAGAAATCAAAAAAGAGATACTGCCTGCCTTTGATATGTTTGAAGAATCACTGGATAGTAAACCAATCAAGGAAGAAAAACCTCTGTCAATGTTCAGCGAGTTCAAGGACTTGCAAGAGCACAAGGAGATCAAAAAGGAAAAACCTCCCCCCTCCATAAATGAGGTGTGCGCCCTCCCCACCTCAGACATAACCGAACAAAAAGACCAGGTATTAAAGGAAACCAAGACTGAGCCCATCTGGCCTGAGCTGCCTCAACAACTGACCTCCATCATCACTGTTCCCCCCACAGGCCAACCCAGCCCCAGCTTCTCAACACTCCGCACCAACCCTGTCCCTGCTCCTTCTCAGGCTGCAGTGACTACAGCCGGCCAGCAGGTGGCCCCATCCCTGCCTCTAGTACCAAAGGCCCTCACAGAGACCCCTCCATCTGTCCAAACCATCCCAGTGAAGGAAGAAGTAGAGGAGCATTCCGACTATGAACTTGATGACATGGACGTGGACATGATGCTGGACAGTCTGGACTATGTGAAGAGTGAGAAAGCAGAgccaggaggagagaaaggggaggctgAGGTTAAAGAGGCGAAGGAGGGCGAAGAGGTGAAGACAGTCACGCCAGGTGTTAAAGCCAAACCCTCGGCGAAGAGAGTCACCTGGAACCTACAGGAACCAGATGGACCACAGCCAGAGAAGACTGGTAGTAAGCTGGCCCTCTACAAACTGAAGCTCAAACAGGAGGGAGCTCGCAGACCTGCCTCCTCCGCCCAGGCTTCCAATCAGGTTCAGAGCACCAAGAGGGCCAGTGTGTCTCTAGTGCTCCCCAGTGCACTTTCCAGCTCCAACAGCCTACCACAAGTTGGGCTCTCCAAACCTGTGCAGGGGGAACCCAATGAAGCCCTAGGAGAGGATGATGCTTCCAGAAACGATAATTACATAAAGAAGCTTCACATGCAGGAGAGAGCCATAAAGGAGGTGAAACTGGCAATCAAACCCTTCTACCAGAAGAAAGACATCACGAAGGACGAGTACAAGGAAATCGTACGCAAGGCTGTCCAGAAGGTCTGCCACAGTAAGAGTGGAGAGATCAACCCAGTGAAAGTGGCCAACCTGGTCAAAGCCTATGTGGACAAATACAAACatgacaggaaacacaggaaaggagaggaggaggcagaaacTGATAGAACAAACGATCCAGAGACCCCATGAAATCATCCACAGGCACTCAGCCATATTCAGCCATTTTCACTAATTTAATCATTTCTGTTATCTTATGTCACAGGATTTTAGGGGACTCAAGCAAGGACTTAGAGAAAGAGTGGCtccaaatttgatttgtctttcATAGTTTTTAGGTGCGATAAAGTTATGTTCTGTCCATGGTAATTCACAGTTTCACAAAATCATGGTAGAGGCGTTTCGTTGAAAGAAGATGTGCAAGTAACTTTTACTGCACCCAATGTTGTCTGGCACTTTGATTACCACTGACTGCCAAACATCTGTTTTGAATTGAATTTGTTTCCAGGTTCACCCGGGGCCAGACCATGTAGATCTACTTTGTTGGTCTACTCTGTATGAGGCTAACACAGAGATTCTGTCTTAAAGAGACAGCTCTCAGTCAGATCGCCTTTCAGTCAAGAGAGGCTAAGGGATAATGTGAAGCAGCTATTTCTACTGGCAAAATGTCTGAATAGAAGCAGTGGTGgcttttattttgtatattttgggcAGTAGAGGGGTATTTTTAAAAACGCCACAATGCAGAAAAATACCAGTAGGCAATTTTTTTTGAAAAGGAGAAACAATTATTTTAGATTTGGTGTAAATATTGATTTTGAATGATCATTATGTACGCCCTGCCAGTTGTTAGCTGCCTACCGGGAATTCACAAATGTATATTGTTCATGGTTCTGGATGAAGTTTGTTGTTTTCGTGAATGTCTCTGTGCTATGGAACTGTGGATCCGATGGAGTGCTGGTTGACCATACAGTATGTGGCTCTGCACATAGTGGCTGTCCTCTTCAGTGGTGCTCAGATTGTCAACGCTCCTCTGGTCTCTATTGGCATAATACTAACTTGAGATGAGGGCACACAACTCAGACTTCCTCAAAAAATCTTCCATTGATAATCAATGCATGTTTGTTGAGAAAGTTTGAGTTGTGAATTTTCTTAAGTTTGGACTCGGCCCAAACTTAATCCTACCTTTTCATCAGGTTTTGATTAAGACAGGAAACCAGGTGAGGTGACTGCAATCATCAGCTTTAATTGATCAATTGACCAGTCATTTGCCAATGATTAgtgaaaaccagcagacactggaGTTTATATAAGTTTTGTGAATACTGCACCTTCACCTGTTTTCTCTTAGTTTAATGTTTTGTCTAGAATCAATTGGCTAGTTCTGTTGTATATTTGTAGCAGACTAACAAGTCATAAGACAAAGCATACCATGCCTGTCTTGCAACCTAATCAATGTTTTTCCCATTTCTTCACACATTCACACTTGGTTATGAACTCAACTAGTTGCTCACATTTCTTCTGAAAGACTAATTCCAAAAGCTTATTTTCCAGTTTGAATAATGTGCAATAACCCTTATTCTTGACACTGGTCGGCCAGAGTTTGTTCTTTGTCACAAACAAACTAGATTTGTTTTAGTCCTTGCAAATATTGCCATACTTGTAGTTGCGAACTTGGAAATTGTTAATCAAGTAATAGTCCATAATCCTAGTCAAGGCCAGGATGTTTTTGATAACGACATGACCTGACAAACACTCTTAACAAGGGGCCAAAGGATTTCCTAGTCAGGTGTCATAGGTGGGAGAAACCCCTGGCCCTAGTCATACGGTATTCAATTCATGCCATCCGTAATCACTGTTTCTCATTGGTTGGAAGTGGTTCACTTCCTTCCTGCTAATGAATACTTACAACTGTACCTGAAAACGGTTGGCCTTCTCTACTTATTTTCAAAGACTCCTCTAGATCTCTTCTAAAAGTTTATTTGTAGAAAAGTGCGTTAAAGAATATCCCCCCATCTTTTCAATTTTGGCGTTGGCATGTTCCCATTCTGTGTGTAGTAGAATGGATGTGTGTGGACCTGCCTTGGACTGGGCACCTGTCTTGTCCTACACCTATATTCACATTTCAAATCGATCCCTAGATTATATCTGCTTGGCACTTCTGTAGACCTAAAAGGATTGGATTGGTGTATCAGAGGGCCAGATGGAGTTGCTACCAAATTGTGTATACTGTACCTGCAGTATCTGATCCTTTCAGATCTACTTGAAGTGCCTAGGGGTTGATTGGAATTGAGCTTACGTACTTTGTTTTTGAGAGGAGTGGGGAAAGGAGGTGCTtgagttaaatgtatttggtttttTCTCCTTCATTACTTGATCTCCTAGGGCAAGTGCTTCAGAGGGAACACAAAATGAtaagtaaaataaaatacatttttgtcccAATTTA

Function

GO: NA

KEGG:

id description
K17586 PHRF1; PHD and RING finger domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43491 lncRNA upstream 58898 36459715 ~ 36459948 (+) True G38451
TU43459 lncRNA upstream 59141 36425609 ~ 36459705 (+) True G38427
TU43445 lncRNA upstream 86148 36431983 ~ 36432698 (+) True LOC110522188
TU43413 lncRNA upstream 142803 36374943 ~ 36376043 (+) True G38382
TU43411 lncRNA upstream 145520 36370100 ~ 36373326 (+) True G38380
TU43508 lncRNA downstream 10720 36549058 ~ 36582482 (+) True G38468
TU43568 lncRNA downstream 43058 36581396 ~ 36581833 (+) True G38519
TU43559 lncRNA downstream 112407 36650745 ~ 36686249 (+) True G38512
TU43678 lncRNA downstream 250451 36788789 ~ 36850098 (+) True G38627
TU43830 lncRNA downstream 418889 36957227 ~ 36957548 (+) True G38763
XM_036976927.1 mRNA upstream 7715 36453514 ~ 36511131 (+) False rassf7a
XM_021600523.2 mRNA downstream 16409 36554747 ~ 36560454 (+) True LOC110522265
XM_036977027.1 mRNA downstream 533282 37071620 ~ 37129381 (+) True LOC110522315
XM_021600639.2 mRNA downstream 615135 37153473 ~ 37196648 (+) False LOC110522323
XM_021600646.2 mRNA downstream 615136 37153474 ~ 37196648 (+) True LOC110522323
XR_002473300.2 mRNA downstream 1256104 37794442 ~ 37849251 (+) True LOC110522363
TU42665 other upstream 374884 36141073 ~ 36143962 (+) True G37719
TU42670 other upstream 382992 36133532 ~ 36135854 (+) True rad52
TU42471 other upstream 580179 35934177 ~ 35938667 (+) True LOC110522113
TU42450 other upstream 627239 35887499 ~ 35891607 (+) True LOC110522073
TU42327 other upstream 926919 35591390 ~ 35591927 (+) True G37450
TU43705 other downstream 304270 36842608 ~ 36883892 (+) False G38652
TU43706 other downstream 344325 36882663 ~ 36883892 (+) True G38652
TU45284 other downstream 1232607 37770945 ~ 37771468 (+) True G40149
TU45285 other downstream 1233316 37771654 ~ 37772145 (+) True G40150
TU47352 other downstream 2862825 39401163 ~ 39403330 (+) True LOC110522455

Expression Profile