RNA id: XM_021600499.2


Basic Information

Item Value
RNA id XM_021600499.2
length 2089
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC100750228
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36539797 ~ 36550002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTCCAACTATATGACATCACGACGCCTATAAAACGTTTCTGCCCGGCATTGAACTGAAAACAACTAGAACACTTACATAGTAGTACACGTCCACAGTAGTACACGTCCACAGTCAAACAGCCGACGCGTCTAAGCATTAAAGATGCAAAGCTGCAAACCTCAGTTCGCTGACTGGCTGATAGAACAGGTGCGGACCGAGCAATACACTGGTTTGTTCTTTATTGACAACAATAAGTTCAGAGTCCCGTGGAAACACAATTCTAGGAAGGATTGCTCCGAGGACGACCGTAAAATATTCAGGGCATGGGCAGTGGTCAGTGGGAAAATCAATGAGCATCCCACTGACAAGGCAAAGTGGAAGACCAACTTCCGCTCTGCACTGAACAGCTTGTGCAGGCGTTTCAAGATGGTGGAAGACCACTCCAAGGACTCAAACGACCCCCATAAAGTCTACCTGGTCATCAATGAGTataaCTATGAGAGCCCGCACATAGAAGAAATCACTCTGGAGAACTATGGCCTTGACTGTGCTCTCATCCCTACAGAAAACACACCCCCAGGCATGGAGCATGATATACTGAACTTTAGCAACCTAACCTTGAACCCCCTAGACCTGAACCAACACACAGAGAATTCTATaccggtacacacacaccacccagtgCCACCAGTCCTAGTACAGCAGCCATACTACCAAGTAAATCCGGATGCCCTGCTCAACCTGCCTGCCGCCCACTCATCCCTCTGGGATTTGGAGATCACCATCTCCTATAGGGGGAGCGAGATGCGAAAGACCCAGGTGTCAGGCCCCAGGGTTCAGCTCCACTACCAGTGTAATGCTCTCGAGCCAAACACCCAGCCCCTCTGCTTCCCCAGCACTGACGGGTTGCCAGACCACAAACAGATTGAATACACCAACTGCATCCTAGGAAGCGTCCAAAGGGGTCTTCTCCTCGAGGTACAAAACACTGGTATCTATGGTTACCGGCAGGACAAGTGCCACGTGTTCTCCAGTACTAGCGACCCCAGAGAGGCACACCCTGAACCCAGGAAGATGCCTCAAAATGAAATGGTACAACTGTTGAGCTTCCAGCAGTACGAAAATGagctgatagCATTTAAGGAGAACAGACGAGGCTCTCCTGACTATACCATCCACATGTGCTTTGGTGAGAAGTTCCCTGACGGAAAACCCCTGGAGAAGAAACTCATCATTGTCAAGGTGGTTCCCCTGATCTGTCGTTACTTCCACGAGGTGGCCCAGGAGGAGGGGGCGTCGTCCCTCCAGAATGACAACATCAGCCTGCAGATCTCCCACCACAACAGCCTGATGGAGCTCATCAATGCCACCTGGCCCGACGGCCCACAGCACGCCATGGGGCAGTACTTCTAGACCACCAATTGTACCACATCACCAGCCCTTATCTAGAACTGGTACCTCACTACTGTATCACTTAATTGAATCTTCCAAAAGGAAAGAAATACTTAGCAAGTGGATATGTAATGCAATTGTGTACGACTCAAACATGTAGATCTTTGAAAGTCAAACAAATGTTGGTGTTAGAACAGGGCTCTCCAAcattgttcctggagagctacagtcctatAGGTTTTCACTCAACCCTAATCTAACACACCAGACTtgaataattagctggttgataagccgactcaggttagttacaactggggttggagcgaaaacctacaggatggtagctctccaggaacagggttggagagccctgtgttAGATTATTCTGATCTATGATTTGTGTCATGCAGTAGTATAGGCTGTCCTTCTCTTGacgatgtgtgtatatatatttaaatatacatCAAATCGCTGTGTGTTCGTAATGTGTTCATGTATCATTTAGTGGTATTTTCTCTTCTACTGAATTCCCTTGTGTCCCTATGGGCCACACTTTAAACCTGTCTAGGTCGCTCAACCCTTCAGTCTGTTCTCTTTTGTATTGAAAAATCTGTTTTATTGTACTGAAAGTGAGCAAACTTCACCCTGGCATTGAAAAGCACTTTGTATAGTATTGCAAAACAAGATCAATAAACTTTGCCTTGTTTCCTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05411 IRF3; interferon regulatory factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43951 lncRNA downstream 37350 36494119 ~ 36502447 (-) True G38875
TU43958 lncRNA downstream 40597 36498720 ~ 36499200 (-) False G38881
TU43959 lncRNA downstream 40597 36498720 ~ 36499200 (-) True G38881
TU43404 lncRNA downstream 176449 36363147 ~ 36363348 (-) True G38374
TU43402 lncRNA downstream 176703 36362820 ~ 36363094 (-) True G38372
TU43997 lncRNA upstream 25039 36575041 ~ 36576178 (-) True G38917
TU44076 lncRNA upstream 154522 36704524 ~ 36710705 (-) True G38992
TU44114 lncRNA upstream 212231 36762233 ~ 36789206 (-) True G39030
TU44120 lncRNA upstream 400918 36950920 ~ 36952635 (-) False trim44
TU44122 lncRNA upstream 400918 36950920 ~ 36952635 (-) True trim44
XM_036976888.1 mRNA downstream 130733 36370091 ~ 36409064 (-) False LOC110522187
XM_036976896.1 mRNA downstream 152306 36370091 ~ 36387491 (-) False LOC110522187
XM_036976868.1 mRNA downstream 217520 36290706 ~ 36322277 (-) False LOC110522167
XM_021600322.2 mRNA downstream 217523 36290706 ~ 36322274 (-) False LOC110522167
XM_021600332.2 mRNA downstream 217524 36290706 ~ 36322273 (-) False LOC110522167
XR_005053627.1 mRNA upstream 91053 36641055 ~ 36641109 (-) True LOC118966750
XM_021600535.2 mRNA upstream 162862 36712864 ~ 36827281 (-) True ldlrad3
XM_021600554.2 mRNA upstream 334470 36884472 ~ 36952966 (-) False trim44
XM_021600601.2 mRNA upstream 334470 36884472 ~ 36952968 (-) False trim44
XM_021600563.2 mRNA upstream 334470 36884472 ~ 36952969 (-) False trim44
TU43930 other downstream 28968 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 130778 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 817741 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 956189 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 1098469 35440918 ~ 35441328 (-) True G37907
TU45214 other upstream 1166538 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1575278 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1637486 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 2471803 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 6488726 43038728 ~ 43129029 (-) True tspan9a

Expression Profile