RNA id: XM_021600535.2


Basic Information

Item Value
RNA id XM_021600535.2
length 2117
RNA type mRNA
GC content 0.55
exon number 6
gene id ldlrad3
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36712864 ~ 36827281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTTTAGTCTTCTGTAGCAGCCACAAGTCTCCGCCTCTCACACGGCGCTAAACCGATCCCCACCCAGTGATCCCCACTCACTCCGAATCCCCTGCCACCACCCCTCAAGCCCCTACCACCGCCAGCCTCTTCCTCCCCAGCCCTGATTCTGAAAACTCTGTCCCTGTGAGAATCCGGCTCTTCACGCAAGCCATTTTCTAACTTTGTCCCGAATAGAAAAAAGGAGAAAACAACGCGAAAGTGGAGATAGGAGCAAACCGGATAAGTGTTCTATTGCCCCGATTGTTGGCCCGCGGCGGGGTGCAAAAAGGGCAGGCCGAAAAAAGACCATAAGATGTGGATCTGGTACATCTTGCTTAGTTCGGGGACGGGCTCAAGCTCGGTtgAGAGCCAGCTCCTTCCGGGGAACAACTTCACCACAGAGTGCAATATCCCAGGGAACTTCATGTGTGGGGACGGGAAGTGTGTCCCAGGCGGGTGGCAGTGTGACGGACTGCCCGACTGCTTCGACAAGAGCGACGAGAAAGGCTGCCCCAAGATAAAGTCCAAGTGTGCTCCGACGTTTTTCGCCTGTGCCAACGGGATCCACTGTATCATCGGGCGCTTCCGTTGTAACGGCTTCAGTGACTGTCCTGACGGGAGCGACGAGGAGAACTGCACAGGTAACCCGCTGGTGTGCTTGGAGGCCCGCTTCAAGTGTCGTAACGGGCGCTGTGTGGACCGCAGCTTCCTGTGTAATGGACAAGACAACTGTCAGGACAACAGCGACGAGGAACACTGCCTCACCACCGCAGAGGCTCCAGGTCAGGACTTTGTAACCCTGGACTACCGGCTGCGTTACTACCCCAGCATCACCTACGCGGTCATCGGCAGCGCTGTCATCTTCGTCCTGGTGGTGGCGCTGTTGGCCTTGGTCCTGCACCATCAGAGGAAGCGCAGCGTGCTGCTGCCCCGTGGGGTCCGGGGgtcctcccaccaccaccaccaccaccagcccctGCTGCTGTCCCGCCTGGTCATCCTAGACCGGGGACATGTCCACCCGGCTGGCCCTggcctctcccccacctccccttcTGCTGCGGCCCACTACCCTGCAGGTCCCCCAGGGCTACAGCTGCTGTCTGGGGCCCTCTACCCAGCTGGCATGCCCATGGACTCACCACCTTCCTACTCCCAGGCTGTACTGGATGTCAGCCGGCCTCCTTGGTTCGACCTCCCCCCGCCTCCCTACCTCCCAGACGGGGAGGAGCTGCCGTCAGAAGGTGAGCTGCCCCAGTACGAAGCCCCCACAGTGCGCTCCACTCAGCCAAATACATGCCCATCTGAGCCCCCTACACCCAGAACTGTGGCCCCAGGCTTGTCCCGGCCTAGCCTCAGCTCCAGAGAGGAGTCGGACCAGCTGTAGTCCTCTGGTTACTGCATCTACGCAGGACTAGTACCCAGCCTCAGCGCTGTGGATGGCTGAAGAGAGAAGAGCTGTGCGATATGTTAAGGCCCAAAGCACTGTCCTGCCTGCTGTGGGAATGAGAGACAAGGCGCTATTCTACCTATAGCtacaactgactgactgactgactgaggcaCTTGGAATCATTGCTCTTGTACGCTGGTGCCCTCTGCTGGAAATGTATCTACATATCCCTGACTGGGCTTACTACTCATTCAATCAATCATCAGTCAATTGCATTTAATCTGTGGCTATATAGCgctttttacaaattaatttctCACAGTCTGCTTAACAGAAACCAGAGCCTAAACTTCTAAAGACTGAGAAATACTCCCACAGCCTCCCAACACTATTCATCTCCTGTTGGACTGGTGAAGACCAGTTGGGTGGTTGGGCGAAGATCCTTTAGCTTGGATTAAGTTGACTGGATAGATGGTCAACCTGTGTAGTCCAGTCATGCATTAACAATGAAGTAGGAGTCGCACTAACTAACAGTATTTGTGGTACTCATAAGGGGTCAAATGTCACATGGTGTTACAGTGgcagatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgcatttttttgtgaagaatcaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44076 lncRNA downstream 2159 36704524 ~ 36710705 (-) True G38992
TU43997 lncRNA downstream 136686 36575041 ~ 36576178 (-) True G38917
TU43951 lncRNA downstream 210417 36494119 ~ 36502447 (-) True G38875
TU43958 lncRNA downstream 213664 36498720 ~ 36499200 (-) False G38881
TU43959 lncRNA downstream 213664 36498720 ~ 36499200 (-) True G38881
TU44120 lncRNA upstream 123639 36950920 ~ 36952635 (-) False trim44
TU44122 lncRNA upstream 123639 36950920 ~ 36952635 (-) True trim44
TU44259 lncRNA upstream 143167 36970448 ~ 36970664 (-) True G39158
TU44295 lncRNA upstream 172866 37000147 ~ 37000468 (-) True G39194
TU44318 lncRNA upstream 190011 37017292 ~ 37017552 (-) True G39217
XR_005053627.1 mRNA downstream 71755 36641055 ~ 36641109 (-) True LOC118966750
XM_021600499.2 mRNA downstream 162862 36539797 ~ 36550002 (-) True LOC100750228
XM_036976888.1 mRNA downstream 303800 36370091 ~ 36409064 (-) False LOC110522187
XM_036976896.1 mRNA downstream 325373 36370091 ~ 36387491 (-) False LOC110522187
XM_036976868.1 mRNA downstream 390587 36290706 ~ 36322277 (-) False LOC110522167
XM_021600554.2 mRNA upstream 57191 36884472 ~ 36952966 (-) False trim44
XM_021600601.2 mRNA upstream 57191 36884472 ~ 36952968 (-) False trim44
XM_021600563.2 mRNA upstream 57191 36884472 ~ 36952969 (-) False trim44
XM_021600572.2 mRNA upstream 57191 36884472 ~ 36952970 (-) False trim44
XM_021600592.2 mRNA upstream 57191 36884472 ~ 36952971 (-) False trim44
TU43930 other downstream 202035 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 303845 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 990808 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 1129256 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 1271536 35440918 ~ 35441328 (-) True G37907
TU45214 other upstream 889259 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1297999 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1360207 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 2194524 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 6211447 43038728 ~ 43129029 (-) True tspan9a

Expression Profile