RNA id: XM_021600554.2


Basic Information

Item Value
RNA id XM_021600554.2
length 2356
RNA type mRNA
GC content 0.52
exon number 6
gene id trim44
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36884472 ~ 36952971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATggaaaatgtatttatgtttcaCCATTGAGTAGGAGGCAGCACTCTAAACACAGACCAAACACTTCTGCTTATGTGGAGCCTAAGCTCAATAGCCTCTTAGCTATATCTGAGGAGAGCGGTGGAAGAGTTTGTTTCCTCTCCCTCTGAAGCCTTCTAATCCTGCTCCGTTGTCTGTGTTTGCTAGCGGGCTGCTCCCTCTGCCTTTACGGTTGTCAAGATAgtttctctctcccacttctgtgtctctctttccggCTGCCGCTAGAGAACCAGGAagtaaagagagaaaggggggagaaaaTAAATACCCAGCAGCTGAGGAAAACAAGGAAGTGAATGCAGCCAGAGCTTCAGCTGTGAAGTGAAAGTAGACCAGGGCAGTTTGCATAAGgaagtgctagctagctaacgtcaacACTGTCTGTGCTCTCCCCAGCAGAGAGTTTAACGAAGAGCGGCAGAAAGAGAACGAGACTGCAGCGCCTGCCTCACAGAAATACCAGCAGGTGTCCTGCTCATAGCCCCCTATTCACCCTACTCATACCCACCACAATGACAGACCAAGGGAAACCCTGGAGAGGAAGTGGAGgacctgaggaggaggagttacCACAGATGGATGGGTCATGTGACGCTTGTGAGCCTGACGAGGCCCAGCAGGCAACCCAGGTGTGTTACACCTGCAGCTTCGCCTTCTGCTCTACCCACGCTGAGAAACATGTCCACAGCACACGACACCTACTGACGCCCTACGACCAGGAAGTGGCGCAGCCCCAGGCCCGGTCCCAACAGCCGGCCAGGGACAGAGAcccaggggagggggaggaaaggttTCGAGAGATTGGGCGTAGGGCAGGGCAAGAGGTGATGGAAAATGGGGCATGCGGTGGGACTGGGGTACAAGAGAACGAGgcgtgtggaggagagagagtccaAGGGGAGGGGAAagttgatgatgaagatgatggtgATGAAGAGGCGGTGGCAGCCCCAGAGGGGGGTAGTAAGAGGGAGACGGTGACAGTGGAGAGGCTGCGCTGTAATGAGCATGGCCAGGAGGGTTCTCTTTACTGCAAGACTGACGAGAAGGTCATCTGTGTGGTGTGTGCCGTGCAGGGGGAGCACCGCGAGCATGAGATCATCACCTTGCGCGAGGCCTACATCTGGCAAAAGAGCAGGGAGGGTTATGACCTGCTGGGCTGCACACAGAACATGGCTGACCATATCAAGACCAAGTGGACCAACCCTGAGatGTCTACAGAGCAGTTGGAGGCGTATGTCAACAGTCAGTTTGATGAGCTCCACCGGCTAGTTCGTCTGGAGGAGAAGAGGACCCTCCACCTAGTGGACCTGAAAGAAGCCTTCCTGACCGCCGCCGCCGCCGAGAAGATCGCTGAGATCACCGTCCACACCGAGCGGCTCCAGGAGGAGATGGCCTGTATCACGCAGCAGCTGGGCCAGCTGGACCAGGCTGAGGCACAGCCTGGAGCCGGAGTAGCCGCCATAGCCCAGGGAGGACCATGCCCCAGACCAGCGCAGCGCGACATTGAGGCCAGGCCAAGACTCCCAGAGCCGAGACGAGACCCTCAGGACCCCAGGGACTATGGAGAGGGTGGGTCCAGATCCTCAATGGGACACGCCCCCTGACACCATCTGCCCAATCACAGATCACTTCccactcctctctttcctcctacttCTGTCCAGGAGACCAACAAAACCAGAGAGATTCTCCTCTCCATGTCTGACGAAAATGGAGTGAGAATGaagaaggctgtaacaaaatggatggctcTTTCTTTCTGCTTTCAGAACTTTTAAAACTCTGCTAagtcttttttttaaattgaggtTCATGAGTCGATTGCAATCTATTCCCGTCAGGCAAAATTTTCACACTCAATCAGATCCTTGTCTGGTGAGCTGTGCTCAGTGAGGAGTGTAGGTAGAAAAGCTGAGGACCTGCTAAAACCCAGCAGATGTCAGGATTGGATCATGAAATTCTGAATGTGACACGCTGTGCTTTACATTCATTTCTTCTATGTATTTAGTAATGACAAGCAGCATTGACCAAAAAAAAAGCCAGGCAAAATAAGTTGACAGAACACCTTAGATCAGAGGAGGAATATAGAATGTACAGGACAAGGTGGGTGTTCCTGTTTTATACTCTGAAGGGAAATATATCACAAGTGTCTTAAATCTGCCTTGATGTATAAACACAACCTAGTACTTACTAactgctctcctcttctcttgtttgTCCTCACCTTCAAATtatctcccctccttcctcttgTGTTTGTCAGATTCCTCATCAGATGATGCGTTGGCACATATTGATTTCTGAGAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44114 lncRNA downstream 95266 36762233 ~ 36789206 (-) True G39030
TU44076 lncRNA downstream 173767 36704524 ~ 36710705 (-) True G38992
TU43997 lncRNA downstream 308294 36575041 ~ 36576178 (-) True G38917
TU43951 lncRNA downstream 382025 36494119 ~ 36502447 (-) True G38875
TU44259 lncRNA upstream 17482 36970448 ~ 36970664 (-) True G39158
TU44295 lncRNA upstream 47181 37000147 ~ 37000468 (-) True G39194
TU44318 lncRNA upstream 64326 37017292 ~ 37017552 (-) True G39217
TU44340 lncRNA upstream 72769 37025735 ~ 37026035 (-) True G39231
TU44349 lncRNA upstream 85539 37038505 ~ 37038867 (-) True G39240
XM_021600535.2 mRNA downstream 57191 36712864 ~ 36827281 (-) True ldlrad3
XR_005053627.1 mRNA downstream 243363 36641055 ~ 36641109 (-) True LOC118966750
XM_021600499.2 mRNA downstream 334470 36539797 ~ 36550002 (-) True LOC100750228
XM_036976888.1 mRNA downstream 475408 36370091 ~ 36409064 (-) False LOC110522187
XM_036976896.1 mRNA downstream 496981 36370091 ~ 36387491 (-) False LOC110522187
XM_021600613.2 mRNA upstream 75919 37028885 ~ 37031653 (-) True LOC110522309
XM_021600657.2 mRNA upstream 259454 37212420 ~ 37248824 (-) True LOC110522333
XM_036977062.1 mRNA upstream 334590 37287556 ~ 37342075 (-) False pdhx
XM_021600666.2 mRNA upstream 334590 37287556 ~ 37347643 (-) False pdhx
XM_021600676.2 mRNA upstream 334590 37287556 ~ 37347643 (-) True pdhx
TU43930 other downstream 373643 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 475453 36370094 ~ 36409019 (-) True LOC110522187
TU43028 other downstream 1162416 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 1300864 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 1443144 35440918 ~ 35441328 (-) True G37907
TU45214 other upstream 763574 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 1172314 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 1234522 38187488 ~ 38191736 (-) True G40768
TU47067 other upstream 2068839 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 6085762 43038728 ~ 43129029 (-) True tspan9a

Expression Profile