RNA id: LOC110520456


Basic Information

Item Value
RNA id LOC110520456
length 2559
RNA type mRNA
GC content 0.56
exon number 2
gene id LOC110520456
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39015075 ~ 39019091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGCCATCTCTGTGGAGTGGCCCTGAGGACAGACAAAGGTCCAGAGCATGAGGTCCATGGGCTTCTGGATGAGGCCTGCAGGATTGCCCTGTGGAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGACAGTCCAACCCCATCCGCTGCTGGATGTTGGCCATGCGAGGAAGGGGCTTCTGCAGCTTCTCCAAGATCAATGTCCCTGAGTGGAGACCCCACACTACCCACTGCCCCCTTTGAAACCCTCCCTATAGCGGAaagggaggaaaaggaggaatCCCCCTCGTGGAGTCCCAACGCCTAGCCAAGAGGACCAAGTGGGACCTCCAGGACAATGCTGATATTGTTGGGGAGAAGAGAGCctggagaacagagacagagcccCACCAGGGACCTGGCCTTAGACCCTGGATGAGACCCAGCTTCCAGAGAGCTCAGTGGATGAAGAGCATAACTGTCTGCCAGAAAGAGCACCTGATTGCCAGGCTGCTGACCGATAACCTCCCTGTGGACTTCCTGAGGTCAGACACCTATCAGTTGTGTGAACAACTGCTGTTTGAGCCCGTCCAGTCCCCCTGAAGACACCTCTTCTGCCGCAGCTGCATCACTAAATAAATATGCTCTCTGGGCCCCCACTGCCCTGCTTGCACCCTGCCCTGCGCCCCTGTCAGTCTCAATGCCCCGGCTAAGGCCTTCCTTGGGGTGCTGCACTCCCTGCCACTCCTCAGAGAGAGCTGTGGGGAGCGGGTACAGCAGGACTCGTTCAGCGCCCACTGTCTGGATCACCAgctggaagaagaggagggtggcTGTTGGTCTCCAGAGAAGAGCCTGGACAACTTCCTGCCTGTCCATAAACAGGTAGGCCCGAAAGCATCTCTTGTCGCTGACAAGGCACCCCCAGAAGTACCGGTTGAGGGACATAAAGACCCAGGTGAAGGTGGGCGGGAAACGAACACCGATAGGCAGACGAACTGGAGGCCATGTTGCAAGGTTCGAGTCttggtctgCATCCTGCTGTGTGTCTGGCCATCCAGGTCAACATGTTCCTGAGCTACAGCCAGTATCACATGATGTAGTAGTGGGCACCAGATCATCCAGCTCCTGCACACCCTGCGGGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCTTTCGAATGGCAGCCGGCCCTCAAGGTCGTGTCCAGATCCTGCCATGTGGGGATCATTGACAGGCTATCAGGGTGGACCACCTCTGGAGACAACTCCCCAGCGAACAACATCACACGTTGATTCCGATACGATGTGGCCCTGGTGTCGACCTTGAAAGACCTGGAGGAAGACATACGAGGCCCGGAGGACAGCACCTGCACCTCTGGCTTCAGTGTCATGATCGAGGAGTCCTACGATGGCATGGGCAACATCAGTGAGAAGCAAGGTGGAGGACCAGCCATCCTGGAAAAGGCTGTGCATTTCTCCATCACCATCATGTCAGTCTCTATCCAGGCTGAGGGTGAAGATGAGGCAATCACCATCTTCCGGGCGCTCATGCCCATCTCAGAGATGTCTGATGTTTGTGGACGAGTCGGGCCACGAGAGACTCATAGAAATCCTGGGGCACGTGGTGGCCGAAAGGAACACTACGAAGCATAGTcgtctcattctgtctgtggGCGGCCTTTGTCTTTCCATCGGTTTCCACTTCAGGGGCACGGGTAACGTCAAGATGATGGTGTGAGATATAGAGGGTTTGGAGGCTTCAGGCTCCACTTACTGCATGCTGTGTGACGCCACTCAGGCAGAGGCCTCCCACAATATGACTCTCTACTCTATTACTCGCAGCCATGGCGAAAACCTGGAGCGCTACGTACTCTGGAGGACCAACCCTTATTCTGAATGTTGCTGTGAGACTCGGTCAAAGGTGTCTCTGCTAAGCCCTTCATGGAGACCCAGTCCACCCTGCACTGCAACGTCACCGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTACCACAATACCAACCCCAGTCAGCTGGCAGGCCACCCTGAGGAAGAAGATGAAGATGTGGAGGTGGTGTGTGAGCTGGTGCACAAAGCGGAGTGGCAGGAAGCTCTGAGGGAGATGATGGTTCTTTACCTCCAGATGGAGCCTGTGTGGCGCTCCACCTGCTCGGCCAAGGAGTGCCCAGACCAGCTCTGCCGGTATGACTTCAACTCCCAGCGCTTCGTAGAGCTGTTCGCCACTGTCTTCAAGAACAGGTATGACGGCAAGATCACCAACTACCTACACAAGACCTTGGCCCACGTGCCGGAGATCGTGGAGAGGAATGGCTCCATCTGTGTCTGGACCAGCGAGGGGAATAAGTCTGGGAACAAAATTTTCAGACGGTTCAGGAAGATGAACGCTTGCCAGTCCAAGGCCTTTGAGCTGGAGGACGTGCTGAAGCACCACCGGCTCTACAACTCCAAGTACCTGGAGAAGTTCATGGAGTCTCACAAAACTCTGCTAAAGCCGTGTAG

Function

GO:

id name namespace
GO:0002520 immune system development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0005488 binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47018 lncRNA downstream 32840 38982006 ~ 38982235 (-) True G41819
TU47011 lncRNA downstream 37200 38977652 ~ 38977875 (-) True G41813
TU46996 lncRNA downstream 44985 38969768 ~ 38970090 (-) True G41798
TU46749 lncRNA downstream 221342 38793520 ~ 38793733 (-) True G41557
TU46743 lncRNA downstream 225754 38789113 ~ 38789321 (-) True G41551
TU47075 lncRNA upstream 9112 39028203 ~ 39028428 (-) True G41876
TU47170 lncRNA upstream 65851 39084942 ~ 39085154 (-) True G41963
TU47649 lncRNA upstream 73146 39092237 ~ 39092455 (-) True G42408
TU47650 lncRNA upstream 73441 39092532 ~ 39092743 (-) True G42409
TU47657 lncRNA upstream 78047 39097138 ~ 39097342 (-) True G42416
XR_005051684.1 mRNA downstream 948470 38065959 ~ 38066605 (-) False LOC118964575
XR_005051686.1 mRNA downstream 953412 38061089 ~ 38061663 (-) True LOC118964577
XM_036989519.1 mRNA downstream 1321224 37688750 ~ 37693851 (-) True LOC118966689
XM_036989509.1 mRNA downstream 1327330 37682644 ~ 37687745 (-) True LOC118966688
XM_036989498.1 mRNA downstream 1333436 37676381 ~ 37681639 (-) True LOC118966685
XM_021600757.2 mRNA upstream 61912 39081003 ~ 39084318 (-) True LOC110522389
LOC118966691 mRNA upstream 81734 39100825 ~ 39115097 (-) True LOC118966691
XM_036977133.1 mRNA upstream 295961 39315052 ~ 39336321 (-) False man2a2
XM_036977115.1 mRNA upstream 295961 39315052 ~ 39336324 (-) False man2a2
XM_036977122.1 mRNA upstream 295961 39315052 ~ 39336325 (-) True man2a2
TU45924 other downstream 823339 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 889350 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1298042 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 2504246 36508538 ~ 36510829 (-) True G38855
TU43851 other downstream 2606056 36370094 ~ 36409019 (-) True LOC110522187
TU47067 other upstream 2714 39021805 ~ 39022025 (-) True G41868
TU52237 other upstream 4019637 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6701714 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6929867 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 8045683 47064774 ~ 47119033 (-) False G51214

Expression Profile