RNA id: LOC118966691


Basic Information

Item Value
RNA id LOC118966691
length 1690
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC118966691
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39100825 ~ 39115097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGAGGCACGGCTGGAGAGGGAGGCGCAGGCCAAGGATAGGCGGGAGCAGCAGGAGGAAAgaagggcagagaaagagagacagcaggagctCCTTAGCAAGTTAAATGGGGCCCTGGTCACTGTCACACAGACTGCCCCCTACTGGCCCACTggaGAGGACCTCGAGTCCCTGATAACATTGGCAATCAGGATCGACAACCGCCTCAGAGAACGTGTGAGACAGCACCTTTTTGACACCACGCTAGTATCCTGGTTTCCTGAGCACCCCAAGCCCCCCGAACCCAGCATTGaggagcctatgcagctgggaagCACACGTCAGCCCACAGAACACATGCTGCATGTCCGCCAAGTCCTGAGACGCCTGCTGCAGAGCCAACTATATATCAAGATAGAGATGTTTGAGTTCCACGTATCCCAAGTTTCCTTCCAGGGTCACATTATCTCTACCGCAGACATCCAAATGGACCCCGTAAAGATTGAGGTGGTCGCCGACTGGCCCCGTCTCACCTCACTCAAACAGgttcagGTTGTGGTGATGAATGGCTGTGGCTCCCTCTTCTCATCCATAGCCGCAGTGCTTTGTGACCTGCAAGatgcAATCCTTATTTCAACGCCATTCTATAGTGGTCACTGAGGATGTGCATCCCTACAGTGGTGTTCGGCTCTTCTATGTTCACCTCGACTGTGAGATGagaggagcaaaTCGGCCTTTCCACCTCGCTGTGGAAAGACTGGAGAAAGCTATGGGGAAGGCCACTAGTGAGGGAGTGAATGTCAGAGTCATGATCCTGGTGAACTCCCATAACCCCCTGGCTGAGGTCCACTCCCCTCATGACTGGCTTCCTGGAGTTTGTCAAGAGGCATGAGTTGCACACCATTGTAGATGAGGTGTACATGCTGACGGTGTATGAAGAGACAGCCACCTTCCACAGTGTCCTTAGCATGGAgagCTTGCTGGACTGACAGAGAACACATGTGATGTGGGGGATCAGCAAGGACTTTGCGATGGCTGGGTGTGTGTGGGAACTGTGTACTCTGACAACAGGGACTTGGTCGAAGCTCTGGATAAGCTGTGGATGTTCCACGGTGTCCCTGATCCAATACAGCATCAGATGGCAAGGCTGCTCCAGGACAGagATTGGATCGATGGGATATTTCTTCCATTTAACAAGCTGAGAATGCAGGCCGCTCACAGATACATGACTGAGGAGCTACAGAGCCTGGGAGTCCACTACCTCCACCAGCCTGCTGGCTTCTACATCTGGGCTGACCTCAGGAAGTACCTGCGTGAACCATCGTTTGTGGAGGAGCTGTCTCTGTGGAGGTGTTTACTGAAATCCAAGGTGGTGCTGAGCTGTGGCCAAGCCTTCCACTGCTACACTCCTGGCTGGTTCCGACATCAATACCTGATGCTCGGCATGCAGAGGATCAGGAAGGCCCTGGAGGAGACAGATAAGGCCACATCCACCCCTGACATAGGCACAACCAACGAGGCCACCGAGAAGGAAGGGACAAAGATGACATCAAAGAGGGACACAACAGGCTCACACAAAGCTGTGGCTGTCAAGTCAACACCCTTGCCCAAGAACAACTCATCATCAGAAGAGCCAGGGGAGAAggataaccctgaccctgatgcCATCCCATTAGCCATTGAAGACTTTGTCTTGCTGGACTGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47659 lncRNA downstream 452 39100132 ~ 39100373 (-) True G42418
TU47657 lncRNA downstream 3483 39097138 ~ 39097342 (-) True G42416
TU47650 lncRNA downstream 8082 39092532 ~ 39092743 (-) True G42409
TU47649 lncRNA downstream 8370 39092237 ~ 39092455 (-) True G42408
TU47170 lncRNA downstream 15671 39084942 ~ 39085154 (-) True G41963
TU47864 lncRNA upstream 274274 39389371 ~ 39390941 (-) True G42605
TU47933 lncRNA upstream 359689 39474786 ~ 39475050 (-) True G42661
TU47935 lncRNA upstream 363913 39479010 ~ 39479259 (-) True G42663
TU47939 lncRNA upstream 366547 39481644 ~ 39486010 (-) True c1h15orf40
TU47941 lncRNA upstream 372935 39488032 ~ 39488448 (-) True G42668
XM_021600757.2 mRNA downstream 16507 39081003 ~ 39084318 (-) True LOC110522389
LOC110520456 mRNA downstream 81734 39015075 ~ 39019091 (-) True LOC110520456
XR_005051684.1 mRNA downstream 1034220 38065959 ~ 38066605 (-) False LOC118964575
XR_005051686.1 mRNA downstream 1039162 38061089 ~ 38061663 (-) True LOC118964577
XM_036989519.1 mRNA downstream 1406974 37688750 ~ 37693851 (-) True LOC118966689
XM_036977133.1 mRNA upstream 199955 39315052 ~ 39336321 (-) False man2a2
XM_036977115.1 mRNA upstream 199955 39315052 ~ 39336324 (-) False man2a2
XM_036977122.1 mRNA upstream 199955 39315052 ~ 39336325 (-) True man2a2
NM_001160543.1 mRNA upstream 242036 39357133 ~ 39359660 (-) True kip1
NM_001165166.1 mRNA upstream 366504 39481601 ~ 39486009 (-) False c1h15orf40
TU47067 other downstream 78800 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 909089 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 975100 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1383792 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 2589996 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3923631 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6605708 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6833861 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7949677 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 8173842 47288939 ~ 47289681 (-) True G51285

Expression Profile