RNA id: XM_036977115.1


Basic Information

Item Value
RNA id XM_036977115.1
length 6734
RNA type mRNA
GC content 0.51
exon number 23
gene id man2a2
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39315052 ~ 39336325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCTTTCTAGCGAATTTCTTTGATAAATTATTGTATAACTAGCAAATTAGTTTTGAAGTTGAGGGTGCAGTATTTATGAAGTTTGGCAATGAGGATTAGCATAGTTCCGCTAGCCAGCTAGTTTAGCCAAGGAAAACTCGGGAAGGATATAGCTGGGCGCACTAGGCTAATTCAGGATACTTGTTTTTGTGCCCTGACATCAGGAGCCAGAGGCGAAAAGTTTGATTAAAAGTTTCAGAGACTGAAACGAATACATCAGATAACACATATTTAAGGAGTGAGAATCGATATACAATCCCGAAATCGGCTGTAACTGTCACCAGCTAAACAAAGCTTAAAACGATGTTTGAATGACCCTGAATCCACAAAATGAATTGTGACTGAAGTCGCTTATGGACACGtcggtagactcctcctcctcacctcattgaaagaaaaaaaaatgagGGAGTGGGATATTTCGGTTCCTCTTTCGTCTCTGACACGCATATCCAATCTATGGCTGACGGCGAAACAGAAAACCATTCGGTAGCTATGGATAACCGTCCACGGGCATCATAACGTCAATTTTTTATGTGTCCCGTAAACAGATATTCGGGATGATTTGACTCTGACTGGCTTTTCTACAGGCTAAAGGATGAAGTTGAAGAAGCAGGTGACTGTGTGTGGAGGAGCCATATTCTGTGTGGCCGTATTCTCCTTATACCTGATGTTGGACAGAGTCCAACATGACCCTGCAAGGCGACAGAACGGCGGCGGGAACTTCCCAAGGAGCCAGATCTCTGTTCTGCAGAACCGCATAGAACAGCTGGAGCAGCTACTGGAGGAGAACCACCAGATCATCAGCCACATCAAGGACTCTGTCCTGGAGCTGACTGACACCGGCGCTGTGTCCCCCAGTGGACAGCTGCCTTTCCGCAGTGCCAACGGCTCCTGGGTCCTGCCCTTCGACGGACGCCCCACTTTCCTCTCTGTCAAGCCCCAGGACTGCCAGTTTGCCCAGGGCCGCCGCGGACAGACCGACCTGCAGATGCTGGACGTGTACTCCCTGCTGAAGTTTGACAATGTGGACGGGGGTGTGTGGAAGCAGGGCTTTGAGATCACCTATGAGCCCGGGGAGTGGGACAGTGAGCCTCTGCAGGTGTTTGTGGTCCCTCACTCCCACAACGACCCAGGCTGGATAAAGACATTTGATAAGTACTACACAGACCAGACGCAGCACATCTTCAATAACATGCTGGTGAAGTTGACTGAGGACCCACGCAGGAAGTTCATCTGGTCCGAGATCTCCTATTTCGCCAAGTGGTGGGAGAGCGCTGACATGCATAAGCAGGAAGCCATGCGCAAGCTAATCCTAGGAGGTCAGCTGGAGATGGTGACTGGAGGCTGGGTGATGAGTGATGAGGCCAACGTTCACTACTTCGCCATGATCGACCAGCTCATAGAAGGCCATCAGTGGCTGGAGAAGAACGTGGGTGTGACCCCCCGGTCAGGCTGGGCTGTGGACCCCTTTGGCCATAGTGCCACCATGCCCTACCTGCTGAAGAGGGCCAACCTGACCAGCATGCTCATCCAGAGGGTCCACTACTCCATAAAGAAGCACTTTGCCTCTATCCGCAGCCTGGAATTCATGTGGAGGCAGGCCTGGGACCAAAAGTCGGGTACGGACATCTTCTGCCACATGATGCCCTTCTACAGTTATGACGTGCCACACACCTGCGGGCCGGACCCCAAGATCTGCTGCCAGTTTGACTTTAAGAGGCTGCCAGGAGGCCGGGTCAACTGTCCTTGGAAGGTTCCTCCGCGGGCCGTGGTGGAGGCCAACGTGGCAGAGAGGGCCCACCTGCTCTTGGACCAGTACCGAAAGAAGTCCAAGCTTTTCCGCAGTAAGGTGGTTCTGGTTCCACTGGGAGATGACTTTCGTTACGACAAGGCCCTGGAGTGGGACCAGCAGTATCTCAACTACCAGAGACTCTTTGACTACATGAACTCTCACCCCGAGATGCACGTGCAGGCCCAGTTTGGGACCCTGACCGAATACTTCACTGCGGTTTACAAGGCCAACAATGTGCCCCAGGGTGCCAGACCCCCAGACTACCCGGTGCTGAGTGGGGACTTCTTTGCGTACGCAGACCGCGAGGACCACTACTGGAGCGGCTACTACACCTCCCGGCCCTTCTACAAGAGCATGGACCGCGTGCTGGAGTCCCATCTCCGGGGGGCAGAGATCCTGTTCAGTCTTGCCGTGGCTCATGCTCGCCACACAGGCATGGAGGGCCGCTACCCCACTTCAGACTACACCCTGCTGACGGACGCAAGGCGTACCGTCGCCCTCTTCCAGCATCACGATGCCATCACAGGCACCGCCAAGGAGAACGTGGTCATTGACTACGGCAACAGGTTACTGCACTCCCTGCAGGGCCTGAAGAGAGTGATCATTAACGCAGCCCACTTCCTAGTGATGAAGAACAAGGATGTGTATCGCTTCTACCAGACAGAACCCTTCCTAGAGACGGATGACAGACGTGCCACCCAAGACTCCCTGCCCCAGCGCACTCTTATTGAACTGGACCAGTCAGGACCCAGGTACCTGGTGCTATTCAACCCGGTGGAGCAGGATAGGCTGTGTGTGGTTACAGTGTTGGTGAACTCTGCCAGGGTCAGGGTGCTCACAGAGGACGGACAGACCCTCCCTGTGCAGCTCAGTGCCCAGTGGAGCTCTGCTAGCCAGATGAGCGCAGAGGTCTTCCAGGCCTCCTTCATGGTGCGTCTGCCTGCCCTGGGCCTGGCTGTGTTCCACCTGTATGACTCTGCCGACACCCCCATGACGCTGCGCTCTGAGACCCTGCTGAGGCTGTCTGGTCGGGGGCAGACTGCCCACGCTGTGGATCCCCTCCCCCTCCGCTCCCAGACGGCAGACCCACAACCCTTCTACACCTCCACCCAGTCCCTCACACTGGGCTTCTCAGGAACCACAGGCCTGCTGGAGAGTATCCGTCGTAAAGATGACCCTCAGGAGTTGAAGGTTCAGATCCAGTTTGTGACATATGGTACTCGGTCCTCCAAGGATAAGAGCGGGGCTTACCTCTTCCTGCCTGACGGAAAGGCTAAGCCCTACAGTCAGAAGGAGCCTCCGGTGGTGCGTGTGGTGGAGGGACCTCTTTTCTCTGAGGTAGTGGCTTTCTACCAGCACTTCCAACAGACCATCCGCATACACAATGTGCCAGGTGTGGACGGTCTGTCCCTGGATGTCACCACCATGGTGGACATCAGAGAACAGTCTAACAAGGAGCTGGCCATGCGGCTGGTCACTGACATCCAGAATGACGACACCTTCTACACAGACCTCAACGGATTCCAGATGCAGCCCCGACGCCGCTTCCTGAAGCTCCCCCTGCAGGCCAACTTCTACCCAATCGCCAGCCAGGCCTACATTCAGGACAGCCAGCACCGCCTCACCCTGCACTCTGCCCAGGCCCTGGGTGCCACCAGCCTAGAGAGCGGCCAGTTGGAGGTGATTCTGGACCGGCGGCTGATGCAAGATGATAACCGCGGCCTGGGCCAGGGACTGAAGGACAACAAGAAGACTGCCAACCGCTTCCGCCTCCTACTGGAGAGTAGGTCCACTGGCAACAAGCATGCTGGCTTCTTTGCCAAactctcctccatgtttcactcGCTCATCACAATCACTCTGAGAGGCGGTGCTCAAGAGGTGGTGGACAGTGGACCAACCAGCTTCCCCTCCCTGCTCAGTCACTTGACCTCGGCCATCCTCAACCACGAGGTGATTGCGCTGCCCGTGCTGCCCAAGAAGCGTGGCATCCCTCCCCTGCACACCTTCGCCCCCTTCACGGGGGCTCTGCCCTGCGACTTCCACGTGATCAACCTGCGCAGCATCCAGCACCAGCAGGACACCCACTCCCCGTCTCCCTACACGGCCCTCATCCTGCATAGGAAGGGTCTGGACTGTGGTCTGGAGACCCCCAACCCCGGCTTCAACTGTACCACTACCGAGGGACAGCTGGGTTTGTCGTCTCTGTTCCGTAACCTGGACCTCCAGCTGCTCCAGCCTGTGTCGCTGTCCCTGATGTACTCCAGCCCCCCTATGGCCAACGACTCCTCCGTCAGCCTGGAGCCCATGGAGATCTCAGCCTTCAGGCTCAAACTGCGCTAGCCAAGCCCAGATACACACCTCCACACCAGTCCAGGCCCAGACCAGACCCACCCAGACCAGTTTTGGTCCCACCTGGTCCTGCTCTGTTCAGTTTTATTCTATAGGAAAACTGCATCCCAGTGCACAGAGGGGTGGCCACACGGGTGCTTCCTGGTCCAACCTGTGTATACACtacgcaccacacacaccacacaccacacaccacacgcacTACACACTCTGAACTGTAAATTCAGCCCGTAAGAGCAGGTAGCCTTCATGACTACACTCTATCTGCAGGGGGCAGAAGATGGCTGTCACAGACAGACAATCTCAGAACCAGAAACCTTTTGTGCTTGTGATAATACAGGTGCTGTCTTTATCACAGAACAGATACTGGCGGTCTTCTGCCTTTGCATTGCAGTAGTGATGTCAAGTAACACAAACATACTTTGTTTTCAGTTTTTAAGATCACttcatttgattatttttttGTATCCCATCCTGGACTAACTACTGAATGTAAATATCACAAGGATAAGGACCTGGAAATAACGTGGCGACGAGTGCAATTTCTAAAGCTTTATTTGGTGTGGACAGtttaaaaaatctatatataatcCTGATGGAGCCTACCTGCGGCGGACTAGAGAACTGTTCATTCCATTAGGTGCTCATCACTGCTCATTGTTTTCTATTGACTGCATTAACCGACTGACTGCAGCTGTGTACTCGCAGTGTGAATGTGtgctctcactctcgctctctctctctcagtagctATGGCTCTGTAAGATACTGTATGTCAGGTAGTCAGTCACTCTGTAGTCACTACCAGACTGGTGACTAGATCACACACACTACGGACATCCCAATCCTCACACTGCTTTTTTGCCAGTCATCATTATCGAATGAACTGGACGGCTTGCTATCCTTTCAACCCCCCCTGCTTTCAACCCCCCCTGTAGATGGTCTGTGGACAAAGCTGTCATTTCCTGATGAGTTGGCTGGCAGTGGAGGACCCGGAATGGAATTTAAATTATGTTTGTATTTAAATTCTCCTTAAGCTATTCTTGTTGTGTACTCTCCTGTATGCAGTGGAAGATACAACTATGATGACTATACCTCGTATTTAACATATGACACATGGTTATGTTGCTGTGGAAAACTTCTGTGAAGATGCAGTATGTCGGAGgagtagtgagtgtgtagtgaGACCCAGAGTGCAGTATCGGGGACAAGGTTTCGGTTCATACTACTGGACTGCTAATCGTCATATTAGTGAGTCTGTGTAGTGATGATGGAGCATCGGCGTACTTCCTTATCTCCTTGTTTCAAAGCCAGGCAGGGAGGACTGTGGTTCAACCTTCACTACCTAATTATGTGGAGACATTAACAGGGGTCCTCCAGGGCTGACTTAAACAACCAGTGTACTTTTGCATATGtggtcttttttatttatttatcagctTTCATCATAAAACATCTCTATAGCCTTGACGCTGGTTGGGTGAAGGTACTCTATGATCCGTATGTCTTTGGTGGTGAAGGTAAATCATCAGTAATGGCAGATGCACTATGTTGATATCGGGCCACTCTCTCTGCCATATCTCACTATATGTTTCTCCTCTACCTTCTTCCCTGCATCTTCTACCATCCtagtatcagtggaggctggtgggaggatctATTTGGTATGGCtgaaatggaacggagtcaaacatgtcatttccatatgtttgatacgtCCCTTTTttcaattccattccagccataacaatgtcctcctatagctcctcccaccaacctCCACTGCCTAGTGTCCAATGCTACTTTTCCTCTGGGCTTTTTATATTTCTCCACCTTGCTGTCCTCTGTTACACCTCCCTCACTACATCCCTGATGTTTTACACTCCTTCCTCAGAACACACTTCCCTATGGTCCAACATCTCACTCCACAATGCTCAGGCAATAGCCTGGTCTTATACAGTATGTGCTGTAGCCAATTCCTCTATTGATATGACAACAAAAGAACAGAGTGGTGGTTGAAGTACCAACACACTGGACCACCAGATTACCAATGTACCTGCATCACTTTTCAGGTTGCATTGTGCCTCTGATTATATGTTCTACCATGACATGACACTACCACTGTACCTAGTACAGCACTTtcccctgtccctttctcctcctctattTCCTACTGTCTGTGTCTGAGTCACTCTGTAGACTTGTCTTTTGTATGTGATTTGTTGTAGCACTTTTTTTTGTTTAAGATGGAATTTATGAAGGAATAATTTtatgttttcctcagtttttGTTTCTTCCTGGATGTGTGTTTCAAAAAAGATGCATAGAAATCAATTGCAGAAAAGGTGGAGACACAATAAAGATCAAATATGATACTTGGTATGCGTTTTGCCACTGCTTATTTTCCTCTTATAACCAACTCTATGTTAACACCTTttattaaaggcccaatgcagctgtttttatatcaatatcaaataattgaTGGGTAACAATTTAAGTACCATACTGTAATAGGTTTCCatttaaaatgggcaaaaataggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47670 lncRNA downstream 201420 39113322 ~ 39113632 (-) True G42429
TU47661 lncRNA downstream 211507 39103062 ~ 39103545 (-) True G42420
TU47659 lncRNA downstream 214679 39100132 ~ 39100373 (-) True G42418
TU47657 lncRNA downstream 217710 39097138 ~ 39097342 (-) True G42416
TU47650 lncRNA downstream 222309 39092532 ~ 39092743 (-) True G42409
TU47864 lncRNA upstream 53047 39389371 ~ 39390941 (-) True G42605
TU47933 lncRNA upstream 138462 39474786 ~ 39475050 (-) True G42661
TU47935 lncRNA upstream 142686 39479010 ~ 39479259 (-) True G42663
TU47939 lncRNA upstream 145320 39481644 ~ 39486010 (-) True c1h15orf40
TU47941 lncRNA upstream 151708 39488032 ~ 39488448 (-) True G42668
LOC118966691 mRNA downstream 199955 39100825 ~ 39115097 (-) True LOC118966691
XM_021600757.2 mRNA downstream 230734 39081003 ~ 39084318 (-) True LOC110522389
LOC110520456 mRNA downstream 295961 39015075 ~ 39019091 (-) True LOC110520456
XR_005051684.1 mRNA downstream 1248447 38065959 ~ 38066605 (-) False LOC118964575
XR_005051686.1 mRNA downstream 1253389 38061089 ~ 38061663 (-) True LOC118964577
NM_001160543.1 mRNA upstream 20809 39357133 ~ 39359660 (-) True kip1
NM_001165166.1 mRNA upstream 145277 39481601 ~ 39486009 (-) False c1h15orf40
XM_021600938.2 mRNA upstream 193844 39530168 ~ 39543307 (-) False si:ch211-59o9.10
XM_021600928.2 mRNA upstream 193844 39530168 ~ 39543310 (-) False si:ch211-59o9.10
XM_021600945.2 mRNA upstream 197983 39534307 ~ 39543311 (-) True si:ch211-59o9.10
TU47067 other downstream 293027 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1123316 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1189327 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1598019 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 2804223 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3702404 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6384481 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6612634 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7728450 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7952615 47288939 ~ 47289681 (-) True G51285

Expression Profile