RNA id: XM_021602813.2


Basic Information

Item Value
RNA id XM_021602813.2
length 4157
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC110523755
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45325909 ~ 45414664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCTCCTCTAAAGACTTTGTCAGGCTTTATCCGGCTCCGGTTTGTCGGCTATAACTTCATAACATTTTCAGTAGTCAACTGACTGAGATAGAAGTTGGATACCTTGAAGTTTATTGCTCGGTGGAAACGTTGTTTATTCTGGACAAAACAAGGCGTTTTGATTAGGACAGCTGTCATTTTGAAGTTCGTTTCAATTGACACACAGATGTCAGTGAATGACAGTCTGTTTCTCATTTGAGCGTGAGTGTACGACTGACCGACTATTCAGAACCCGCTGAGATGAGTCTGATCATAGTCTAACTAAGCCCGAGAGCGGCTGTAGACAGAGCGAGGGAGTGACGGACAGATCAAGTCTCCAAAACAGAAGATGGGTGaaaaggaggatgagaggagtgcCCAGGCAGGGCAACTCTTTGAGAATTTTGTCCAGGCGTCCACATGTAAGGGCACTCTGCAGGCCTTTAGTATCCTATGCAGGCAGATGGATCTGGACCCGCTAGACTACAGGAACTTCTACAGCAACCTCAAAGCCACGGTCACCAATTGGAAGGCCAAGGCCCTCTGGACCAAACTGGACAAGAGAGCCGGCCACAAAGAGTACAAGAAAGCCAAAGCCTGTGAGGGCACCAGGTCTTTGATCATTGGAGGAGGGCCCTGTGGCCTGCGCACAGCCATCGAGCTGGCTCTGCTGGGGGCCAAGGTGGTGGTGATTGAGAAGAGGGACACCTTCTCCAGAAACAACGTGCTCCACCTGTGGCCCTACACCATCCACGACCTCAGGGGCCTCGGGGCCAAGAAGTTCTATGGCAAATTTTGTGCCGGAGCCATAGATCACATCAGTATTCGCCAGCTCCAGCTCATGCTGCTGAAGGTCTCCCTCATCGTGGGAGTGGAGGTCCATGTTAATGTGGAGTTTGTTAAACTGCTGGAACCACTGGACAACCAGGAGAATGAAGGGCTTGGATGGAGAGCTGAGATTAGACCATCAAACCACCCCCTCACTGACTATGAATTTGACGTGGTGATCGGTGCGGATGGACGCAGAAACACGCTAGATGGTTTCAAGAGAAAGGAGTTCCGGGGTAAGCTGGCCATCGCCATCACAGCCAACTTTGTCAACAGGAACACCACGGCCGAGGCCAAGGTAGAGGAGATCAGCGGAGTGGCCTTCATCTTCAACCAGAAGTTCTTCCTGGAGCTCAAAGAGGAGACAGGGATTGACCTGGAGAACATTGTGTActacagagacaacacacactACTTTGTGATGACTGCAAAGAAGCAGAGTCTGCTGGACAAGGGGGTCATCATTCATGATTACATTGAAACAGAGAAGCTGCTGGGCCAAGACAACGTCAACCAGGAGGCTCTTCTCTCCTACGCCCGCGAGGCGGCCGACTTTGGCACCAACTACCAGCTGCCCTCTCTGGACTACGCCATCAACCACTGCAACCAGCCCGATGTGGCCATGTTCGACTTCACCTGCATGTGCGCCTCAGAGAATGCGGCGCTGTTCAGGGAGAAGTGCGGACATCAGCTACTGGTGGCTCTGGTGGGGGACAGTCTATTGGAGcccttCTGGCCCACGGGGACAGGCTGTGCTAGAGGGTTCCTGGCTGCCTTTGACACGGTGTGGATGGTAAGGGGCTGGGCGCAGGGCAAGACCCATCTGGAGATCCTGGCAGAAAGGGAGGGCCTCTACAGGCTATTACCCCAAACAACGACAGAGAACATCTCAAAGAACTTTGATCAGTACACCATAGACCCGGTAACACGGTACCCTAACCTCAACTCCAGCTGTGTCAAACCACATCAGGTGCGTCACCTGTTCATAGACGGGCAGCAGGACTCCTGTCCTCTGGAGCGGGTTGGACCCACACGTAGTTCTGTCAATCTCTCCAGACGAGAGTCGGACATCCGGCCCAGCCGCCTCCTCACCTGGTGTCAGAAGCAGACACAGGGGTACAGGGGTGTGGACGTCACCAACCTCACCTCTTCCTGGAAGAGTGGCCTAGCACTCTGTGCTCTTATACACCGCCTCCGGCCAGACCTCATTGACTTTGACTCCCTGAATGAGAAGGACTCGGCCAAGAACAACCAGCTGGCCTTTGACATAGCAGAGCATGAGTTTGGTATCCAGCCTGTGACCACGGGGAACGAGATGGCTCTGGACCAAGACCCAGACAAGCTGATGATGGTGCTGTACATCTCCAAGCTTTACGAGATGTTCCGCAACTCGCCTGCATCCATCACTGGTACAAGGGAAACGGATGAGAACAATGAAGCGAATTCATCGGAGTCTGCACACTCTGTTTACAACTTAATGAACCGAACACAGCCCAAAAAAAGGATCCCAAAGGATAACGGGAAGCTGGAGGAGAACGACCCGATGAACAAAAGGCGAAGAAAGGGCAGCACCTATTTAGAGGAGTTGTCCTGTCAGAGTGCCCCCCCTGCAGGTGACGGTGGGGAGCAGAATAAAGTGCGCTCGATGGCCACACAGCTACTGGCCAAGTTTGAGGAGAATGCATCGCCTGGCAGTTCCCTGCGCAATAAGTCTGATTTGAACTCCGACTCTGATTCAAGCCGTCCTTCATCTCCTTCTCTGGATATGGAGAACCCTCGCTTCGCTAAGCCCAAGAAACAGCCCCCTCCCTCGCCTCCACCCCCACGCCCCAAGTGGCAGCCGTCCATCTATATGCGACTCTTAGAAGAGCCTGCAGCCGTGGCGCAACCGACTCCCCTTCACGTTCCAAAAAGGTCCTGGAGTCCTCCTCCACGTGATGATCAAACACAGGCCTCTCCGCGCGCAGACTTGGTGCAGCAGAGAGTGTGGATTCCACACACCGAATCCCCAGATGACGTAGATTACCCAGAACAACCTTCTCCTGGCCCCACAGGGAAGGGCCTAGAGAAGCTGGAGCGAAAGATGAGCCAGAAAAAAGTGCAAACCGTAACTAGCGGGGAATTTAACAGGAAGAGTATAAAGGAGAGAGCTGTGCTTCTGCGTTCTATGTTTCCTGAGTCCGAGACTCCTCTAGTGAAAGAGTATAAGATGGATCGATCTACCTTTGTTCCTAAAATCACTTCAATACACCCTGTCCCTGAACCGTCTGCTCTGTCTTGCGTCTCTTCTCTTACCCCAACATCTCCTGTGCATCATTACAAGTGCGATGGAAGTACTGCATCAAGTAGACTCATTCAAACGCCAATCGAATGTCCTGTGAGTTATCAAGCTGAACCCTTCAAGCCTGACATGTCTGCCGAACAGTGCAACGGGAGTGCTGGATCAAGTATTCAAAAGCCAATCATTCGATTTGAGAGTTACGAAGCTGGCCCTTTAAAGTCCACCGAACAGTGCAATGGGAGTGCTGCACCAAGCGTAATGATTAAAAAAACAATTGATCAATCTGAACGCTGTCCTGCTGAGCCCTCTATGCCTGCCAAACAGAGGACAGTTGGGAAGGTCTCTTCTCACATAGGCGCTAGGGCTGAAACTCTAGCCATCCTTTATGAAACTGACCACAGGCCTAATGCCTTGCCGTGTATCGTGCGGAAGGAGTTCCCTCAGAACCTGGGAGGCAGTGACACGTGTCACTTCTGCTCCAAGCGTGTGTACGTGATGGAGCGACTCAGCGCTGAGGGCCACTTCTTCCACAGGGAGTGTTTCCGCTGTGACGTCTGCAGCTCCACACTACGCCTGGGAGGACACGCCTACGACTCCCAACACGGCAAGTTTTACTGCAAGCCTCATTATTCTCAGCGTCGTTCCAGCCTACAAAGTTCAAGCAAGTTCCTGAGGAGAATGGAGGACCAGGGACGTCTGACGTCTTCGCCGGACCGGAGTGACCCCTACTCGGCCACAGACAGCCTGCAGAGCCAGCCCTCAGAAGGTGGTTACCTCTCAGAAACCTCCTCAAAGGCTCTCTCATGTTCCTCCTAATACACAAAGCTGAGCTCATTGCGCTTGAGAGGATcctattttttttggggggggggcacaattCTGCATGTCAGCTCCAGAATATTTTGTTGTACATTTTAGTTGTTTAATCATTTGTCTGCTACCTTGTATTTTTCCATAGTGAATAAACGGGTTGCTTAATTTATGCTATTTAAAGCTGTAAgtataaataaatgtatttgatTACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55372 lncRNA downstream 1912 45338855 ~ 45339150 (-) True G49555
TU55256 lncRNA downstream 16490 45323205 ~ 45324572 (-) False G49456
TU55257 lncRNA downstream 16490 45323340 ~ 45324572 (-) True G49456
TU55339 lncRNA downstream 89849 45250943 ~ 45251213 (-) True LOC110523718
TU55326 lncRNA downstream 97069 45243773 ~ 45243993 (-) True G49524
TU55261 lncRNA upstream 21025 45435672 ~ 45451731 (-) True G49459
TU55440 lncRNA upstream 61916 45476563 ~ 45479422 (-) False G49619
TU55445 lncRNA upstream 62043 45476690 ~ 45479422 (-) True G49619
TU55595 lncRNA upstream 284509 45699156 ~ 45699878 (-) True G49759
TU55613 lncRNA upstream 309512 45724159 ~ 45724388 (-) True G49777
XM_021602711.2 mRNA downstream 19391 45304638 ~ 45321671 (-) True parvaa
XM_021602721.2 mRNA downstream 21010 45304638 ~ 45320052 (-) False parvaa
XM_021602672.2 mRNA downstream 41191 45257236 ~ 45299871 (-) False LOC110523724
LOC118964648 mRNA upstream 62006 45476653 ~ 45477841 (-) True LOC118964648
XR_005051867.1 mRNA upstream 62006 45476653 ~ 45539251 (-) False LOC110523834
XR_005051865.1 mRNA upstream 62006 45476653 ~ 45539253 (-) False LOC110523834
XR_005051868.1 mRNA upstream 62006 45476653 ~ 45549871 (-) False LOC110523834
XR_005051866.1 mRNA upstream 62006 45476653 ~ 45587077 (-) False LOC110523834
TU52237 other downstream 2212033 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 6319037 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 7149326 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 7215337 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 7624029 37716540 ~ 37717033 (-) True G40079
TU55610 other upstream 306158 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 534311 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 1650127 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 1874292 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 1962994 47377641 ~ 47378543 (-) True G51649

Expression Profile