RNA id: XM_021602882.2


Basic Information

Item Value
RNA id XM_021602882.2
length 1577
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110523825
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 45466496 ~ 45471513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCCCTCCCCTAGGTGTCCTTGGTGCAAAGGTCTGACTCCAGGGCCAGAGCCTAGCTAAGCCCAAACTCACTGCCTGGATCCTGATCACACTGACCACACtgcagaggcagacagagagcaaCACACCTGACACGCACTTACCCGTCATGGAGAGTCTGACAGTACCTGTTGTGGTTGGAACGTCTGTGGTGGTCCTCTCTGGGCTCTACTTCCTCCTCCGAGGTGATAAGAAGAAGAAGCCGCTTCCACAGACACTACAAGACTCTACAGTTAAATATCCACTGCCACTCATAGAGAAAGAGGATATAAGCCATGATACAAAGCGCTTTCGCTTTGGCCTTCCCTCTCCCACACATGTCCTTGGACTGCCAGTAGGACAGCATGTGTACCTGTCAGCTAAGGTGAATGGGAGCCTGGTCATCCGGGCCTACACTCCTGTCTCCAGTGATGAGGACCAGGGCTTTGTGGACCTGGTGGTCAAGGTGTACTACAAAAACACTCATCCTAACTATCCTGACGGAGGAAAGATGTCCCAGTACCTGGACGCCATGAGCATTGGGGACAAAATAGATTTCAGAGGACCCAATGGACTCCTTGTATACACAggaaatgGCAAATTTGCCATTCGACCTGATAAGAAGTCTGAGGCCAAGGTCCGCAAGTTTAAACATGTGGGAATGATCGCTGGTGGAACAGGGATTACCCCCATGCTGCAGCTGATTCGCAGTATTACAGGAGACCCTGCAGACAACACCAAGTGCTCGCTCATATTTGCTAACCAGACTGACAAGGATATCCTACTGCGGGATGAACTAGAGGAGGTGCTGAAGAGTCACTCTGACCAACTCAACCTGTCCTACACTCTGGACAAGCCTCCACAGGACTGGAAGTACAGCTCAGGATTTGTGAACGCTAATATGATGAAAGAGCACCTTCCCCCGGCATCCAACGATGTGCTTATTGTCATGTGTGGCCCACCCCCCATGATCCAGCATGCATGCCTCCCCAACCTTTCCACTCTGGGCTACAAGACAgagaacacattcacatactAGTAACTCCCAGGCCCTTCAACTAGGCATAGAACCCCATATATACATTAAACTGCACCAGGACATTTGAGACCATTGGTTATATTGACTTATCTGTGTAGAATATAATGTAAAAGCCTACACTACAAGACCAAATTGATATTTTCTAGGGGTTTTAATAAAAGAAAATGTAATATTTGCATATTTAACATTCAAAGAATAGTTTGAACTGTTTTGTGTTAGAAAGACTGTAATAAGGTTGGTTGGGTTTTGGAATGTTTGGACTGTTCCAGTAACAATTTGTCTAGATGAGTATTGTCTCTAAAGCTTTTTGACGTGCTATttttaaccctcctgctgtgttcgggttgaattggaccgatttacaagttctctctgaaaaatgtagttcatttcatctgattgtcataaggttccattactttttccacacagggcatctgaacacacaaaatacatttttatgattttcattacattttgggtgttttatttatcGTTTGTACACCTGTAGTGTTCCCG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00326 E1.6.2.2; cytochrome-b5 reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54923 lncRNA upstream 41703 45424592 ~ 45424793 (+) True G49146
TU54871 lncRNA upstream 114188 45350934 ~ 45352308 (+) True G49103
TU54870 lncRNA upstream 117837 45346523 ~ 45348659 (+) True G49102
TU54861 lncRNA upstream 139116 45327105 ~ 45327380 (+) True G49095
TU54857 lncRNA upstream 140096 45324868 ~ 45326400 (+) True G49092
TU54963 lncRNA downstream 33276 45504789 ~ 45515074 (+) True G49183
TU55003 lncRNA downstream 98371 45569884 ~ 45570473 (+) True G49221
TU55071 lncRNA downstream 182884 45654397 ~ 45703120 (+) False G49288
TU55070 lncRNA downstream 230993 45702506 ~ 45703120 (+) True G49288
TU55119 lncRNA downstream 258728 45730241 ~ 45731622 (+) False G49335
XR_005051863.1 mRNA upstream 11669 45452036 ~ 45454827 (+) True LOC118964647
XM_021602869.2 mRNA upstream 20083 45427670 ~ 45446413 (+) False LOC110523812
XM_021602851.2 mRNA upstream 20083 45427673 ~ 45446413 (+) False LOC110523812
XM_021602860.2 mRNA upstream 20083 45432907 ~ 45446413 (+) True LOC110523812
XM_021602621.2 mRNA upstream 351148 45093874 ~ 45115348 (+) False LOC110523687
XM_021581733.2 mRNA downstream 670493 46142006 ~ 46159522 (+) False wt-t1a
NM_001124294.1 mRNA downstream 670508 46142021 ~ 46158684 (+) True wt-t1a
XM_036978570.1 mRNA downstream 778206 46249719 ~ 46266640 (+) False LOC110523948
XM_021603124.2 mRNA downstream 779559 46251072 ~ 46266640 (+) False LOC110523948
XM_021603161.2 mRNA downstream 779559 46251072 ~ 46266640 (+) False LOC110523948
TU54914 other upstream 48316 45414706 ~ 45418180 (+) True G49142
TU54730 other upstream 319856 45145278 ~ 45146640 (+) False G48976
TU54725 other upstream 320363 45145278 ~ 45146133 (+) False G48976
TU54641 other upstream 394067 45071354 ~ 45072429 (+) True LOC110523657
TU53576 other upstream 675406 44789630 ~ 44791090 (+) True G47910
TU55125 other downstream 263540 45735053 ~ 45736780 (+) True G49335
TU55851 other downstream 520760 45992273 ~ 45992891 (+) False G50010
TU55850 other downstream 520992 45992505 ~ 45992891 (+) True G50010
TU56623 other downstream 1386395 46857908 ~ 46861464 (+) True LOC110524042
TU56739 other downstream 1755733 47227246 ~ 47258898 (+) True LOC110520864

Expression Profile