RNA id: XM_021603083.2


Basic Information

Item Value
RNA id XM_021603083.2
length 7917
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110523921
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46025778 ~ 46076741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGGTGCCCCGGGTGAGTGGTGATTTCCCttaaggaccaatggaatggtctaatATCAGTTAACTCCGCTCCCTTGGGGAACCGGGCCATGCAAAAATAACTCTGCCAGCGGCTTTGACGATATCGTGCTCAGAAGTCAGCTCGTAATGTGTCGATGGTTGATTTCTCTGGTCTTGCTCTATGACTCTTAAACATTGCACACGCAATGGGGTGGGGAGACTTTTTCTGCTGGCTTCCAACATAGCTAGTGCTAGTTGATGAAATAACGAGCAAAGTGCTGAAACTGCACGGCCTCTGGGATAACTGGTTCCAACAAAGATTAGAAATATGGGCTCCGTTACCCTTTAAACGAAAACAAGAGCCACTTTTTTTGCGAAACTGGCAGTTGTTGACTACGCCGTGGACGAAGACTGGTTTCATTTAACGGTGTAATACGTATGGCCTCAAATGTTGGTCTACCCACCAGATGTTTATCAAACACAAACGAGTGCCTTTTGCAGTGTGAAGAAACAGAGTTGAGTTcaacagctgttttttttttttatgattggACCCTGTCGACCTATATAATTGGAATAAACCTTGGCATTGCCCAGCCTACCAATATCCTCCATTTAAGACAAACTTCAACATCTGGTAGACTCCTGAGTGGGCAGGACATATCTTTGCAGGCCACTGCATCCCTGAAAGTAGTACACAGTGAGTTGCTCCAAAAAACACCTCGGACCCAGGACCAGGGTCCCCCCGTCAAGGCAACTGTCCAGAGAAGCCGGCACAGCAGTGGAGCTACAGGGGCAGTCAGACTGGCCAGAGGGGACTGTGGCCAGAGAAGCAGCAGTGAAGGAGGTGAGGAGATAGAGAGCGAGGGAGGTTTGAACTCATTGAAAAGCCCCCTGCAATGTGGGCTGAAACGTCAGGGTGAGCACCCAGAGAACAGTGGGAAAGCCATGCAGATAGTGGAGGACGTTTCCATGATACCTGCCATGTTGCAAACTAACATAGGGAACACGGTGGGGGGAGTGCCCCGCAAACAGAATGGGGGAGGGACTGGGGCTCGCAATGTGGTCGGGGATGGGGACTACCAGTTGGTGCAGCACGAGGTCTTGTGCTCCATGAAGAACACTTACGAGGTGCTGGAGTTCCTGGGGCGCGGCACCTTCGGACAGGTGGTGAAGTGTTGGAAGCGGGGCACAGGAGAGGTTGTGGCTATCAAGATCCTAAAGAACCACCCATCGTACGCGCGACAGGGCCAGATAGAGGTGGGCATCCTTGCCCGTCTGAGTGGCGAGAATGCAGATCAGCATAACCTGGTGCGGGCCTTTGAGTGCTTCCAGCACCGCAGCCACACCTGTCTGGTGTTTGAGATGCTTGAGCAGAACCTCTATGACTTCCTCAAGCAGAACAAGTTCAGCCCACTGCCATTGAAGGTGATCCGGCCGGTCTTACAGCAGGTGGCCACTGCGCTGAAGAAGCTCAAGAGCCTGGGGCTGATCCACGCTGATCTGAAGCCAGAGAACATCATGCTGGTGGACCCGGTGCGACAACCTTACCGGGTGAAAGTGATCGACTTTGGCTCGGCCAGCCACGTGTCCAAAGCTGTGTGTTCCACGTACCTGCAGTCACGCTACTACAGgGCTCCAGAGATCATCCTGGGTCTGCCGTTCTGTGAGGCCATCGACATGTGGTCCCTGGGCTGTGTCATCGCTGAGCTCTTTCTGGGCTGGCCCCTCTACCCAGGAGCACTGGAGTATGACCAGATTCGCTACATATCTCAGACACAAGTGTTGCCGGGGGAGCAACTGCTAAACGCGGGGACCAAGACATCCCGCTTCTTCTGCAAAGAGTCCGACTCGCCTTATGCTTCCTGGAGACTGAAGACGACAGAGGAGCATGAGGCTGAGACGGGGATGAAATCCAAAGAGGCCAGGAAGTACATTTTTAGCAGTCTGGATGACATAGCACATGTGAATCTGGTGCTGAATATGGATGGCAGTGACTCGCTGGCAGAGAAGGCAGACCGGATGGAGTTTGTGGGCCTGCTGAAGACCATGTTGCTGATTGATGCTGAGAAGAGGCTTGCTCCCTCAGATGCCCTCAACCATCCCTTTGTCACCATGCAGCACCTTCTTGACTTCCCCCACAGCAATCATGTTCAATCGTGTTTCCACATCATGGATGCCTGTCAATCACGTCCCAACACTTACGATACACTCAACCGCAACAAAGCACCGTTCCACAGACCCTCAAACAACTCAGCTGGACTGCCAATGGCCTTCAATAAAATGGGATCGGTTCACTCCCAGGCTTTGACGCAGGCTTTGACGCAGTCTGCTCCCTCTGTGATGCATCCTGGGATGCTGCAGACTGGAAATGGTCAGTTTGGGTGTAACGACTCCTTTCAGCCAGCCCTCATCCTTTGCCCCCCAACCATGCAAGCTAACCCAAACCAGTCAGGATATGCAGTTCGGATGGAGAGCACGATACCAATGGTGAACCAAGCCCCTCCCATACAGCCTTTGCAGATGCGACCTGGAGTTATGGCACAGCAACCGTGGCCAAGTAGAGGCCAGCAAATCCTGGTACCAGCCTGGCAGCAAGTGGCTCCTCCTACCTCCTCTATGGCTTCTGATAATGTGGCTGGCCCACAGAGGCTCAGTGACTGGGGGAAAGTACGGCAACACAGCAATCATTACaccaacatgatgcagccaattCTAACCAACCAAATGACCATATCCGGTCCACAACCAATCAACATTGGTATTGCACACGTGGTGTGGCCACAGCCGCACGCCAACAAGAGGAACCAGACCAGTCAGAACAGGAGCATGAACTACTCACACAACAACAGGGACATCCAAATCTCAATGTGCCGATCTCCAAAGATGTCCGACCGTGTTAGTAACACAGGAGGAGGCGATTTGTCCCATCGGGAGAGGCCTGTGGAGGTTCAGCAGGAAAGAAGTGAAGAAGTGAGCTGCTGTAAGGCAGTGGAGGACGAGCGGATAGATATGTCCCACCAGCAGCGAGAGTCTGCGGTCATCGATGACCTACCCAGCCCCACCCTCAGCGTAATCAGTATCAGCAGTGACACGGATGGGGAGGAGGATTCTTCCTGCAGGTGCAAAGGCGGCTCTGACTGCGAGGCTTGTAAGGGCTCTCTGAACATGGAGAGGGTGTGCTCCCTCAGCAGCCCAGACAGCACCCTCAGCACCAGCTCCTCTGCCTCGGTGCAGTCCAGCCCGTCCCCCTGCAAGAGGCCCAACAGCATGTCTGAGGATGATGGTCATGGGAGCGGCTGCGAGACGGTAGACGGTTCCCCCGCCTCGGACTCCAGCCAGAGCCACAGCCCCTACCTGGAGAGCCGCTACCTAGGCAACCACAACCATCAGTCCCTGGGTATGACGACGCGTGGCATGGACCCTGAGAACGATCCCAGCAAGCTCCCAGTGAGAACCATGGTGGTGCCCCCTATGAGGGTGgtgcagaacaacaacaacatggaccaGCACACAGACAGAACGGTCTTCGAAATCTCGTGCCAGTCCAAAGGGCGTTGCGCCCCCGGACGACTGAACCACCATTCCACACCTCTCCATCCCCGGCAGCAACAGAAGATGACCGCGTTCCAGCAGCAGCCCCTGGGCTTTGGCCAGGTCCAGCATTACGGCTCCTGCAACAAGGAGTGGAACGGAAACTATGGGCAGCACCGGCGGCCGCACGCTTACATCCCTCCCACGGTGCACGGCCATGCTTTCACCCTCCCCCACAGCAGCCCCACCCACAACTCGGGACACCACCCCCAGGCCGCCCTACTCTCCTACCCTCCCTCGGCGCCCGTCGCCCACCTTCTGGCCTCGCCCTGCGCCCAGCGGCCCGTTCTGCAGCCCACCTACGGCATTGTCCACCAGGTGACCATGGGCATCAACCACCGGCTGCTGCCCTCACCCACCATCCATCACCAGGGCCAGTACAAACCCCTCTTTCCACCACACTCCTACATCGCCTCGCCCGCCTATACAGGTTTTCCCCTCAGCCCCACCAAACTCAACCAGTACCCTTACATCTGAGAACCAGCCACCCAGGGCCATGGGCCAGCAAGGGCAGCCAGCAGTGACAACTACAACCAAGGCCTTCATCTGTCATCTCTCATGTTATGACGGATAAAGAATCCCCTTTGACTTTAACAAATCATGTTGGTTGATGGTGATGATAATAGAATTGAAACCGTTAGCtttaaaaatataattaaaaaaaCATAATGGAAAAAGAATGAATGAATCAGTGAATGATTAAGAAATTCTCACTTAATGTGTTTTTGCACATTTGCTCTGCTTTGTCATTTGGATCGAATGGTTCTCTCTATGAAATGGGTCAAATGGAGGGTTAGAGGTCGTTTTCTCAACCCCCACTTTTCCTGTTTTTCTGTATTGCCTTCTATCTAGCACGTGTGCTAATCACATCACTCGTTAAGCCATCCCAATCTCCAGTGCTAGGACAGCAGAAGTTTGTCTCCGTTCGTTTGTTGGTTCATTGTGGTGTAAAGGTGTTAGTGTTTGCTAATGTCCTCTGTGTTTTCAGTGTGATACCGTCAGTGGTCTGAAAAGGTTGTTCCACACGCTGCATGACGTCGCATGGGCAAAATAACTTAGTCGAGTCGTTGACAGATGCTTAGATGTCACTCTTTCTATGTGTACTGTGAGACTTGCTGCATCGTAACTTGTTCCCACACCTACTAGTGCCTTAAATATATGAGGTTGTTAATGTTACTTatcgcatatatatatatatataaatatataaatgtacTGGACTGCAGCACTTGAAGATTATTTTTACTCTGATATGCTTATCAGATAATCAAATAAGTCTTGCTTATTTGGCCTCATTGTATATTTGAGTAGTTGAGCCTCTTTTACCAGAGGACGCCAGCATGCTTTGCTGTGGCAAATGTTTATTTGGTTTGGACTTTTCCCAAATGAACTAATGTACATAAAACAGAATTTGAAtgattttaatatttgataatcAATTTCTAGTCACTTAGTACTTAATTACTAACAGTATTGACACTgtttttttgaaactgcagtacAATCTAGATATTAGGCGCTGGTTTGCTGTGTTATGGTTTTTTACAGCCTTTTTCTTAGATTAATACTGATGTGAGGCATAACGTTGACTATCGACAAACATGCAAATAGTTGGTTGGTTCTTGGTACAGTATGATCTCATTATCTTCAGAACACCTATACAGTGTTTGATATACCCATCTATCAACCTACAGTATAATTGCTGGACTATGTAGTGCTTGACAAGGTGTATTGGTTGAGTGCAATTTGCTTTCATTGTTCCATTTAAAGATTTGTCGTCGTCAACTGCTTAGTGCTTATTTTCTACATTCCTTCAGGGaggaaatatattttgaattttgTTTTTTAATTGCTTGCATGAGCATTAGATTTTTGTCTTTCCTTACTTTTCAAATGCTCTTTCAGCACCAAAGACTAATTCATATCCTAAGCAAGGTAGCTACTCATTTTCCGTTGACCTCAAGTATTCTGGAGTCATCGAgatgaaatatattttaaaaaggtTTGAGGTTTTATTTTCAGCATTTTGGGCAAGTATGATTATATTATGTATTGAATGTATCCTAGATAAGCTGCTAGCTATGTACTGATTGCCACATCAAAATGATTAACTTAGTTCTTACTGTGTTCTTACTTTTGTATAGTTTCAATTACCATATAATAGAGGTGGATTTTATTTTAGTATAGAGTATACTTAATGGCATTAAGACTTGTTAGTGCCTCTGTATATTTGCTTTGACGTTTTGAAGTGCGATTGTATCTACTGTATTGCAAGTAATGGAATTtagctttttttttgtgtgtgtgttttttcttttGTGTGTGCCTATAGCATCAGTATTTTTATCTTATTAAATATAGGTTGGGTTCATCATTGCATACAGTAATTGATGTGTTGACAATTTTGTGTTGATTTTTAGTTATTGTTCTGTTAACACGCTCAAAAGCCTACATCTTACTCGCATTACCATTGATTGACAGATCTGTATTACCATGCAGATATATTTACTGCAACACATCTATTTGGTCCTTATCTAAACATTGGGCTACAGAGAGGCCTTCTTCACATACGTACTATTTGTTATGAAATGGATCAGTAAGCACTTGTTCAAATTTATTGAACTCTCAATATGCTCATCAGGTTCAGTATAAGGTAAAATCCCACACAGTTTTCATGAAATTGCTGTGCTCTGTGGACTTTGACTATATGATTTCTTTTTTAGGCATTTATTTTAAGCCTAAGAAAATGTTCTAAACCCACTTTTTGTATCTAAAGTGGATTGAGAGGGATCTTCTACAGATTATTCTGACCTATTCCTAGTTGATTGACTGAGGCAAATGTGTGGGATTTTTCTTCAATCTTTAATCCAAACAAGGGGGATTGTCAAATGATGACTGATCTTTTTCGCTTTCAAATCTTGCCACTCCTTTTGTAGTTTCATTACATTGTGGACTGAGAGATTTGTTTAAATTTGTTTACTCACTAGCCCCACAACCCCGGACACACACGGATGCATTTTTTTGTCATTCTGACTGTCTATAACCAACCTAGTGCCTTTTTAGATATGTGGTCCAGAGAATAACTGTTTGTCGATAACTCCCTGACCCCTAGGCAGTCCCCTCTCCCGCAGAGGGGTGGCAGTAGAGTCAGATGTGGACGCTCCTCAACAGAATAGAGTATTACACATCCAAGCGGCAGGATGTTAGGATTAAGCAGCCTCTTGTTATTTCAGGACTTCTGCAGCCTGTCTCCAAATATGTTTTACATGTTTGCCATCAGTGAGAAAGCATTCTGCTTCTGGACTCGTGTACAGTGTAATAGAGCTGACAAATCCAATGCATTCTTCTCTCTTGAGAAGCTCTTATGGGTGCTGGCTTCTATCTTCAGATCACTCAACCCCAATGCGCAACCTTAGACCATATGGTCTGAATCCATAAAGCTTTTCTACAGaatataaaaatacaaatgttatTCTTAGTCAGGGAATATTTTTTTACACTCTTCACCCAAGACACAGTTTATCTCTTATTGGACATGCACAAATGCAAAGCTTTACATACAATGTGAATGTATATGTGGAGTTGAACATATGGTTTGCGGACTTGACAAAATAGTTTTGTTTTAGTTTTCGATTGGCTACAGAGAATTCTGTTCTGTGTATATGATCAACATCCATATAGCAGCCTTAGTTTTGATGTATCACTTGTTGGTATTTGCTTTAACATCCCACGTAAATATTAGGTCCAAAGTTGTCACATATACTGCAATTGTATTGTTTTATGACTTCCTATATGATTCATTCAGGGTCttttgtattctactgtattaacCTTCCAATCCTTACCACTTTGTTTGATTGCTTTGGATCTTTTTTTGCAGTAATTTCACCTGTTAGCACAAGTTGTATTTCACTTCAATTTATTGGGTAATATACGGTATCTAAACAACACAGCATATAGACTTGATTGTGAAATTGGAACTGTTACTGGTTTAATGTGTAGTTTTTGTGGCTTTATGATTTTGTTTGCTTTTGATTTTATGCTACACTAGTTTGCCATGTAGCAAATGCACtgtgcaatatatatatatatatatatatatatatatatatatatatattatgaggACTGGGACAATTTATTATTTTGGATGTAATGTCTTTTACAGTTTGCGGTCGTATTTCTCTCTAGTTCTCAGTGATTTCAATGTGACCAAGCATTATGTACTTTGTCATAAAAAGCGGGTTTTCCTGGTGAATATTGGCGAGTGTCAAATTAAGAATTGGTGTACTATTGTCAAGATTCactttgaataaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56128 lncRNA downstream 8456 46016072 ~ 46017322 (-) True G50234
TU56127 lncRNA downstream 9911 46015660 ~ 46015867 (-) True G50233
TU56124 lncRNA downstream 20271 46005299 ~ 46005507 (-) True G50230
TU55841 lncRNA downstream 45282 45979652 ~ 45980496 (-) True G50001
TU55837 lncRNA downstream 48404 45977125 ~ 45977374 (-) True G49997
TU56156 lncRNA upstream 33923 46110654 ~ 46110971 (-) True G50262
TU56177 lncRNA upstream 79994 46156725 ~ 46159520 (-) True G50282
TU56203 lncRNA upstream 116763 46193494 ~ 46194056 (-) True G50306
TU56204 lncRNA upstream 117761 46194492 ~ 46194720 (-) True G50307
TU56255 lncRNA upstream 184344 46261075 ~ 46265574 (-) False G50357
XM_036978514.1 mRNA downstream 573 45987946 ~ 46025205 (-) False LOC110523913
XM_036978522.1 mRNA downstream 573 45987946 ~ 46025205 (-) False LOC110523913
XM_036978528.1 mRNA downstream 573 45987946 ~ 46025205 (-) True LOC110523913
XM_036978497.1 mRNA downstream 574 45987946 ~ 46025204 (-) False LOC110523913
XM_036978506.1 mRNA downstream 575 45987946 ~ 46025203 (-) False LOC110523913
XM_036978555.1 mRNA upstream 8851 46085582 ~ 46097005 (-) False tcp11l1
XM_021603095.2 mRNA upstream 8851 46085582 ~ 46097106 (-) False tcp11l1
XM_021603103.2 mRNA upstream 8851 46085582 ~ 46097107 (-) True tcp11l1
XM_021603297.2 mRNA upstream 660704 46737435 ~ 46743033 (-) True LOC110524015
XM_021603330.2 mRNA upstream 740325 46817056 ~ 46838556 (-) False LOC110524028
TU55801 other downstream 75827 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 304654 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 2896749 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 7003753 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 7834042 38187488 ~ 38191736 (-) True G40768
TU57229 other upstream 988043 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 1212208 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 1300910 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 1465645 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 2217377 48294108 ~ 48304136 (-) True LOC110524264

Expression Profile