RNA id: XM_036978615.1


Basic Information

Item Value
RNA id XM_036978615.1
length 2002
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110523948
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46249719 ~ 46267255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTCAAAGACCACTTTGCCCGAGGGAAAAGGAGCGACAAGATTACAGTCTTCTCCCATGGCTTGAGAGAGTACTTTCTGCTTATCCGAAAGGCATTAGGCTAATTGATAGTCTTCAACATAGCAATTGCAACTCGTGAATGTCGGCTGAGTTGTTCCAATGAATGGATTTACAttgagatttttttatttttttttacacttgtTGATTTCAACCAATTCAATCCGCAGTCAAGTAACAAGATAACTCAACCACAAGACAAGAACAAGGCGGATTACGTCTTTCCAAATAATTCAATTATCCATTGGTGCTATTGTTACAACAGGTTGATCTGGGATCTTCTCATTGAATTGAGTGAAGAGGAAGTAATTGGGGGATTTCCATCTCTATTCAAGATCACTTGGAAAATATATACAAGGACAATTATTCGACGGGGCTATCCAGCACTGTGGCTCCGTCTCTTTTGCGCTCAGACTTATCAACAAGGGCTTTGGCTGCAGTGTACACAGGATGCCTCAAAAAGAATACTATAACCGGGCCACGTGGGAATCTGGCGTTGCGTCCATGATGCAAAACAGTCACAGCGGAGTGAATCAGCTTGGCGGAGTGTTCGTCAACGGCAGACCCCTGCCGGACTCAACCAGACAGAAAATAGTCGAGCTTGCTCACAGTGGCGCGCGGCCGTGCGATATATCCAGGATTCTGCAGACCCATGGTGATGCAAAAGTCCAAGTGCTGGACAATGAAAACGTGTCAAACGGCTGTGTGAGTAAGATTCTGGGCAGATACTATGAAACTGGCTCCATCAGACCAAGGGCGATCGGGGGTAGCAAACCAAGAGTAGCAACTCCCGAGGTGGTCGGAAAAATTGCCATATACAAGAGGGAGTGCCCGTCAATCTTCGCGTGGGAAATTCGTGACAGACTGCTTTCAGAGGGGGTCTGCACAAACGATAATATACCCAGTGTGTCATCGATAAACAGAGTACTGCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGATGGCATGTATGAGAAGTTGAGAATGCTGAACGGTCAGACTGGGACGTGGGGAACCCGGCCGGGCTGGTACCCCGGAACCTCAGTGCCAGGACAGCCCAACACAGaTGGTTGCCCACCGTCAGACGGCGGAGGTGAGAACACTAATTCAATAAGTTCGAATGGAGAAGACTCGGATGAGACCCAAATGAGACTTCAGCTGAAAAGAAAATTGCAAAGGAACCGCACTTCGTTCACACAAGAACAGATAGAAGCGCTTGAGAAAGAGTTTGAAAGAACTCACTATCCAGATGTTTTCGCAAGGGAAAGACTTGCTGCAAAAATTGACCTCCCAGAGGCCAGAATACAAGTGTGGTTTTCAAATAGAAGggcaaagtggaggagagaggagaaactcCGGAATCAAAGGCGGCAAGCCAGTAACTCCTCCAGTCACATCCCTATCAGCAGCAGTTTCAGCACCAGTGTCTACCAGCCCATCCCACAGCCCACGACACCAGTATCGTTCTCGTCAGGATCCATGTTGGGAAGACCAGACACAGCCCTtacaaacacatacagtgcccTGCCACCTATGCCAAGCTTCACCATGGCCAACAACCTGCCTATGCAAGCTCCTGTGCCCAGCCAGACCTCCTACTCCTGCATGCTGCCCACCAGTCCCTCAGTCAACGGGCGGAGCTACGACACGTACACCCCTCCTCATATGCAGGCACATATGAACAGCCAGTCAATGGCAGGCTCAGGAGGCAACTCAACAGGTCTCATCTCTCCTGGAGTATCTGTTCCTGTCCAAGTGCCAGGCAGTGAAGCAGACATGTCCCAGTACTGGCCCAGGCTACAGTAGAGACACGACTACCGTCAAGGTGTGACTCCTCGGATATTGTCTTGAACGAAGAGGCTGTCCAGCAGTATTTAATTACAGACAAGAGAAAATAGACTCTAAAAGACACTATTTTGTACTGGGATTGTGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55960 lncRNA upstream 127850 46123021 ~ 46123223 (+) True G50098
TU55954 lncRNA upstream 138255 46112611 ~ 46112818 (+) True G50092
TU55951 lncRNA upstream 142232 46108624 ~ 46108841 (+) True G50089
TU55907 lncRNA upstream 158587 46051187 ~ 46092486 (+) True G50057
TU55884 lncRNA upstream 223297 46025782 ~ 46027776 (+) True G50036
TU56074 lncRNA downstream 6238 46272878 ~ 46273108 (+) True G50180
TU56076 lncRNA downstream 8777 46275417 ~ 46275638 (+) True G50182
TU56086 lncRNA downstream 25518 46292158 ~ 46292372 (+) True G50192
TU56088 lncRNA downstream 27763 46294403 ~ 46294610 (+) True G50194
TU56094 lncRNA downstream 39360 46306000 ~ 46306226 (+) True G50200
XM_021581733.2 mRNA upstream 91551 46142006 ~ 46159522 (+) False wt-t1a
NM_001124294.1 mRNA upstream 92389 46142021 ~ 46158684 (+) True wt-t1a
XM_021602882.2 mRNA upstream 779560 45466496 ~ 45471513 (+) True LOC110523825
XR_005051863.1 mRNA upstream 796246 45452036 ~ 45454827 (+) True LOC118964647
XM_021602851.2 mRNA upstream 804660 45427673 ~ 45446413 (+) False LOC110523812
XR_005050124.1 mRNA downstream 202856 46469496 ~ 46477752 (+) True LOC118962389
XR_005051349.1 mRNA downstream 232370 46499010 ~ 46503478 (+) True LOC118964304
XM_036989615.1 mRNA downstream 237174 46503814 ~ 46505112 (+) True LOC110532345
XR_005051353.1 mRNA downstream 238608 46505248 ~ 46508046 (+) True LOC118964305
XR_005053621.1 mRNA downstream 245896 46512536 ~ 46512590 (+) True LOC118966744
TU55851 other upstream 258182 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 258182 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 514293 45735053 ~ 45736780 (+) True G49335
TU54914 other upstream 832893 45414706 ~ 45418180 (+) True G49142
TU54730 other upstream 1104433 45145278 ~ 45146640 (+) False G48976
TU56623 other downstream 591268 46857908 ~ 46861464 (+) True LOC110524042
TU56739 other downstream 960606 47227246 ~ 47258898 (+) True LOC110520864
TU58177 other downstream 1740034 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 2113902 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 2626857 48893497 ~ 48893912 (+) True G53181

Expression Profile