RNA id: XM_036978702.1


Basic Information

Item Value
RNA id XM_036978702.1
length 9275
RNA type mRNA
GC content 0.56
exon number 40
gene id LOC110524008
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46632435 ~ 46736863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagttttggTGAGTTTGTATGTACCACAAAGATCCTCCTGCTGTACatgtctatatgtaggctacCCCAGCTGTGGAGCTTCTGTGTGAGAGTATGGCTGCTTTTGGCCAACCTTCCTAGaaagaagcggagagagagagagagagagagagaaagggagagagggagatttggagtgcttgtatgtgtgtgagtgtgtggagaGGTTTCTGAGATGAGTGGAAGATGCTGGCAATTCTGGTCGCCTCTAAGATGAAGTCAGGACTACCCAAACCGGTGCACAGCGCCCTGCCCATCCCTCAGGCACAGAACCTTGCCAGGTCCAGGACCTCCAGCCCTCACAGGGCCAGACCTCCAGCCCTCAGACACAGCCCCCTGAAAGCCCTTCACCGGCAGGGAGAGGGCCAGGGAAAGGGAGAGACGACCCCCACCCCCAACAGAAGCCTCTCCACCGCAGAGAGTGAAGACCGAGAGGACCCTCAGATTTACACGGACTGGGCCAACCATTACCTGGTGAAGTCGGGCCGTCAGCGACTGATCAAGGACTTGCAGCAGGATGTTACAGATGGAGTGCTATTGGCTGAGATCATACAGGTTGTCGCGAATGAGAAGATAGAAGACATCAATGGCTACCCAAAGAGCCAGACTCAGATGaTTGAGAACATCAATACCTGCCTAGGATTCCTGGCAGCTAAAGGGGTGAACATCCAGGGACTCAGTGCAGAAGAGATCCTTCATGGGAACCTGAAGACCATCCTGGGCCTGTTCTTCAGCTTGTCCCGCtacaagcagcagcagcagaaggtCTTGAAGCAGCAGGCCTCTCATCACCCAGAGCACAGCAACCAGCCTGGACATACTCCCCATGGGTCACCGGCCCCCGCTCAGACCCACACCCATCATACCCACAGCTCCACCGCACCAGCACACAAAGCAGCATCAGATATGCTGTCTAGTCTGTCATCCAAGGCTTCTTCCACTCAGAGTAAAGGGCTAAAGCTCTCTGTGGCTCAGAGAAAATCCTCTAGACTGCCAGCTCCCACCATGCGGGTCTCAGCTCCAGGCAGCGAGGGGAAGCCCCGCGCGGCCTCCAACGGCAACCGTCGCAGCCAGAGCTTCAACCACTACGACAAGCCCAAGCCCTCCAGGAGCGACAGAGAGAGAAGCTCCATGGCCTCCCCCATCATGACTGAGCATGGTCTGTCTCCAGGGCCCATCAATGCTTGCTCTTCTTCCTCCATCCCCCAGCCCGATGCAGGCAACAGCAGCAAGCCCTGGAGGAGTAAGTCCCTGAACGTCAAGCACAGTGCCACCTCCTCCATGTTGTCCGTCAAGCAGGACCCTCCCACCAGGCAGCCCGTGGCCCCACCCCTAGAGGTCCCCCCTAAAGTCATTGCCCAGAAGTCCATGCTGGAGAAACTCAAGCTTTTCAACACCAAAGGAACCTCCAAGGCAGCTGGAGTCCTGACTGACAGTCCGACGGGGAAGGAGACGGAAGCGATGGAGGTGCGCCCCACCGACGTGGATCCCCTGGAAGAGGCGAATGGGAACTCCCGGCCCCGCAGCTCAATGGCGACCAGCCCCAAACTGGCCCTGAAGGGCATTGCCCAGCGCACTTTCAGCCGGGCCCTCACCCCCAGGAAGAGCTCTCTGAAGACTGGGGAGGAGAAAGACAAGGCCAGGCTCAAGGAGAGAGACAAGGCCCAGGAGGAAGGCTCCAAGTTGGGGTCAGTCACAGAGCAGGAGTTACGCAGGGACAACACCAGGCAGGAGGTAGAAGGTTCAGACCCAGCGGAGCCCAAGAGGAATGCCAAGATCACTAGCTTCATCCCAAAAGGAGGCAAGGCTGGCAGTGGCACAAAGGAGAGCTCAGCCTCAGCAGCACACAGTGGAATACCAAAGCCAGGTTCCAAGGCAGGGAAGACCTCTTCTGGTCGAGATGGAGAGAGGCCCCGCACTTTGAGGGCCGGTGGGGGTGGTGGTCTCTCGGTGCACAAGGGCCAGCTGGACAGCAGAAGCTCCTGCTCCAGCCTGGCCGCCTCTGAAGGGAGGTCTCACTATCACCACACCAACAGAGTGCCCCCAGTCGCTACCACAGCCAGCAACACCATCAGTGTTCAGCTACCTCATCCTCAGCAGCAATACAACCACCCCAACACTGCTACTGTTGCACCATTCATGTACAGGTCTCAGCCAGATGTGACCGGATTAGACATGATGATGGAGGCAGCAGGGTCACTGGAGTGTCACAGGGAGACTGCAGCCTACAGCAAATCAGCACACAACTCCCTGTCGGACCTCACAGGTGAAGACCCTGAGGCCAGGCGCTTGCGGACGGTCAAGAACATTGCCGATCTGAGGCAGAACCTGGAAGAGACCATGTCCAGCCTGAGGGGAACCCAGATCAGCCACAGtacCCTGGAGACCACCTTTGACGGCAGCGTCACCACAGAGGTCAGCGGGAGAGGCATGCTCAACCTGTCCCCCCGCCCCAACCCAGCGCTGCCCTGGCGACTGGGCCCCTCCAGCCCCCGTCTGCAGGCGGGCGACGCCCCCTCAGTGGGGAACGGGTATGAGGTGGCAACACGGGACAGTGCCAGTCGCATGGTGAGCCCCGAGAGCGGGCGCTACCTCCGCGGCGGGCAGACACCAGGCCAGGAGAGGAACAGTGTGTGTGACCTGGATCCGCCAGATAAGACGGAGGAGCTGGAGGGCATCGCCATGGAGACCATGGGGTACATGAGCGACGGTGACGTGCTGGGGAAGAATCTCCGCATGGACAAAGTCTCCAGTGGCTACATGACGGACGGCGGGCTGAGCCGGTACACGCACTGCCTCAACCGCCTGCCAGATGGCATGGCCGCCGTCCGAGAGACGCTCCATCGCAACACATTCAAGGGCCAAGGGGACGCCACTGACAGTTGGGACGACAGCAGCTCGGTGAGCAGTGGGATCAGTGACACCGTCGACACAGATGACATCAACACCAGCTCCTCAGTCAGCTCCTATGTCAACACTCCGTCCGTCTCCTGCAAGGACCTAGAGGGCCAGCTCCAGACGGACGCGGAGAAGCACTCAGCCGTCGAGCAGAACTCTGTGTGGTCCGGCAGCGACGAGGTCAAGAGGTCGGACGGGGGCTCGGACAGCGGGTTCAAAATGGAATCGGGCTCCAAGTGGTGCCGCCGCCCCTCAGACATGTCGGACGAGTCGGGCAGGAGCTCCTCGGACCGCAAAACGCCTTCCATGGCCCACACGGGCTCCTGGAGGCGAGGCCTGAGTGCCCAGGTGGGCGTGACCTCGCCCAGGACCAAGGCACCTGTCACGCCAGTCTGCGGCACGCTGAAGACCCATGGGACAGGTAAAACGGACGACACCAAGGTGTCTGAGAAGGGCCAGCATCATCTCTCGCCCCGGGCCAACAGCAGTATGCAGCGCTCCCCATCAGACACGGGCCGCAGCAGTGGAGACGAAGCCAAGAagaccccctccacctccagctCCAGCCGCACCCCCACCACCAACACGTTTGGCTTCAAGAAGCACGCAGGAGGAGGTATGACCATGGTGACGGCCAGCGGAGTCACCATCACCGGTGGCTCCGCCACCCTGGGGAAGATCCCCAAATCAGTGCAGCTCCACGGGGGTCGGGGTCTTGGTCGCCAGGCCAGTGTGGATGATGGCTACCTGCCTGTGAGCTCCCACTCCACCCTGCAGTACCGCAGCCTCCCCCGGCCCAGCAGAGCCTCTGGCGGGGTTCGCAGCGCCAACCGCTCCTCCAGCACCAGCATCGAGTCCAACCTCAGCTCCAGGTCCAACACGCACCACGGCCCCAAAAGCCGCAGCCAAGTCCCCAAGCCTAGCGCCGGTGGCATCCCTCTGCCTGGCTCTGGATCTAACCAGACAGACAAGGAGAAGGGGGTGTCCTCTGAAGCCAATCCCATGGCCCAGGGCTCAGCAACTCTACCCCCTCAGGGAGCCAGGCAGCCAGGGGGAAAGTACCCAGACATCTCCTCCCCTACTCTGCGCAGACTGTTCGGAGGCAAGCAGGCTAAGCAGCAGGCCCCAGTCACCACCGCAGAGAACATGAAGAACTCCACCGTCATCTCCAACCCCCACGCCAACTCTGGCCAGCAGGGTGGCGCTCTGGACTCCCCCTCGGCCAGTAGCGGGGGCAGTAGCCCTCTGTATGGGGGTGGAGGTCGTCTGGGTGTTGAggcccattccctctcccccctggCTTCCAGCCCCGGCTCGGCCCTGTCCACCCCTTCCCACAGCCTGGCCTGGAGTAGCACCCTGAGCAGGGACACCCTGAGCCCCGGCTACCCCTCCCTCAGCAGCCTTGCCACCAGCAGCGAGTCCATCGACGTGTCCCTGGGCAGCGGTGGCCACGGACACCACGGCCATGGTCACGACACACTGCCAGCCTGCGTCAGGAACAACGGCATCAAAACGGGAATCTCAGAAAGTCTtagccccctctcctctccctcagctaGTCCCAAATTCAGCAGAAACACTTTACCCCGGAAACAGGACAGGTACGGCCACCTGCCCCAGCTGCGTAGTCATGACGACCCCCGGGACTGGCTGCGTTCCCACTCTGCAGGAGGTCTTCAGGAGTCTGCCGGCagctcccccttctcccccgcTTCCAGCCTCACCTCACCCTCCGGAGCCCGCTTCAACTTCTCCCAGCTTGCAGGCAGCCCTACCACAGCTGCACAGATCAACCTGGCCAACCTCCGAAGCGGCCTGGCCAATCAGGAAGGGCCGTATGACCCGTACAGTGAACGCCTGAGGAACTCGTCCATGTCTCTGGAGGAGAAGAGTCGCACCATGAGCAGCTCTGGGTCCTTCAGGGATGGACTAGAGGAGGTCCAcggctcctctctgtctctagtgTCCAGCACTTCCTCTGCCCACTCCATGCCGGAGGAGAAATCTCAGTCGGAGATTCGTAAGCTGCGGAGAGAATTGGACGCTTCCCAGGAGAAGGTGTCTGGTTTGACCACTCAGCTGAGTGCTAATGCTCACCTGGTAGCAGCGTTTGAGCAGAGCTTGGGGAACATGACCATCCGACTCCAGGGCCTTACCACCACGGCTGAGCAGAAGGATTCTGAGCTGAACGACCTGAGGAAAACCGTAGAGCACATGAAGAAGCAGAACACAGCAGCCCAGGCAGCCATCGACGGTGTCATCAACCTGCCAGAGCTCACATGCAAAGGTGATAGGCCAGCCTCAGCCAATGAAAGCCCCCAGTCTCAGCAGGATCTGTGTATCCGCAGACAGCACTCGTCTGACAGTGTGTCGAGCATCACCAGCGCCACCAGCCACTCCAGCGTGGGCAGCAACTTGGAGCTGGACGCCAAGAACAAAAAGACGAAGAAGAACTGGGTTTATGAGCTGCGGAGCTCCTTCAAGCAGGCATTTGGGAAGAAGAAGTCGTCCAAGTCTGCGTCCTCCCACTCCGACGTAGAAGAGATGGCCGACTGTTCCCTGCCCTCCTCCCCCAAGCTAACTGCATACAACGGCTCCACCGCCTCAACACCCATGATCCGGAACTCCCACTCCAACTCTCTtccatttctctctcccctgcctgttAGTGGGCGTGCCTGGGGCGGTATCACTGGGGTGTTGAGGACTGGTTCTCTCGCTCGGATCTCAGAGTGCACAGACAGCGAGGCGGAGACGGTGATGGCGCTCCGCAGCGAGCTCCGAGACAAGGAGATGAAGCTGACTGACATACGCCTGGAGGCCCTCAGCTCCGCCCACCAGCTGGACCAGCTCAGGGAGTCCATGAACCGCATGCAGGGCGAGATAGAGAGGCTGAAGACCGAGAACGATTGTCTGAAGATGGAGAGTCAGGGCAGCTGCAGCAGAGCAGCCTCACAGGCCTCAGTGGCCTCACCCTCAGTGGGCCAGTCACAGCATAGCCTCGCTCTAACAGAGTCCACCAGCCTCgACATGTTGTTGGAGGACAACGGGGACGGTAGCTCACGGAAAGAAGGACGACACGTCAAGGTGGTTGTAACTCTAGATGAGGATGCCAAGTGGAAAGAGGAGCGTAGACCTCGCCATTTCCTGATTGGTTGCATTGGTGTCAGTGGGAAAACCAAATGGGATGTGCTGGATGGGGTGGTCAGACGTCTCTTTAAGGAGTACATTATCCACGTGGACCCAGTGAGCCAGCTGGGTCTAAACTCAGACAGTGTCCTGGGCTATAGCATCGGGGACATCCATCGCACACGTGGGACTGACACCCCTGAACTTCTGCCCTGTGGATACCTCGTTGGAGACAGTGacaccatctctgtctccctcaaaGGTGTGTGTGAGCACAGCCAAGACGACTTGGTGTTTGAGACGCTGATCCCCAAACCCCTGCTGCAGCGCTACGTGTCCCAGCTCCATGAGCACCGTCGGATCATCCTGTCTGGCCCCAGTGGCACCGGGAAGAGTTTCCTGGCCAGCCGATTGGCCGAACACATAGTgctgagggaagggagagaggtcaCCGACGGGACCATTGCCACGTTCAACGTAGACCACAAGTCCAGCAAGGAGCTGCGTCAGTACCTGTCTAACCTGGCTGACCATTGCAACAGTACGAGTCATGGGGTGGACATGCCCCTGGTGGTAGTACTGGACAACCTGCACAACGTCAGCTCTCTAGGAGAGGTCTTCAATGGCCTGCTCAGCTGCAAGCACCACCgatgTCCTTATATCATTGGAACAATGAACCAGGCTACATCATCCACTCCCAACCTGCAGCTTCATCATAACTTCAGGTGGGTGCTGTGTGCCAACCACACTGAGCCAGTGAAGGGCTTCCTGGGTCGGTTCCTGAGGAGGAGGCTGATGGAGACGGAGATCAGCAGCCGGCAGCGCAACACTGAGCTGGTGAGGATCATCGAGTGGGTCCCTACTGTCTGGCATCACCTCAACCGCTTCCTAGAGTCCCACAGCTCCTCGGATGTCACCATCGGGCCCCGCCTCTTCCTGTCTTGTCCCATGGATGTGGAGGGAATCAGAGTGTGGTTCACAGATCTGTGGAACTATTCCATCATTCCCTACATGCTGGAGGCTGTCCGAGAGGGGCTGCAGATGTATGGGAGGAGAGCTCCTTGGGAGGATCCAGCACGGTGGGTGATGGAGAGCTACCCCTGGGCAGCCAACCCCCTGCAGCACGAATGGCCCCAGCTGCTGCAGCTCCGGCCAGAGGACGTGGGCTTCGATGGATACTCCATCTCCAAAGATGGCTGTCCCAGAAAACAGCTTCCCCAGGGATGCACAGACGGAGACCCCCTGatgaacatGCTGATGAGGTTGAAGGAGGCAGCCCACTGCTCCGGCAGCACTCAGAGTTACGACAGCGACTCCAACAGCAACCAGGATCCCCATGAAGACAACATGCTGGACTCACCACGGGAGTACACACTATGAGTCTCCCTCTGTCAGCTAGTACTCACTCTGGGACACATCCTAAATGAACATACCTTTTGCGTTAATCATCCATTGATATGAGGTTCAACGTTCGGTCATGTATTTCAAGTTAGAATTTGACCTCTGCGATTTCATGTCTTTAGGCAGTCAGAGCATCTTATATACCAGTTGGAACTCACTATTTACACTGTGTACTGATACATAAGATAATAAATAGATGTACTGGGTGCAGGTAACCTGAGATGGAAATCCCAGTCAAAGTTCAATAGCCTGAATAATTTCACCTCAGTATTTCTACTGTGTTCAGTGTTTATTAGGAGTCTGTTTACAGTCACAGACAAAGACACAGCCATATAGAATGAATGACGTAGTTTATGAGACATCAAACCAGTTGCCTTGACTGTGACCTAATCTAGGCTATAGCTATGTGGTCCAAACTGAGTAGCAAAAACTGTACATACGGTCACTCCGCTTCACAGAGCTTGACTTGTGTGCATTTTCTTAGTGAAGAGACATATTTTTGGTGCTTAACTTTCAAATGATGCCTTGCTGCCTTTATTAACAACGGTGGTCACATGCATTGACAATGCCTTTGATATACTTGATTTCTATAGAGGCGGTGCAGAGTTTAGGGGCTGCTAACTTGCTCGTACTTTGATGAAAATGACTCCACATCGTTTATGTGCAGCTAGCTGGTAGCGAGAAGGTCTAGGCTTTTGTTTTGGATATCTTGAAATCAGTGATACTTTTCGGATTGTTGGTGCTCTCCTGAGGAAGATGAGAACTTTACACCTCGTGAGCGTTTCAAACAGTATCCCAAAAGCCCTTGTTTGTCTTTTCTTCAGCTCTAGACAGAGCTCCATCCCTGCATGAAATGTTCCAACACGGTGTTTCCCTGTATAGAGGCGCATTGGACATGTAGACCCACATCTGAAAGGTCTCTGGCTAGAAAAGGATCAGAGCGACTGCATGGCTTTGAGACGGAGGCTGCCGTGTCTAGTCGCTCACTCTGAAGAATTAGCACCAGTTCCATTTGCGTCCAGTGTTAATGGGATCCTCGGAGTTGCTGTATTGGAGTAACTAGGCTTTATTCCCTCATAAAATGGAGTATTCTCAGAGCAGCTTACTCTACTACGAGGTACCACTTTGGTTGCTCCCCCTCACAATGTCCACGTTATCTGTCAGTGTTGTTGCTATTCATCCCATGAGTGTTCTTAGTAACAAATTCTTTGCAACATTCATTTGGAACTTTCGACTGAAACCAAAACAGTTTACTTGTATTTTTAAGTATTGTCAAGATTTGTATTGCAGGTACATTGATCTGTGAATATTTTGCAAGGTAGAAATGTTCACTAGCATATCTTGCAAGGACAAATCAAAGTGGTCGTTTGTCTTTTCTTGGTCCCACTCAGTTAGGATGTTGGAATGACGTGAAAGGTATGCTATTGAATCTAGTGGTTGATAATTATTGAATAGTTTGAATTTTGTTTatgcacatttttattttgtaatgTGAAGATGTATATATTTGATCATGAATCCCACGTTTTCAAAAAAAATTCTGTACATCTTTTACTAAACTACAGAGTAATGTGTGTAGGCCTACAGTTAGGCTTCCTCCACAGGTTGTTCCTTTTTCTATAAGAGTGAACAACTATGAGACTGTGAGAATAAATCTGGTCACAACACGGTACTTTCCATCTTTCATATTTTTAATTCATCGAGAAATCAATAAACCAGTGTTTATTTATTAAGTTGTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56415 lncRNA upstream 166885 46465282 ~ 46465550 (+) True G50497
TU56414 lncRNA upstream 167958 46464237 ~ 46464477 (+) True G50496
TU56413 lncRNA upstream 168248 46463977 ~ 46464187 (+) True G50495
TU56408 lncRNA upstream 171619 46460606 ~ 46460816 (+) True G50490
TU56383 lncRNA upstream 179452 46452689 ~ 46452983 (+) True G50483
TU56562 lncRNA downstream 21950 46758813 ~ 46759118 (+) True G50633
TU56571 lncRNA downstream 35877 46772740 ~ 46773045 (+) True G50642
TU56574 lncRNA downstream 41304 46778167 ~ 46778399 (+) True G50645
TU56590 lncRNA downstream 70483 46807346 ~ 46809439 (+) True G50661
TU56602 lncRNA downstream 100923 46837786 ~ 46838432 (+) True G50672
XM_021603263.2 mRNA upstream 56494 46525358 ~ 46575941 (+) False LOC110524001
XM_021603272.2 mRNA upstream 56494 46525358 ~ 46575941 (+) True LOC110524001
XR_005053621.1 mRNA upstream 119845 46512536 ~ 46512590 (+) True LOC118966744
XR_005051353.1 mRNA upstream 124389 46505248 ~ 46508046 (+) True LOC118964305
XM_036989615.1 mRNA upstream 127323 46503814 ~ 46505112 (+) True LOC110532345
XM_036978781.1 mRNA downstream 61623 46798486 ~ 46807202 (+) False LOC110524021
XM_021603310.2 mRNA downstream 61662 46798525 ~ 46810016 (+) True LOC110524021
XR_005051900.1 mRNA downstream 117367 46854230 ~ 46861465 (+) False LOC110524042
XR_005051902.1 mRNA downstream 117367 46854230 ~ 46861465 (+) False LOC110524042
XR_005051903.1 mRNA downstream 117367 46854230 ~ 46861465 (+) False LOC110524042
TU55851 other upstream 639544 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 639544 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 895655 45735053 ~ 45736780 (+) True G49335
TU54914 other upstream 1214255 45414706 ~ 45418180 (+) True G49142
TU54730 other upstream 1485795 45145278 ~ 45146640 (+) False G48976
TU56623 other downstream 121045 46857908 ~ 46861464 (+) True LOC110524042
TU56739 other downstream 490383 47227246 ~ 47258898 (+) True LOC110520864
TU58177 other downstream 1269811 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 1643679 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 2156634 48893497 ~ 48893912 (+) True G53181