RNA id: XR_005051905.1


Basic Information

Item Value
RNA id XR_005051905.1
length 1994
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110524042
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 46854230 ~ 46861465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTACATTGGGTTTTTCACAGTCCATCATAATAAATACTTTTTGGCAACTTATGTATTGTTGTCTAAGGTTCATTCCGAAACGCATTCTCTCCACCAAAGCCCAAAGCTTACTAGCATTATAAAGATATCCATCAAGTTTAAGAGGTGTCACCACATTTTTGTAGAGATGTATATGGGGGGCAGTGCAAAGACTCATATTGCAGTGTAAGATCAGTCATGCATCGTACCCAGTTTCTCTCTAGAAACATGATGAGAAGCTATGACTTAGCAGAGCAGTATGGCTGCATCAATTGTTCTAGAACTGGTTCAAGAAAGAAGGTTAGGTTAGTTAGGCTACATGTGATCGTGCGTCACCATAACTGAAACATGGCCTTCTTTCTTTCACGGTTTCACGTCATGGTGCAAGTATTTGCATAAACTGGGAAACATTTGCATACATTTCAATTTCTCTGGCCGGCAGTGAAGGGGTTAATCAGCTGTGTGCTCTCAGTATACGCTCACTAGCAGAATCTGTCTGCCACAGCTTCTGCGCTTATCTTCTATCACAGCGCTGAAAACCAGAGGTGTttccagaggacaacaacacagagcTGGTTAGAGAAGCTTCAAACCAAaccacgtacgcacacacacacacacagatcttgGAGCAGTTGACCTCCACATTAGCCACTAATATCTGACATCAGTATAGTTTATAAAAGTgtatctgtttgtctctgtctttcagttTCTGTTTAGACTACATCAAAGATAGAGAAGCTGTGCAGCCACACCATGTTCAATCATGTTacctaattagctagctagctagctgacaatCTGTTTGACCTGTAGCATATAAACATTTGTTGACGCAGAAAGAAAGGGGATTTAAAAATGATTGATTGAAATTCCCCCTGCCACATTCTGACTGGGTTAACAACTTAATATTAAGTTAATATGGACCCATTGTCTTAGACTTGAAATCTTGGACCGGGATTCAAACACAGGGACTTGTGACTCGACTCAAACATTGACGACTTTGACTCAATTCAGAGTTAGCCACAGGGTGTTGTGAATTGACTCAGACTTATGCTTTAGTGACTCGACTACAACACTGCTGCCATGACatggctactactactgctacaactaacaCTTCAAGTTTTTATACTACTTCTATATTGCatgatctttaaaaaaaaatccattcatTTCCCTGTAATCTGCTGAGATTGTGATAGTTTTCAGGTTTTGGAGGGAGTTTTCACTGGATTTACTAGAAATGTGAAATTGACCTGGCAAACCTGTCTTTGCCTGAGCATGATCACAACAAAAGTAGCTGTGCAGCACGTTTTttaaggaagaggaggatggttgCAGACGTTCGCATTCATGCAAGAAGGAGAGATGTCAGCGATTCGGGCCAATGACCAAGGGAAAGCTGGGACAAAAGAGAGGTTCACACGAAATGGATGCTGCGGCCACTGATTGCGCATCAGAGAATGACTCTGAGAAAGAGGAGTCATCTGAAGAATCCTATGAAGAAAATTTGACCGGAGAAATGTCAGCGATTCGGGCCAAACAACCAATAACCAAGGGAAGACTGGGACAAAAGAGAGGCTCACACGGTGACAAAGGAACAAAAAGGTATTGGTCAACAATAGAGGTGGATGCAGTTGAAGATTCCTTGATGAACTTTATCCGAATGGGGAAAAATGCCTGGAAAACGCATTCATTGCTGCTTCTCCCCAAGCGCTAGTAAACAGGGACTGGAGAGCAGTACAGTTCTATGTACACAACAGAATAGTTGCAGATCAGAGAAAATAAGTGTATGAGATGCTTCTGGCTCTCTTGGTGTACTTCTGAGGATTTAATGGGACTTACTTGACTTAAGCTCATAGGCAGATGACGAATGTCCTCTATCTCACTGTTCAGGGGAAGTTTTTCCTGGTGGATGGTTCACTTTTGGAGTGACTAAGGTCTCAAGAATACAAAGCCTGCTGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56602 lncRNA upstream 15798 46837786 ~ 46838432 (+) True G50672
TU56590 lncRNA upstream 44791 46807346 ~ 46809439 (+) True G50661
TU56574 lncRNA upstream 75831 46778167 ~ 46778399 (+) True G50645
TU56571 lncRNA upstream 81185 46772740 ~ 46773045 (+) True G50642
TU56562 lncRNA upstream 95112 46758813 ~ 46759118 (+) True G50633
TU56647 lncRNA downstream 11623 46873088 ~ 46886791 (+) True G50701
TU56649 lncRNA downstream 12735 46874200 ~ 46921807 (+) True G50702
TU56610 lncRNA downstream 72024 46933489 ~ 47188884 (+) True G50674
TU56677 lncRNA downstream 115909 46977374 ~ 46982374 (+) True G50728
TU56635 lncRNA downstream 158401 47019866 ~ 47124997 (+) True G50695
XM_021603310.2 mRNA upstream 44214 46798525 ~ 46810016 (+) True LOC110524021
XM_036978781.1 mRNA upstream 47028 46798486 ~ 46807202 (+) False LOC110524021
XM_036978741.1 mRNA upstream 117367 46632436 ~ 46736863 (+) False LOC110524008
XR_002473536.2 mRNA downstream 382392 47243857 ~ 47246448 (+) False LOC110524064
XR_002473535.2 mRNA downstream 383274 47244739 ~ 47246448 (+) True LOC110524064
XR_002473034.2 mRNA downstream 395128 47256593 ~ 47260224 (+) False LOC110520864
XM_021603401.2 mRNA downstream 454833 47316298 ~ 47339999 (+) False lamb4
XM_021603410.2 mRNA downstream 454850 47316315 ~ 47339999 (+) True lamb4
TU55851 other upstream 861339 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 861339 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 1117450 45735053 ~ 45736780 (+) True G49335
TU54914 other upstream 1436050 45414706 ~ 45418180 (+) True G49142
TU54730 other upstream 1707590 45145278 ~ 45146640 (+) False G48976
TU56739 other downstream 365781 47227246 ~ 47258898 (+) True LOC110520864
TU58177 other downstream 1145209 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 1519077 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 2032032 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 3176109 50037574 ~ 50083996 (+) True LOC118964841

Expression Profile