RNA id: XR_005051899.1


Basic Information

Item Value
RNA id XR_005051899.1
length 3931
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110524061
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47142524 ~ 47286344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctctctcataacaggcctttttttttaaaatcctattcacatttaccctccactagaCCCCTGGTTTCACAAGGTGGAATAAAATGTACTGATAATAAGTGATTTCAGGTTTGTACTGCTGTGAAGACGTAGGCCGTTACATCAAGATTGATCTCTTTGCAAAAAGCCTCAAGAAAACTCATAATAAACTTGGGTAACTGATGTTCATATCTTAAAGGACAAATCCCTATAAGCTTTTGTCAGGAATCAGGATTAGATTAATAAAGCCAACGCAACCTCATGTTTTACAAATGGTAGGCTACCTTATGGTAGGACTAGTTATAAAATTACATTATAGGCCGACACTGTACTATAGGCCTATTTCTTTGCCGGATTATGGCCTGGTCATGGATAAAAAGCACCTGTTCAAAATGGGGTAAAGCTGAGGGAACATAAGGCGGTCCCCAGGATTTCAGCTCCCTGTGTTAGCTGTTGTAATCCTCTTTCTGCATTTATTTGTAGATAGACTCACCCCAACAGGGAGTTATGAGTTGGGGGGTATTATCAAAATGTCTTCTTACTGCTTTTGAGGGAGCAGCAGAAAAGTGTATCCAAGTTGGGGTACCCCTTGCTAGAATTgttagttgtagcagcagtagtagccaTGTAATGGCAGCAGTGTTGTAGTCAAGTCACTAAAGCATAAATCCGAGTCAATACACAAGACCCTATGGCTAACTCTGAATTGAGTCAAAGTCGTCAATGTCTGAGTCGTGTCACAAGTCCCTGCGTTTGAATCCCGGTCCAAGATTTCAAGTCTAAGACAATGGGTCCATATTAACTTAATATTAAGTTGTTAACCCAGTCAGATAGTGGCggggggaatttgatcaattatttttTCAATTTATGTGCCAACAAATGTTTATATGCTACAGGCTGACCAGATAACATGATTGAACATGGTGTGAGTGCACAGCTTCTCTATCTTTGATGTAATCTAAACAGAAACTGtaagacacagacaaacacagatacACTTTTATAAACGATACTGATGTCAGATATTAGTGGCTAATGTTCACATTCTGTGGAGGTCAACTGCTCCTAAATCTGTGTGTACGTGGTTTGGTTTGAAGCTTCTCTAACCAgctctgtgttgttgtcctctggaaACACCTCTTTTCAGCGCTGCAGTCGGACATAGACCGTCTGGCCTGAGCAGGAGGAGAGCGGGgcctttggtcctggatgtttgaCCTCTGGAGAGGATTGGCCTGGATCCTTCTAACCAGCTCTGTGTTGTTTGTCCTCTGGAAACACCTCTGGTTGTCAGTGCTGTGATAGAAGATTAGCGCAGCAGCTGTGGCAGACAGATTCTGCTAGTGAGCGTAAACTGAGAGCACACGGCTGATTAACCCCTTCACTGCCGGCCAGAGAAATGTATGCAAATGTTTTCCAGTTTATGCAAATACTTGCACCATGACGTGACCAGAAGGCCATGTTTCAGTTATGGTGACGCACGATCACATGTAGCCTAACTAACCTAACCTTCTTTCTTGAACCAGTTCTAGAACAATTGATACAGTCATACTGCTAAGTCATAGCTTCTCATGCATGTTTCTAGAGAGGAACTGGGTACGATGCATGACTGATCTTACACTGCAAGTTGAGCCTTTGCACTGCCCCCATATAAATCTCTACAAAAATGTGGTAACACCTCTTAAACGTGATGGATATCTTTATAATGCTAGTAAGCTTTGGTGGAGAGAATACGTTTTGGAATTAACCTTAGACAACAATACATAAGTTGCCAAAAATTATTTATTATGATGGACTGTGAAAAACCCAAGGGATCATCATCTATTAATGTACAGTGTGAGAGCAGATATGACATTTTCTGTCATTTAGATAGTTGAGGCTGTGTGTAAGTTCAGATGGTGTTCAAGGTACAATGTGTTCAACCTTTCGTTACAGACCTTTAGTGCCCCCCTGTGGAATATCACGTGTATCACATGGGGATCAACATTTGTTTGTGAGGGTTGAAAAAACAACATCATGCTGAGGAAGCTTTATTCAAATGACAGAGGATGAGACACGAGGTGTCGTACAGTGTCAGGCTTCAGATCAAAAGAAAAACGATACAGTCACTGCCTCGCAGTCCAACCAACGGTATTTTAAACTAAGCACAGTTTGAAGGCTAAGCAAAAGTCATTCATATTTCACAAATGTAAGGCAACACTACACATATTCCAGATAAAGGGGTCATTTTTATTTGTATAAATGGAAGATTTATATAAGCATTGTGTTATGTGGCACTATCCAGGTCTTTCTTGCAAAAGTGGGTTATTTTGGCAAGAGAGACCTGGTTACCGTGTAACCCAGCAGTTATATTAAATCTGCAGCTGTCTGCTTCCCTTACATGTGCAATTTGAGACAGGGCTTCTTGACTCAAGCGAAGAAACCTTTGGTCAAATATTATGAAAAACAAGCCTATTGGTCAGAAAATGTTGTTCAGCATTCTCGCATTTAATAAACACTGTGTTTGGATAGATCCTCATTTCCAATGCTGTAGTACAAATAGTTTCACCTTAGAATTTGTCAGTATTGCTATACATTGATAACATGAAGAATTATGACACTAAGATGTGCCACCTTCGGAATAATACAAATTTGAATTGGAACTTCACTTATATTAGTCCGGTCAGCACTTACCTCTTCTCTTTGGTCAACAAATCAACCAATCCAATGAAGAAATAAACATTCTACTAAAAGGGTATACTTCATAGCTCACAAGAAaccaacaacacacaccacagatcATTTTCAACTGCAATAAAACTGTATAGAAACAATTCTTTGGAACACGGtgatgataaattaacattttCCTGACTAGAATAACAAGTGAATTAATATTAATCTCTAGTTGATACTGAGGGACATATTCTATCATCACACCAGTGTACTCGATACTCTGGATACTCCTAAGGGGTTGAAGCAGTCCATCTTCAGGAAGAGAACACTATTCGAGAAGCTCCACACCCCAGGGATGAAAGTACTTTGACAGCTTGTGGCTCCTGTTGGGTCTCATAGGAAACGTCTGTTCCAACAGTACTTCCGACagtagctgctgctgctcatgCAGAACAGGCTGGATCGGTGGGCACTGGATCATTTCTGTCACCTGCCCTTTGTGGTTTGGGGTTGAAAGGGCAGTGGAGGAACTAGGATGGCAGGCATGGCAGACGCTGGGATGATGCTGGCTGATCCTCTCTGGTTCATGGGAGGCCATGAGGTCTCAATAGGGCTCCTGATTGGCGCAGCGAAAGAGCCTCTTCTTCCACCTCCAAGATCGAGGGCAgtgatggagagacacacactgggaAGAAAGGCCCAGACTTAAAGTTAACGTCCCAGTGAATGGGCTTCACTCTCTTCCTGCGCCCTCGTTGGCTATTCTCCCATTCCCGCTCGGCCTTAGCACGGGAGGCGGGCATGTGCCCCCACTTGATAGGCTGTTCTGCCAGTGGGACCAAGGGGGTCAAGAGGATTTCAACGGGGCACTTCTCACCCGCCTGCCGAATGGGACCAAAATATTGTGGGATTAGCGTTGACTCAAAACGAATGCAcgacaagaaaacacacacaactactactattatagTATAGAAGTCAAAATACCTGTAGCTATGTTCCTACTTGGACATAATCAAAAACATTGACACCACAGTGATTCTCCTTCTAAGAGGATGCTATAATAAATAGATCATTGCGATTTTCAGATTTATTTGAGTACTGGGAATTTTTTTGTCGTGCATATATGCTGATAAATTGAATATGAAACTAAAATCATGAATTTTTTTCAAAGGCGTCTGTGTGGCGTCAGGttttcaggttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57237 lncRNA downstream 2507 47207383 ~ 47236625 (-) True G51214
TU57277 lncRNA downstream 19613 47189796 ~ 47219519 (-) True G51246
TU57266 lncRNA downstream 75540 47129239 ~ 47163592 (-) True G51236
TU57258 lncRNA downstream 101049 47109135 ~ 47138083 (-) True G51229
TU57141 lncRNA downstream 115798 47074548 ~ 47123334 (-) True G51137
TU57295 lncRNA upstream 9828 47253034 ~ 47254755 (-) True G51261
TU57317 lncRNA upstream 32191 47275397 ~ 47276348 (-) True G51277
TU57732 lncRNA upstream 140452 47383658 ~ 47384488 (-) True G51652
TU57893 lncRNA upstream 445914 47689120 ~ 47690770 (-) True G51802
TU57993 lncRNA upstream 563348 47806554 ~ 47806900 (-) True G51899
XR_005051924.1 mRNA downstream 7546 47230903 ~ 47231586 (-) True LOC118964701
XR_005051912.1 mRNA downstream 31211 47206503 ~ 47207921 (-) True LOC118964696
XR_005051910.1 mRNA downstream 66442 47171414 ~ 47172690 (-) True LOC118964695
XR_005051921.1 mRNA downstream 93636 47144422 ~ 47145496 (-) True LOC118964699
XR_005051907.1 mRNA downstream 119468 47117854 ~ 47119664 (-) True LOC118964692
XM_036978986.1 mRNA upstream 298018 47541224 ~ 47549582 (-) False LOC110524104
XM_036978980.1 mRNA upstream 298018 47541224 ~ 47561223 (-) False LOC110524104
XR_005051934.1 mRNA upstream 353498 47596704 ~ 47604280 (-) True LOC118964710
XM_036979041.1 mRNA upstream 390674 47633880 ~ 47676258 (-) False LOC110524125
XM_036979038.1 mRNA upstream 390674 47633880 ~ 47682981 (-) False LOC110524125
TU57229 other downstream 120099 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1289181 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1518008 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 4110103 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 8217107 39021805 ~ 39022025 (-) True G41868
TU57327 other upstream 45733 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 134435 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 299170 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 1050902 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1740979 48984185 ~ 48985917 (-) True LOC110532382

Expression Profile