RNA id: TU57249


Basic Information

Item Value
RNA id TU57249
length 1364
lncRNA type read_through
GC content 0.42
exon number 2
gene id LOC110524061
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47142524 ~ 47286344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCAGTGTTGTAGTCAAGTCACTAAAGCATAAATCCGAGTCAATACACAAGACCCTATGGCTAACTCTGAATTGAGTCAAAGTCGTCAATGTCTGAGTCGTGTCACAAGTCCCTGCGTTTGAATCCCGGTCCAAGATTTCAAGTCTAAGACAATGGGTCCATATTAACTTAATATTAAGTTGTTAACCCAGTCAGATAGTGGCggggggaatttgatcaattatttttTCAATTTATGTGCCAACAAATGTTTATATGCTACAGGCTGACCAGATAACATGATTGAACATGGTGTGAGTGCACAGCTTCTCTATCTTTGATGTAATCTAAACAGAAACTGtaagacacagacaaacacagatacACTTTTATAAACGATACTGATGTCAGATATTAGTGGCTAATGTTCACATTCTGTGGAGGTCAACTGCTCCTAAATCTGTGTGTACGTGGTTTGGTTTGAAGCTTCTCTAACCAgctctgtgttgttgtcctctggaaACACCTCTTTTCAGCGCTGCAGTCGGACATAGACCGTCTGGCCTGAGCAGGAGGAGAGCGGGgcctttggtcctggatgtttgaCCTCTGGAGAGGATTGGCCTGGATCCTTCTAACCAGCTCTGTGTTGTTTGTCCTCTGGAAACACCTCTGGTTGTCAGTGCTGTGATAGAAGATTAGCGCAGCAGCTGTGGCAGACAGATTCTGCTAGTGAGCGTAAACTGAGAGCACACGGCTGATTAACCCCTTCACTGCCGGCCAGAGAAATGTATGCAAATGTTTTCCAGTTTATGCAAATACTTGCACCATGACGTGACCAGAAGGCCATGTTTCAGTTATGGTGACGCACGATCACATGTAGCCTAACTAACCTAACCTTCTTTCTTGAACCAGTTCTAGAACAATTGATACAGTCATACTGCTAAGTCATAGCTTCTCATGCATGTTTCTAGAGAGGAACTGGGTACGATGCATGACTGATCTTACACTGCAAGTTGAGCCTTTGCACTGCCCCCATATAAATCTCTACAAAAATGTGGTAACACCTCTTAAACGTGATGGATATCTTTATAATGCTAGTAAGCTTTGGTGGAGAGAATACGTTTTGGAATTAACCTTAGACAACAATACATAAGTTGCCAAAAATTATTTATTATGATGGACTGTGAAAAACCCAAGGGATCATCATCTATTAATGTACAGTGTGAGAGCAGATATGACATTTTCTGTCATTTAGATAGTTGAGGCTGTGTGTAAGTTCAGATGGTGTTCAAGGTACAATGTTCAACCTCCTTTCGTTACAGACCTTTAGTGCCCCCCTGTGGAATATCACGTGTATCACATGGGGATCAACATTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57258 lncRNA downstream 4441 47109135 ~ 47138083 (-) True G51229
TU57141 lncRNA downstream 19190 47074548 ~ 47123334 (-) True G51137
TU57223 lncRNA downstream 46238 47046203 ~ 47096286 (-) True G51209
TU57206 lncRNA downstream 75138 47015304 ~ 47067386 (-) True G51193
TU57197 lncRNA downstream 97172 46990948 ~ 47045352 (-) True G51184
TU57295 lncRNA upstream 10481 47253034 ~ 47254755 (-) True G51261
TU57317 lncRNA upstream 32844 47275397 ~ 47276348 (-) True G51277
TU57732 lncRNA upstream 141105 47383658 ~ 47384488 (-) True G51652
TU57893 lncRNA upstream 446567 47689120 ~ 47690770 (-) True G51802
TU57993 lncRNA upstream 564001 47806554 ~ 47806900 (-) True G51899
XR_005051907.1 mRNA downstream 22860 47117854 ~ 47119664 (-) True LOC118964692
XR_005051906.1 mRNA downstream 48623 47091238 ~ 47093901 (-) True LOC118964691
XR_005051908.1 mRNA downstream 103944 47037419 ~ 47038580 (-) True LOC118964693
XR_005051909.1 mRNA downstream 167835 46972769 ~ 46974689 (-) True LOC118964694
XR_005051913.1 mRNA downstream 194998 46946048 ~ 46947526 (-) True LOC118964697
XM_036978986.1 mRNA upstream 298671 47541224 ~ 47549582 (-) False LOC110524104
XM_036978980.1 mRNA upstream 298671 47541224 ~ 47561223 (-) False LOC110524104
XR_005051934.1 mRNA upstream 354151 47596704 ~ 47604280 (-) True LOC118964710
XM_036979041.1 mRNA upstream 391327 47633880 ~ 47676258 (-) False LOC110524125
XM_036979038.1 mRNA upstream 391327 47633880 ~ 47682981 (-) False LOC110524125
TU57229 other downstream 23491 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1192573 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1421400 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 4013495 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 8120499 39021805 ~ 39022025 (-) True G41868
TU57327 other upstream 46386 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 135088 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 299823 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 1051555 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1741632 48984185 ~ 48985917 (-) True LOC110532382

Expression Profile