RNA id: XM_036978980.1


Basic Information

Item Value
RNA id XM_036978980.1
length 3069
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC110524104
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47541224 ~ 47561223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagtggaacaGCATCAGAGCTGGAgctacccatctctccctccctctcctgtttctctctctttccctctgcctctctcacaaCGAAAGGAGAAGAAGACTATTGGACTTGGAAATACACATGAAAAACCGTCTGTGATCTGAGTCTCACGGTGTCACGCTGGACTGCTGCTCTAAAACATGGGTCCCAGCCATGAGGTGAATACCTGCTGCTGCTCAATACAGTATGTGAGGGGGCTCACTCCCGCGGATGGAAATTGACACGATGAGCGACAGTGATTGAGGATAACAATGATGGAAGACAGAGTGATCCAGCCCAAGCCAGAGCATTCCTCCTCAACCCTTCCTTCGCTTCACCGTCCGGCCATCTGAAGGATACATTGACCTTCACACATCCAGCTTGCCTGACAAACTAGAGCAGGGTACATTGAAAGgttgcttctctcctctctgccaagGACGAAACGACTACAACAGGGCCAAAGCTTTGGGGACCAGGTGACAGCAGAAATCTGCTCTGTCTGGCCACGGTAACAAATGAGCCTTTATTTGTGAAGTTAACAGTGCTAACATCAGACTCCATAAGGACCAATTACTATCTGAAGGGAATAGTGGGCCAAGATGAAGGAGACTGTGTTTGTGGCTTGTTTGTTAGCGGAGCTAGCTCTGACTGCCTTTGTTCTGGCCTCAGAGGGGGGCACTGCTCATTGCCCTGCATTGTGCCGGTGTGAGATACGACCCTGGTTCTCTCCCAGCTCTATTTATACAGAGGCTCCCACGGTGGACTGTAATGATTTAGGCCTATTGACCATGCCAGAGAAACTGCCCTCAGACACACAGGTGCTATTGTTACAGACCAACAATATCATCAGCATCGAGAAATCTTTGGATTACCTGGCTAATGTCACAGATATAGACTTATCCCAGAATAACATATCCTCTGTGAGCGATGTCCGTCTGGGTCCTCTTCCCCATCTGCTGTCACTGCACATGGAAGAGAACTGGGTTCCGGCCTTATCAGATAGCTGTCTCCCGTCCCTGCCCAACCTCCAGGAGTTCTACATCAACCACAACCTGATCTCCTCCATCAGTCCTGGGGCCTTCCAGGGGCTGGGGAGGCTCCTGCGGCTCCATCTCAACTCCAACCGTCTAAGGGGTATCAGCAGGGAGTGGTTCCAGCCGCTACCCCGCCTGGAGATCCTGATGATTGGGGAGAACCCCATCGTCCAATTGTCAGACATGAACTTTAAGCCCCTGGTCAACCTACGCAGCTTGGTTCTGGCCAGGATGAATATGTCCGAAATCCCAGATGACACTCTGGTCGGCCTCGACAATCTGGAGAGCATCTCGTTTTTCGACAACCTGTTTGTCAGAGTTCCCCGGGCTGCTCTGAAGAAAGCCAAGAGCCTGAAGTTTCTGGATCTCAACAAAAACCCCATTGAGCGGATTCAGAGAGGGGATTTTGTGGACATGTTCCATCTCAAAGAGCTGGGCATCAACAGCATGCCTGCACTGGTGTCCATTGACAGTTTCGCCCTGAACAACCTCCCAGAGCTGACCAAGATAGAGGCCACCAACAACCCAAAGCTGTCCTACATCCATCCCAATGCCTTTCACAAGCTGCCGAGACTTGAGACGCTGATGCTGAACAGCAACGCCCTCAGCGCTCTGCACCGCGGCACTGTGGACTCCCTGCCCAACCTGCGCGAGGTCAGCATGCACAGCAACCCCATCCGCTGTGACTGCGTCATCCGCTGGATCAACATGAATCGGACCGGAGTACGCTTCATGGAGCCCAATTCCCTGCTCTGTGTGGAGCCGCCTGAGTACCAGGGCCAGCACGTCCGTCAGGTTCACTTCCGGGAGATGACCGAGATCTGCCTCCCACTCATCTCGCCTGGGAGCCTTCCAGATCGAGTCACGGTCGGGAGAGGGAGCTTGGTGACGCTGCACTGCCGGGCATTTGGAGAGCCGGAGCCAGAGATCTACTGGGTCACCCCCTCTGGGGACAGAGTCCTGCCCAACAGTGTGTCTGATAAGCACTACATGCATCCAGAGGGGACCTTTGAAATCTATGACATTACAAAGCGTGAGGCAGGACTGTACACCTGTGTCGCTCACAATCTTGTTGGCGCAGACCTTAagtctgtgttggtggtggttgaCAGATACTTTCCACATCCTTCTGTTAACGCTTTACATATATACGTTAGATCAGTGCAGCCCAACTCTGTTTCAGTGTCTTGGGATAATACTCACGGTGGTCTTGTATCCAATATAAAGTGGTTCACAGTGGCAAATGCTAAGCACCCCTCCATGGCACACACTGCGAGAGTACCATCCGATGTGAAGGAGTACCGTCTCACCCACCTGAACCCCTTCACCCAGTACCGTGTTTGTGTGGAAGTCATGAGCATGCAACTCGGACACAACAGGGACTGTGTCAATGTCACCACAAAGGGACTGGCTCACCCCGTGGAGAGCAGGGAAACGTGGAACACAGTGGTGATGGCTGCCTGTGCTGTGCTATTCATTGTGGTCGCTGTGGCTTGCTCTCTCATATACACATCTCTGCAAAGCCAACACTTTTACAGGAAGTTGATGGTGGACCAATCTCAGTCATTGCTCAGTCCTAGCACCCGCCCCGGCTCCGCCTCTTCTCTCACAGAACTCTGTGTGGCTGGAGTCAAGGTGAGGGCGACAGTGATAGACTTGCCAGAAAACTCCATGTAATGTAAGAAACGTCCTTGAGAAGGAAAATTAATGTTCTGGATTTTAAACAAGGTGAAATAGTGATGGACACAGAACTATGTTGATTCGTGCCCCCTCATTTCGTGACAATGACAGGACACCGCGTTCTGAAACTCCTGGAACACGATGGAATCAGAAGCCGGAGCCCTCACGCTTAAATATTTAACCAGCTAAACTCTGACCCATAGACTATTTTATACAACAAATTTGTGTCGTTGCGGAAAAAACTTTCACAGACCGGTATCTAGATTGTGATATACGTGGCTACTGGTCTGTCATTCATGAAGTGCAACTGGAATAAAGCAGAGCACAAAGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57732 lncRNA downstream 156736 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 254880 47239133 ~ 47286344 (-) True LOC110524061
TU57317 lncRNA downstream 264876 47275397 ~ 47276348 (-) True G51277
TU57295 lncRNA downstream 286469 47253034 ~ 47254755 (-) True G51261
TU57247 lncRNA downstream 298671 47239133 ~ 47242553 (-) False LOC110524061
TU57893 lncRNA upstream 127897 47689120 ~ 47690770 (-) True G51802
TU57993 lncRNA upstream 245331 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 265745 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 330255 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 340006 47901229 ~ 47901581 (-) True G51993
XR_005051899.1 mRNA downstream 298018 47239132 ~ 47243206 (-) False LOC110524061
XR_005051924.1 mRNA downstream 309638 47230903 ~ 47231586 (-) True LOC118964701
XR_005051912.1 mRNA downstream 333303 47206503 ~ 47207921 (-) True LOC118964696
XR_005051910.1 mRNA downstream 368534 47171414 ~ 47172690 (-) True LOC118964695
XR_005051921.1 mRNA downstream 395728 47144422 ~ 47145496 (-) True LOC118964699
XR_005051934.1 mRNA upstream 35481 47596704 ~ 47604280 (-) True LOC118964710
XM_036979041.1 mRNA upstream 72657 47633880 ~ 47676258 (-) False LOC110524125
XM_036979038.1 mRNA upstream 72657 47633880 ~ 47682981 (-) False LOC110524125
XM_021603483.2 mRNA upstream 72657 47633880 ~ 47689066 (-) False LOC110524125
XM_021603497.2 mRNA upstream 72657 47633880 ~ 47689066 (-) False LOC110524125
TU57725 other downstream 162681 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 251543 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 422191 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1591273 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1820100 45720805 ~ 45721124 (-) True G49774
TU59011 other upstream 732885 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1422962 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2850411 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 3204140 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 3216524 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile