RNA id: XM_021603497.2


Basic Information

Item Value
RNA id XM_021603497.2
length 6630
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110524125
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47633880 ~ 47689066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatatatatatatagtgtatcattATTTAGTTTGTAAGTACAACattaagttctctctctctctccaacagctGCCATAACCATTAAGCCCCAGTCAGTGAGGGCTATGGGCTGCAGGAATACCACAAGAACTCCCAGGCAGAACTACAAGCCAGAAAGGAAGCTTTCCAAACCAACCTTAATCACCTGGACCACCCTGTCCTAGACAGTGATGTCACCACAATGTGTGTGAAATTTGAAAGGGGGGAGTACCCTGGCGAGTTTAGCCCTAAGATGTTCCCGGTAGAGTGGAGCCGCAAGAAGAAACTGGCGCAACCACGATATGAGATGCGCTCTCAAGACCGGGCGTTCCAATCCATAGTTAGTGACAAAGAAAAAGTACAGATCCACTCTGCGGGAGAAGTCAAAGAAAAATGCAGAACAGGCTGCTGCTATAGTATGTCTACGTGTTCTGGGACTGCCAGAGGGGCGGGCGGGTGAACAGTACTCTGGGTTGGTGggcaagagaaagagggaggagaagaggaataaGAAGCCAGATGATGAGGACACCACTGTAGAGTATGGAGCCAGGAAAAGACCCCTGTCTAAAAATCCAAAGGAGCAACAGCTGCAGAAGACAACAGGGCACCAGCTATTCCAACTGGTGTACAGCACCAGACAAGCACAGAGTGATGCTGCACTGTGTAAAATGACTAATGCTTTACGACCGCAATAAGACGGTATGCTCCTTTTTATATTAAATGGTGGCGGATTTGCAGCAGGGGTCAGCTCTTGCCAGGGGGAGTGATCGATACAGTAGCGGCCATATTGTTGTGAGTTTGAGTCATTGCCTACAAGAGCAGCGTACAGCGAGTAACTGAGACACTGAGTAACTGGAACTGTCAGCTCTCACCCCAATAGTCAAACATCAATTAGCATGAGGCGTTCCATgctatttattttctctcctgGATTATTTTGTTTATAGACAACTATCATGTTTGGTGTTTGTGTGAAGAAGGCATGCTCTACAGGGGATTAAGAAATGGCCCtattcttaattttttttatttgataacCAAAACcgataataaaaaatgtaaactgGTCAAATACGTAACAAGACAGACAGTATGGCAGTCTACTTGAAATCACACATTCTCCTTATGCTTGCAATACTGAATGTATTCTGCTGTAATGTCACGATAGAAAACCAACTTTCAGCACCACATCATATTGACCAGAAGCAAGGTAATTATTGGTTTTGTTTTATTGTTATTGACAGGagtgtatgtactgtgtaataaaaGGTGCCAGAGGAGGGCAGTACAGGAGCTGTATAAAGCTAGTTAGAATTATCAGACAGTATTTATTTTGTAAGGCCCTTTCACAATTGGTGAAAACGTACTTTTTTTGTTGCAGTTTTCATCCTTATAAAGGGATTGTTGCTCTATCACTGTTAAACTATAAAGGTTGATGATTTGATTGTGgtatgagtggtgtgtgtgtctgctgttgGATCACGGATGGTTTCTTTGTTTTTAAAACTGTTTGCTTCTAACGAGATAAGTATTCGTATCGTTGATTGATTGCAGTCTCCAGAAATACATTCATTGTCTTGTCAGGTGATTTGATACTCTAAAATGGTCTAGTAGcttgtaggcctacagtactcTCTCACCAGCTACTTAGTGTACGCGGGGTGATGCCGGGTGTAGTATTTTGCTGACGTCATGAACCAAGCTGTCTGTAATGCTTTGTTTGTAATGTGGAAGTTTGGAGTAGACTACCAGCCTACTTCACCAGGCATCAAGAGTAACTACGGTCGAACCATTGTGTGCGTCTTTTCTAGTCCGAGAACTGAACTGGTGAAGTATCAAGAGAATATAATAGATTCGTAATAAATGTCGCCTGGAGGGGACACGCATTTAGGAATCGCTTTAGTTATTTACAACTTCGGATAGGCTTCTTGCTGCCGTTTATAGTGTAAACTAAACAAATTTTCCTCCTGTTGTATCGTTAACCTTCCGAATCCAGTTTTGAAACAACCCAGGAATAAAGAACTGTAAAGAACCGACTCGTAAGACCGAATGACTACTGTAAATTGTAGCGGCAATGAGGAACTGGACTTCAGACTTATTTTCGGAGAGGACGCGCAACAGCTAGGCCCCGCAGGTCCAGACCCTGGTGACAGCACGCCATACTATACCACCCAGTCTATGGTCAATCAGCCTATTGGCCAGGCCCAAGACTTACAACAGAGCCAGCAGCACCACCAGGCTGCTTCTCAACAAGCTCCTCTCCAAACCTATGGTAACTACCACCCCAGCTCCAGCTATGAAGTTCACAGTTCCAGATACTGTCCCATGGGACACCTCCCCAAGGCGTTCGACTGCCCAAGCATCCAGATCACATCTATCAGTCACAGTCACCAAGAGCTGGGCTCCAGCCAGGATGCCGTGCCCATCAGCGGGGCAGACGGCGGGGGTGAGTGCGGTCGTGAACGGTCCTGGTCCAGGGATCACCTCTACCTACCCCTGGACCCCTGTTACAGGGACTCATCGTCCCTGAACCCCAGCCCTTGCAGCAGCCTGTCCTCCAGGAGCTGGCTGTCTGACGTGTCCTCCTGCGAGTCCTTCTCGCACGTTTACGACGACGTGGAGGCTGAGCTGAACGAGGCGGCCGCCCGATTCACCATGGGTTCCCCGCTGGCCTCTCCCCTGGCCTCCCCTGGCTGCTCCCCACAAGGCCAGGCCGCGGGGGGATTCGGGGTAGAGCTGTGGCAGCAGCAGTACTTCATGAACACCCACTCCCTCTCGCCCCACCAGTCCCCTCGCCAGTCGCCCCGTCAGTCCCCCTGTCACTCTCCGCGCAACAGCGTCACAGACGAGAACTGGCTTAACCCGCGCCCCACCTCCAGGTCCGGCTCAAGGCCCACATCACCTTGTGGGAAGAGACGACACTCCAGCGCAGACGTCTACGGACATGGACCttccccctccccatcccctcaTCAGTCCCCCTGCCCCACCCCCAGCCACTCTCCCAGAGGCAGCGTAACAGAGGACACCTGGGCGGTTGGAAGCCCTGGTGCCATGGGGGCCCTCCTGTACAACCTCCCTGAGGTAGACGTTCCCTCCAAAACCAGGAGGACCTCTCAGCAGGCTCACATGGGTCTACTGCTTGGACAGGGAGACTCAGGGCTGGTGCCCGAAGACCAAGGAGTCGTGTTgcctcacctggactcacctgcAGATGAGTCTGGGTCTACTCTAAAACAGGATGGCCTTTTTGAAGAACTCTTTCTCTCGGTTCCCTCACACTTCACCTGGAACAAACCCAAACCTGGCAACACACCCCTTTTCAGGACCTCCTCCCTACCCCCACTGGACTGGCCCCTGCCCAGCCAGTTTGGCCAGTGTGAGTTGAAGGTGGATGTGCAGCCACGGGGCCACCACAGGGCCCACTACGAGACAGAGGGGAGTCGGGGGGCCGTCAAGGCTGCCTCAGGAGGACACCCTGTAGTCAAGCTCATTGGATACAACGAGAAGCCAGTCAACCTGCAGATTTTCATTGGAACGGCAGACGATCGGTACTTGAGACCACATGTCTTCTACCAGGTGCACAGAGTAACGGGAAAGACGGTGGCTACTGCTTGCCAGGAAAGCGTAATAAGCAGTACAAAGGTTCTGGAAATCTCTCTCCTCCCCGAAAACAATATGTCCACCAGTATTGACTGTGCAGGCATCCTGAAGCTGAGGAACTCTGACATTGAGCTCAGGAAGGGGGAGACTGACATCGGGAGGAAGAACACGCGTGTGCGAGTGGCATTCCGTGTTTATATCCCTCAGCCCAGCGGCAAGGTCCTGTGTCTGCAAGCTGCCTCTATTCCTGTGGAGTGCTCCCAGCGCTCGGCCACAGACCTTCCCCAGATGCAGAGCTGCAGTCCCCTCAGCTGCTTGGTCAGTGGGGGTGGGGAGATGGTAATTACTGGCTCCAACATATCCCCCGAGTCAAAGGTCATCTTCCTGGAGAAAGGCCCTGATGGACGCACACAGTGGGAAGTTGACGGAAAAGTTATTCGAGACAAGAGTAAAAGATCCAGAATCGTGGTTGAGATTCCTACCTACCACAACACCACTGTGAGCTCTGCAGTCCAGGTGCAGTTCTACGTGTGCAacgggaagaggagaagaagccAAAGGCAAAATTTCACATACTTGGCTGGTGCTTCTCCACACCATTATCCCACTGCCAGTGACCATGCAGTTGTGGCTCCTCGGGTGAAGCAGGAGCTCACCGACTCAACCTATCTGTCTACTTGCAACAATCTCCCTGGCCTATATCCAACAAGCAGCAAGCAGAATTCTTCTGACGGGGCCTTCTCTCAGGACAGGCCCTTGTATGGTTCCTCTGGTGGTCACCCTGTGCCTTGTGGTCCGCCCTCCCAGCCAGCATACACTCCCTCAGGCTCCTCACCTCTTCAGCACTCCCCTCACCTCCACAGCTACAGTCCCAGTATGGGATACCAGCGGATAAGCCCCATGCATACACCTGATTCAATGCCACCCCCTCGGACAAAGCCTGTCTACCAGGCCACACAACATAATGTGCCTTATAGTGGCCAGGCCAGCTCTCCCATGAGACCTGGTCTTGCCGCATTCCAGGTCATTCGACCTCAGTCTGCCCAGCCCAGGCCAGCTGTCTCCAGCCCTCATAGGGAAAGTGTGATGTACCAGAGCCTCATTGGACCTGATCTCTCTGTTGCCACTCTCCAGTCTGCCAGAACCCACACCCAGAATGCAACCCAGCTGCAGTCTCTAAAATACCACTTTTCCCACTCAGACTCTGACCTAGCGGCTCTACAGGCTGAGTATAATCTGAGCTACCATTCTGACAAAAACTTGCCTGCTTCGTATTCTCCCACTCCTGGAGTAGCAGCAACCTGCTCCACCTCCCCGTTAGCATCAGCCTCCTCTGGGGGTCCCCTGAGGCACCTGTCCCCCAGCAGCGCCCAGGGGCTGGCCTCTGGTATCGACCCCCAGGAGTGTCCCCCGGCACCCCATTCCCTCTTCTCAAACGACAGAGGGAGGGTGAACATCAAGCAGGAACCAGAGGAGAAGCTGCCTCTTGGCTCCATGGGACTCCAGGAGATCACACTAGATGATGTGAATGAGATCATCGATAGAGACATATCTCAGCTCGGTGGCGGAGCGGCAGAGTCCAATCAACCAAAACAGGATACTTATGGATGGGATACTGTGATACTCCAGTGATAATGTTCTTCCATTCTGTGGCCTTCATTCGGTTTCTATTAATCATCATCATTACTCAGGACAGGAGTTGAATTGTGCTATCTATGCATTTGGCGGTTCTATTACTAACTGACCATAAATAGACGGCAAAACCCATTGTGGTTTAACTGGTACAATTAACCCAGTTGCTGGTAATACATACACCTGTGGAGGTGGTTAGGCTGTAGAGAATGTAACCACTGGGCACAGGTGTCAATTCaacgttggttcaatgtaattccattgaaatgacgtggaaacaacattgactCAACCAGTGTGCCCGGTGGGTAGGCCTGTTTGTTTGCTTATCTAACAGTTCAGGATTTTCAAGTcaaactaaaatatattttaagatGGAAATACTTCTCACACCAAAGATTTTTTATTTGTTGCCCTTTAGGCACAGCTGAAATATGACAACTAATTGTCTGTAAATGCATGAAAATTACGTATTTGGTGTTGAAAGAACATTGATGTCAATGAAGAGGCTGAAAAAGGCCAAATACCAAATGCTGTGTTAATTTAATATTTATTGGTGAAATACATTCGATTTAAATTAATTTTTGATACTGTAGCTCTTGCAGTTGTATGATTCTTTAGAATAATGATACATTTTCATAACCTTCTAATGCCTGGTATTTGTATGCCTATTTTCTATTTTAGTTTCCAaagaatgtacagtatattatcaagATTTATATGATACTTTTGGCAGTATGCTTAGGTGTGAAGTAGCTATATCAAAGTCAAAGTTAtaatcaacaaaaatataaacgcaacatgcaacaatttcattgatttgaccgagttacagttcatatgaggataTCAGTCAatagaaatacattcattaggccctaatctatggattacacatgactgagaatatagatatgcatctgttggtcatagaCACCTTAAAAAAATGGGCCTCGGGATGTGGTCTCGGTATTttggtgcattcaaattgccatcgataaaatacaattgtttgTTATCCGTAGtttatacctgcccataccataaccccaccaccaccatggggcactttgttcaTAATGTtggcatcagcaaaccgcttgcccgcATGACTCCATACAcatacgtggtctgcggttgtgaggccggttggacatactgccaaattgtcTAAAAGGACATTGGTGGCTTATCTTGGCAAAGGTGAGATGTTCACTAACAGAAATAGGATttttgtgtatggaacatttctgggatcttttatttcatctcatgaaacatgggggaccaacactttacatgttgtgtttatatttttgttcagtgcattTCATCAGGTTtttgttcaataaaaaaaaaagcaattAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57732 lncRNA downstream 249392 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 347536 47239133 ~ 47286344 (-) True LOC110524061
TU57317 lncRNA downstream 357532 47275397 ~ 47276348 (-) True G51277
TU57295 lncRNA downstream 379125 47253034 ~ 47254755 (-) True G51261
TU57247 lncRNA downstream 391327 47239133 ~ 47242553 (-) False LOC110524061
TU57893 lncRNA upstream 54 47689120 ~ 47690770 (-) True G51802
TU57993 lncRNA upstream 117488 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 137902 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 202412 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 212163 47901229 ~ 47901581 (-) True G51993
XR_005051934.1 mRNA downstream 29600 47596704 ~ 47604280 (-) True LOC118964710
XM_036978980.1 mRNA downstream 72657 47541224 ~ 47561223 (-) False LOC110524104
XM_036978986.1 mRNA downstream 84298 47541224 ~ 47549582 (-) False LOC110524104
XR_005051899.1 mRNA downstream 390674 47239132 ~ 47243206 (-) False LOC110524061
XR_005051924.1 mRNA downstream 402294 47230903 ~ 47231586 (-) True LOC118964701
XM_021603540.2 mRNA upstream 6116 47695182 ~ 47716505 (-) False LOC110524148
XM_021603531.2 mRNA upstream 6116 47695182 ~ 47722400 (-) True LOC110524148
LOC110532355 mRNA upstream 36547 47725613 ~ 47733539 (-) True LOC110532355
XM_021603570.2 mRNA upstream 96572 47785638 ~ 47788293 (-) True LOC110524174
XM_021603649.2 mRNA upstream 354426 48043492 ~ 48049196 (-) True LOC110524205
TU57798 other downstream 72671 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 255337 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 344199 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 514847 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1683929 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 605042 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1295119 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2722568 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 3076297 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 3088681 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile