RNA id: XM_021603540.2


Basic Information

Item Value
RNA id XM_021603540.2
length 2541
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110524148
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47695182 ~ 47722400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaggaaggaattaATTTTAAATGGACCGCCCTTGCCCGGAAATTCGTGTTTTCAGCCACtggtagcttgtgggtgctttatatgcgctacagtcaattatgattgcatgtctacttatattaactatatattTATTAATATATGCCTACTCTGTGATAGCTAGCAAATGAATTAGCtgactaacgttagcctgcctagctggaacttctgaagaaggaaaTTTTTTTATTTCTACgatttccaaaagctaaccaaacaaaaacataattacttTTACGAGAGGTgtttgtgcattagtagcacaatttctaacttatttacatttgtttttacttaTATGTTTACTCCATATTGACGTTGAGGTTTTAAGTGTTGGCGGATGTTTCTTAGCGGATGTGCAATTGTCGCGGATTGAATTATGGGGCGTTTCAGGTCCcgaagtgaacataattgtacactcgcaaacgAGGGATGAGGGGTTtacgttgcaaacttcccttgcttggctaatcactTGGACCGACGACAAATATGGCCGCAGGCATTCCCCCAAGGCCATAAGGCAAGGATAAGTGGACGAGGcaccatgagctgtccatttccaACTGATTGTGCTGCGGCCgctgcttcaagtttcagcaccacaatGGAACATAATTGGTTCTGGAATCTTCATCTCTCCTAAGGGGGTTCTAGAGCACTCGGGTTCAGTGGGTCTAGCACTGATTGTGTGGGTACTAGGGGGCTGCATAGCTGCCCTGGGTTCCCTCTGCTATGCTGAGCTGGGGGTCACCATCCCCAAGTCAGGAGGGGACTACTCCTACGTCACAGAAATTTTCGGAGGCCTTGTTGGGTTTCTCCTCCTGTGGAGTGCGGTGCTCATCATGTACCCCACAACCCTGGCTGTCATCGCCCTCACCTTCTCTAACTATGTCCTTCAGCCTGTATTCCCCGACTGTGTCCCTCCCTACATGGCCACACGCCTGCTGTCAACAGTCTGTCTCTTGTTCCTGACCTGGGTGAACTGCTCTAGTGTGCGTCTGGCCACCAGGATCCAAGATGTGTTCACGGTGGGGAAGCTGGCGGCCCTGGGTCTCATCATAGTGGTCGGCCTGGTGCAGATCTGCAAGGGCAACTACGAGGGACTGACGCCTCATGTGGCTTTTGAGTTCAGCAGGACTCCCTCAGTTGGGCAGGTCGCTCTGGCTTTCCTCCAGGCCTCTTTCGCCTTCAGTGGATGGAACTTCCTGAACTATGTCACAGAGGAAGTGGTTGAACCGCGACGGAACCTACCTCGTGCCATTTACATCTCAATCCCATTGGTGACCTTTGTGTACACGCTCACCAACATCGCCTACTTCTCCGCCATGTCACCCGAGGAGCTGCTCTCTTCCAACGCTGTGGCCGTCACGTTTGGAGAGAAGCTCCTGGGGATGTTCTCTGTCATTATGCCCATCTCGGTAGCCTTGTCCACGTTCGGAGGCATCAACGGCTACCTCTTCACCTCCTCAAGATTGTGTTTCTCTGGGGCCAGAGAGGGACATCTACCCAGCTTGCTGGCCATGATCCACTTTAAGAACTGCACCCCCATCCCAGCTCTCCTCTGCTGTTGTACTGCCACCATTGTAATCCTGTGTATAGGAGAGACACACAACCTGATCAACTATGTGTCCTTCATCAACTACCTCTCCTATGGAGTCACCATCGCAGGCCTGCTCTACTACCGATGGAAGAAGCCCAAACTTTACAGACCAATTAAGGTAAACCTCCTTGTCCCTGTCACCTACCTGATGTTCTGGGCCATGTTGCTGGGCTTCAGTCTGTACTCTGAGCCagtggtgtgtggtgttgggCTGGTCATCATGCTCACTGGTGTACCAGTCTATTTCCTGGGGGTGCACTGGAAATCAAAGCCAAAGTGTATCTATGACTTCATCGAGTCAGCAACCTACGTGGCACAGAGGCTGTGTTTTGTGGTCTTCCCCCAGTTCGACCCCATCGAGATCAGTCCAATCGAAGAATGGCCTGACAAATCTTCCAACATTCTCTCTGGGAAGTCTTAAACTTTTTTTGCCTTCTGAAGTATGTTTCTTTTTGTATATTCTGTCACTGTATGATGACATGGTCCGTTCCTTTTAGTGGAGCCCCTTGTCTGGTCTTTGGTCACCTGAGACTCATATCCATTTCTTTACTGCTAAGTGGAATTGCCTGCGTTTTGATGCATGGGCCACTTGCaaatgtttttcttctctttttctACTAAGTCGTCAAGTACAAGCTAATGCCAACAGTATCACGTTTTGAAACGGACTTCATATTCCCGAAGGAACTATTTGTGCCTTTTCTGTAACTTTTCAACATTGGCAGTATTTTGGTTTTGACCTGAGATTTACTGTGTATCACTGTGCCTTATAGGGAGAAATGTGttccttacatgctgaccagaccggacacgtcgcgtgcgcgagcgttgcaaaataaatttagaaatccattttattcaattattgcacccacactgctcgcgcgcgccaacgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57893 lncRNA downstream 4412 47689120 ~ 47690770 (-) True G51802
TU57732 lncRNA downstream 310694 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 408838 47239133 ~ 47286344 (-) True LOC110524061
TU57317 lncRNA downstream 418834 47275397 ~ 47276348 (-) True G51277
TU57295 lncRNA downstream 440427 47253034 ~ 47254755 (-) True G51261
TU57993 lncRNA upstream 90049 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 110463 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 174973 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 184724 47901229 ~ 47901581 (-) True G51993
TU58111 lncRNA upstream 198443 47914948 ~ 47915246 (-) True G52017
XM_021603483.2 mRNA downstream 6116 47633880 ~ 47689066 (-) False LOC110524125
XM_021603497.2 mRNA downstream 6116 47633880 ~ 47689066 (-) False LOC110524125
XM_036979030.1 mRNA downstream 6116 47633880 ~ 47689066 (-) True LOC110524125
XM_036979038.1 mRNA downstream 12201 47633880 ~ 47682981 (-) False LOC110524125
XM_036979041.1 mRNA downstream 18924 47633880 ~ 47676258 (-) False LOC110524125
LOC110532355 mRNA upstream 9108 47725613 ~ 47733539 (-) True LOC110532355
XM_021603570.2 mRNA upstream 69133 47785638 ~ 47788293 (-) True LOC110524174
XM_021603649.2 mRNA upstream 326987 48043492 ~ 48049196 (-) True LOC110524205
XM_021603662.2 mRNA upstream 355324 48071829 ~ 48123356 (-) True LOC110524212
XM_021603717.2 mRNA upstream 502935 48219440 ~ 48247045 (-) False LOC110524242
TU57798 other downstream 133973 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 316639 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 405501 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 576149 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1745231 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 577603 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1267680 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2695129 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 3048858 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 3061242 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile