RNA id: LOC110532355


Basic Information

Item Value
RNA id LOC110532355
length 499
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110532355
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47725613 ~ 47733539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCGGTCGTGTTGAGGGCCAGCCTTCAGGGCATCGTGGTGGTGGAGAAGACCCGGCTCAGTGAACAGTACTTTCCTGTAATGCAGTAGTTTGTGGTGTATGAGCTCGGTCTCAAACTGCCACCTGTTGCCAGCCAGCTGGAAGCCTCCCAGCTTCTCATACAGATAGTACACGGAGAGAGTAAAGACAACCCGTTCCTCCGGAGGAGTGTGTCTCGGCTGCTGGACCCCCTGGTCATGTCCCTGGTTCAGCAGATCCCTGGAGTAGGGATGGTCAAAGCAATGGCCCTGCTCCAGCACTACTCCAGTATCCACCAGCTGTACAACGCAGGGACCCATGAACTGGAGCCCATCGTGGGCCAGGCCATGGCTCAGCACATACGCAACTTCTTCCACAACCCATTAGTCTGACTCTGACAGCACGACAGCTCATTGACAAATCATTACTTGTTTATGTTCAAATGTGTAAGGAGGGGGCACACGTGAACCTGACACAATG

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57893 lncRNA downstream 34843 47689120 ~ 47690770 (-) True G51802
TU57732 lncRNA downstream 341125 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 439269 47239133 ~ 47286344 (-) True LOC110524061
TU57993 lncRNA upstream 73015 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 93429 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 157939 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 167690 47901229 ~ 47901581 (-) True G51993
TU58111 lncRNA upstream 181409 47914948 ~ 47915246 (-) True G52017
XM_021603531.2 mRNA downstream 3213 47695182 ~ 47722400 (-) True LOC110524148
XM_021603540.2 mRNA downstream 9108 47695182 ~ 47716505 (-) False LOC110524148
XM_021603483.2 mRNA downstream 36547 47633880 ~ 47689066 (-) False LOC110524125
XM_021603497.2 mRNA downstream 36547 47633880 ~ 47689066 (-) False LOC110524125
XM_036979030.1 mRNA downstream 36547 47633880 ~ 47689066 (-) True LOC110524125
XM_021603570.2 mRNA upstream 52099 47785638 ~ 47788293 (-) True LOC110524174
XM_021603649.2 mRNA upstream 309953 48043492 ~ 48049196 (-) True LOC110524205
XM_021603662.2 mRNA upstream 338290 48071829 ~ 48123356 (-) True LOC110524212
XM_021603717.2 mRNA upstream 485901 48219440 ~ 48247045 (-) False LOC110524242
XM_021603707.2 mRNA upstream 485901 48219440 ~ 48247048 (-) False LOC110524242
TU57798 other downstream 164404 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 347070 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 435932 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 606580 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1775662 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 560569 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1250646 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2678095 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 3031824 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 3044208 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile