RNA id: XM_021603550.2


Basic Information

Item Value
RNA id XM_021603550.2
length 4987
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC110524160
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47733556 ~ 47769809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTTTGCTGCGCCTGATTGGTTGACTAAACCAAATTAGCGAATGTTTTCCTCGTCATCAAGTTAGAGAGACCGGTAGTGCTGACAGCAAGGCAGGCATCAAATGGTAGACTTTCTTCTGTTTACACGGTCAGGCTTTTGAAGAAGTGCAATTTGCAATGCGATTCCGGAGTGTTTAGCAGATAAAGAGgAGCCAGAGATCCAGTTCCTTATGGCTCTGTATGATGAGAACCTCCAGAACAACCCTTTTTATCTGGCGCTGGAGAAGCAGCGTCCCGACCTGTGCAGCAGAGTGGCAGAGCTCCATGGCATCGTTTTGGTGCCGTGCCGTGGAAGTCTAACCCTTGGAGCGTACACAGCAGCCCAGTTTGAAACCTACGTTTTACAGCCCTCTGGAGAGGGATATCAGACTGTAGATGGGAAGGAACTGACCATCCAGGACAGCCAGGTCAGACTGGGCACAGGGTTCCAGGCCCCTGCCAACGTGCCCATCCTGTTTGAGGAGACTTTTTACAATGAGAAGGAGCAGAGCTACAGCATCCTCTGTATCGCCAGGCCCATCGACACAGACCAAAGCCCAGtggAGGTGACCCCCAGCCCAGGCCTGTACTGTCTGAAGAATGTGGAGGATGTCCGGGAGTTTCTGGGCCGCCATGCGGAGAAACTGGACAAGTTCATAAGCAGCTTCTGCCATTCCTTTAAAGAGCAGGAAAGGAAGGGACTGCGACACCACATCgACTCAGTGAATGCCCTTTATACTAAATGTCTTCAGTGCCTGTTGAGAGACTCAAGCATGAAAGTGCTGGCCAAACAGGAGCTCCAGATGACTCTCCTTAAACAATCGGTGGAAATGTATATACATCATGGTATCCATGATTTAATCTTTAACTTTGTGGGAACTCTTGAAGCCAGCCAGGATTCTGCCTTCAACAAAACCACCAGAGGTCTGCAGGACCTGCAGCAGAAAGACTTGGGGGTCAAATCTGAATTTAGTATAAATATACCCCGGGCCAAGAGAGAGCTGAGCCAGTTGAACCACTGCACCTCTCCTCTACACAAGCTGCTCTGCCTCAGAAAGGTGGGACTCGCCATCATGCAGTCCCCAAGCAGCTCAGTGAGCATAGAGGCCGTATGTGCAGACGATCTTCTCTCTGTCATTCTGTACTTACTTGTGAAGACGGAGATCCCCAATTGGATGGCCAACCTGAGCTACATCAAGAACTTCCATTTCTGTAGCTCCACCAAGGACGAGCTGAGCTACTGGCTGACGTCGTTCGAGGCCGCCGTCGAGTTCATCAGCCAGGGCAACCTCAACCTGAGCCAGGAACAAAAgGGCTCAGGGGAACTGAACGACAAGGTGCGTTTCACACAGAAAATAAACCTGCTCTGTCAGAACGATGCTACCCCCATCAACTGTCTGTTTGAGcACATAGCCAACGGTAACGAAGCGGAGGTCAAGCGTGTGTTGAGTGAAAACGAAAGCGATGAGGACGGGGTGAAGATGTGTCACCCCCTTTGCTCCTGTGATCACTGTGAGCTCCGGGTCTCTGGAAGACTGAATGACCCGTCCATTGTAACGCCCTTCTCTCGAGACGATAGAGGATACACGCCACTTCATGTCGCTGCTATCTGTGGTCAGTCCCTGTTGATCGACCTGCTGGTGTCTAAGGGCGCTCTGGTGAACGCCACAGACTACCACGCCCTCTCACCCCTGCACCTCTCCTGTCAGAAGGGCTACCAGGGAGTCACGcTGCTGCTCTTGCACTATAAGGCAAACACAGATGCCCAGGACAACAATGGAAACACTCCTCTGCACCTGGCCTGTATGTATGGACATGAAGATTGTGTTAAGGCTCTGGTGTACTACGACCTGCCCACGTGCCGTCTGAACATCCAGAACGACAAGGGGGACACCCCCCTGCACATCGCGGCCCGCTGGGGCTACGAGGGCATCATCGAGGTTCTGCTGGAGAACGGAGCCAGCACCACCATCTACAACAAGGCCAAGGACTCTCCACTacagtgtgctttgaattctaagATTTTGACGCTGCTGGAGTTGACACAACACAGTTCTCACAGAAGAGATGGCAATGATTCCCCTAACCGCTCTCCCGAGGCCTCTGACTGCAGCAGCCGCCGTTCCTCTGTCTCCAGCACcacctcccagagctctgaggcCAGGCCCGACTGCGACAGGGTCCTCCACAAAGAGGTGGAGAAGTTGCTGCGTGCGGCCGCCGATGGAGACATAGAGATGGTGCGGTACCTGTTGGAGTGGTTGGACGAGGAGCCAGAGGAGGAGGAAGCAGGGCTGCCCTCCTGGACTAAGTTGTGCCACCCACTGTGCCAGTGTCCACACTGTGGGCCGTCACAGAAGAAGTTTGTGTGCCTGCAGGCCAGTGGTCTGGGTgtgaacagcagtagtgtggATGGCTTCACTCCCCTCCACGTGGCGGCGCTCCATGGTCACACGGCGCTGGTGTCCCTGCTCAGCCGCAACGGGGCCAACGTCAACGCACGCAACAACCAGAGTGCCACGCCACTGCACCTGGCCAGCCAGAACAGCCACATACAGGTAGTGACATCACTGCTGGAGTGCAATGCCAAGCTGAATAAGAAGGATCGCTATGGCAACACCCCTCTGATTCACACCTGCCTCAGAGGTCACCTGGACACGGCAACCATCCTGCTGCAGAGCAACGCCTCAGTGAACCTGTCCAACATCCAGGGCAACACGGCCCTGCACGAGGCTGTGAAAGGGGGCCACCTGGCCCTGGTGGAGCTGTTACTGCAGGCTGGAGCCTTGGTCCACATGAGGAACAAGAGACAGAGGACAGCACTGGACTGTGCTGTGGAGACCAGGGGAAAAAACACTGAAATCCTGAGGACTCTTCAGAAGGCATCTGGAGACTCCCACAATGCTGAACCAATCAAACTGCTCTCTGTGCCCAAGGGGGCTCTGGGTAAGAGAGTCGGTATAGACACCAGCCACTGTTTTTCCTTGACCACCTACCTGCTAGAGCGTGAAGCACACTCATTTGTCCAGCGGCTCAAGCATCAGCAGGTTAATGTCAGTGGGAGACGTCAGAAGCTGGCCCAGTCAATAAACCGTGTTCAGCAAATGAAGAAAGGTCTTCCCAGGGACACCAGTGTGCCTTCCATCAACTCCCCCACTTCTGAGAGGTGGAAACTGAGGCGGGGGGAGACCCTGGAGAGCGGTGGGCCATTCAGCATCTGCTCTAGCCCAGAGGGAAGCCCCAAGCCTGGTGaccaaagggacagagagagggctcTGAGCCGCAGTCACACTTTGGACACAGTGCACCCCCAGTCTCCTCAGTGGGGCCGGGACCGGAGACACACAGGAGAGGCCGAGGCAAATGAGGACACAAACATAGCTAAAGACCCTTCAGACACTCCAGGTGAACCATTGCATACATACACACCTGACATACACACACCCGACCCGTCAAGTACACGCACGCCTGACATCCCATCAAATACACAACAAACCCCCAGCAGCGACCTGTCACACACTCACGAGGTTCCATCACACACACCTTGCCAAGTCAATGGAGACCGAAACGGAGAGGAAAATAATGTCCACACCTCACCAGACACCGAAGTAGAGTCTAAGAGGAACTGTCCTGAGACTGAGAGCCCACCCAAAGACATGGAGGACCTGGTAGAAGAACTGGTAGAAGAAATAGAGGTACTCTGAGGTGCAGAGGCCAAGGCAGACCCCAGTCAAGGGAGAAATTGCACAGTGTCCAGAGAAGAGTGGGGCCTATTTGTAGTTAGTTGACCTGACTGTTATTTTAAGCACTTTTTCTCCTTGCCTTCACGAAAAAGGGATGCAAAACATGTTAATTCAACTTGATGCGAATGTAATTCTGTTTTAGCTTATTTTAGTTTTGTTGCTCACCCTTATAAAAGAGATGGTCGATAGAACATTCTGACAGTGGATAGTGACATAGCATATCAGtatgtttttattgttttgtctACTTGACAAAAATGCTAATCTGAATATCTATGATTATGTTACatctggatgttttttttttatttgaacatATAAAATCAGGGctctatttttaaaaatgtagtttCATTTGATTACAGTCCTGCGGtttggattttattttatttactgagTTATTCCCATTTAGAAAACCATAAATTGACATAGGTTAGAAATGTCCATTTATGGTTTTCTATCTATAACACAATGTACCTCCCTGGTGTGTGGCATTTGAATGACTATGCATAGTGAGGCCACACTTGTATCCCAGTGAATGTCGAAACGCTTAGAATAGTTATCTTGGTTGCTTTGTAGGTAGAGACAGAACCATAACAGTGTATACGCACAAATCTTTATACGGTAGCTCAATCCACTGACTCCACAAATGGATAGTACTGTCGCTAAATACTGCTTTTGAGAATATAATAACACAATTGCCATATTTAATTTGTTTATCCATCACCTTTACTCTATTCCGATATTTATCCTGTAGAAAATAATCGaatgcaaaaacaaaagtgtTTTAATGTAGCATTCAACTGATAATTCAATTTCACCTCTATGGCAGTTGATCCTAATCCTGCAAAGCGAGGCCATATAGGACCCAACCAATTCTATGGGGAGTTTGCACTTTCGAGtaccattttttttgggggggggggatgttttaTCAGCAACACTCTGAAATATCAGTAGTTTTGAACTGACATTTATTGAACTCATCATTATccagcacatacagtacattgaacacAGATGACTAGCATCAGTGTACAGATGTATTTTGTATTTCAAAGTTACTGTTTTGGTTTATACAGTAGCAGTTGTCCACTCCAATCTCAATGTTGATTATTTTCCTACTAAagtattttattacatttttttaaatgttagatGCAGTGAACGTGCCTTATTTAATTTGTCAAATTAACCTGTAATAAACTCATGATCAAGAGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57562 lncRNA upstream 42519 47688654 ~ 47691037 (+) True G51503
TU57501 lncRNA upstream 103612 47588023 ~ 47629944 (+) True G51442
TU57398 lncRNA upstream 154430 47430756 ~ 47579126 (+) True LOC110524112
TU57350 lncRNA upstream 332755 47399288 ~ 47400801 (+) False LOC110524097
TU57351 lncRNA upstream 332755 47399288 ~ 47400801 (+) True LOC110524097
TU57619 lncRNA downstream 57722 47827531 ~ 47834361 (+) False LOC110524181
TU57621 lncRNA downstream 57722 47827531 ~ 47830029 (+) False LOC110524181
TU57611 lncRNA downstream 66355 47836164 ~ 47853332 (+) False LOC110524181
TU57615 lncRNA downstream 69750 47839559 ~ 47851286 (+) True LOC110524181
TU58040 lncRNA downstream 103724 47873533 ~ 47874484 (+) True G51946
XM_021603465.2 mRNA upstream 154394 47430652 ~ 47579162 (+) False LOC110524112
XM_036979007.1 mRNA upstream 154394 47430735 ~ 47579162 (+) False LOC110524112
XM_021603439.2 mRNA upstream 332412 47383613 ~ 47401144 (+) False LOC110524097
XM_021603425.2 mRNA upstream 351946 47340166 ~ 47381610 (+) True LOC110524092
XM_021603401.2 mRNA upstream 393557 47316298 ~ 47339999 (+) False lamb4
XM_036989632.1 mRNA downstream 19258 47789067 ~ 47824464 (+) True LOC110520968
XM_036979069.1 mRNA downstream 54727 47824536 ~ 47851159 (+) False LOC110524181
XM_036979084.1 mRNA downstream 179656 47949465 ~ 47978305 (+) False rpgrip1l
XM_021603604.2 mRNA downstream 179927 47949736 ~ 47978305 (+) False rpgrip1l
XM_036979077.1 mRNA downstream 179927 47949736 ~ 47978305 (+) True rpgrip1l
TU56739 other upstream 474658 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 872092 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 1740665 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 1740665 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 1996776 45735053 ~ 45736780 (+) True G49335
TU58177 other downstream 236865 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 610733 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 1123688 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 2267765 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3680013 51449822 ~ 51450935 (+) True LOC110524575

Expression Profile