RNA id: XM_021603570.2


Basic Information

Item Value
RNA id XM_021603570.2
length 1949
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110524174
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47785638 ~ 47788293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccagAGCCTGGCAGGTTGAGCATCGACAAAGCGTTCCGTTGGAAGGCTACATGCAGACAACTTTCCCTGACAAATTGCTGCAGCAAACAACAACAAACCAACCAACGCAACAGTTCGCAATGTTATTAAATGGATTAGTTGTTTTTCAAATGCGAACATTGAGGGAAGGGAACTGTTTTCAGGTGTGAGTTTTCATGCGCTTTccttgtgtgtgtgcatctaagGTCGAAAGTGCACAAGTGGACATAAGTGACTGACTTTAGGAAGTCACTCACCATGGCCTATCCTCAAGGCTTTCTCTTCCAACCGTCGGTGTCTCTAGCTCTCCATTCCTGTCCCCCGTTCAGTTCCAGTGTGATTTTAGGAGGACCAAGGACAGAGGAACTGGGCCGGTCGTCTTCAGGCTCAGCCTTCGCCCCTTACGCGGGATCACCGGCGTTCAATGGTTCATCCCCTGGCTTCAATTCTCACCTCCAGTATAGCGGAGAGCAGACCGCGGCACTGAACTCATTTGTGGGCTCCGCGTACGATCCCTCGGCGGGTATCGCTGGCTCTTTAGAGTATCACCCGTTCGGTGTAGCATTGGGCTATCCATATGGAGACCCTGCATACAGGAAAAATGCTACAAGAGATGCGACTGCCACTCTCAAAGCGTGGCTCAATGAACACCGTAAAAACCCCTACCCAACCAAGGGTGAGAAGATCATGCTGGCCATCATTACTAAGATGACCCTTACCCAAGTGTCCACCTGGTTCGCCAACGCCAGACGGCGGTTGAAGAAAGAGAATAAAATGACGTGGACCCCGAGGAATAGAAGTGAGGATGAGGAAGAAGATGACAACATTGACCTGGAGAAGAATGACGACGAAGAAGAGCCACTTAAGCCCACGGCAGAAATTGGGTCGAAAAATGAAGCAGTTGGGCAGCATCCAAATCCAGTGGGAATCCCCTGTGAGAAATACAAAGAAGACAATAGCGGCAATGACATGGAACCTGTCTTAATTGATCCGAATGTAAAGGACCACGGGGACAGGAGAGTGCCCGAGATGCCACGGCCCACCACCGCAGCATCTCCCCAAAACGCGGACCTTGGAGTGGAAAGGGATTCAGACTCCGCAGCCTCGGAAAGTCCACCTCCACTGAGGCGTAATGACTCAGGCAACTCCAGCAATGCTACATCAGTGATTCACTCGGCCCTTCCGGCCCCGAAACCAAAACTGTGGTCGCTCGCGGAGATTGCAACTTCTTCGGATAAATGTAAAGGGTGTAGTGATGCCGCTCAGACCGTGCCCAGACAATTACGTACAGAAATTCCGGGCGGTAGGCCTATGTCATCTCCATTACGAGACGCTTCTCAGAATATTTTCCCTCACAGTGCAGCCCTATCCAGACATGTCTATTATACGTCTCCCTTTTTCCAGGGTTACTCGAACTATCATGGCACTTTTGGACACCTGCAGAACCCCGGATCCAACATGGGGTCAGCGACGCATTTAAATGGATTACATCAAACTATGTTACACAGAGCCGAGGCTCTGGCAAGAGACAGCCAAGCCAGGAGCCAAACACAGATAGATATTTGTAAAGACTTGAGATATGAAATTAAGAAAGGTATGACACATGTCTAGTAGCCTGTGTGACATTTGGTAAGCTATAGGCTCTATATAGACATTTTATTTATTGTCCAACTGGGAAAAGAAACTATATTTTCAGTCGGGGAAAAAAACATATTGAGATGCAAATGGCACAATGACATTGACTATTCCTGGGAGTCCCTAAAAAGGCAACAAACAATTATTTAGGAATGTGAATATTCAAttattacatttagaatgttttaaGGGATAATGTGGAGGGAAAAAAAGTGGATTCCTTTGTCAAACCACGTGGTGAATAATTATTAATTAAAGAAGACTAGTTTTATTGTAGTCTTTTTTTAGAAGAAAA

Function

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57893 lncRNA downstream 94868 47689120 ~ 47690770 (-) True G51802
TU57732 lncRNA downstream 401150 47383658 ~ 47384488 (-) True G51652
TU57250 lncRNA downstream 499294 47239133 ~ 47286344 (-) True LOC110524061
TU57993 lncRNA upstream 18261 47806554 ~ 47806900 (-) True G51899
TU58008 lncRNA upstream 38675 47826968 ~ 47830052 (-) True G51914
TU58071 lncRNA upstream 103185 47891478 ~ 47891884 (-) True G51977
TU58087 lncRNA upstream 112936 47901229 ~ 47901581 (-) True G51993
TU58111 lncRNA upstream 126655 47914948 ~ 47915246 (-) True G52017
LOC110532355 mRNA downstream 52099 47725613 ~ 47733539 (-) True LOC110532355
XM_021603531.2 mRNA downstream 63238 47695182 ~ 47722400 (-) True LOC110524148
XM_021603540.2 mRNA downstream 69133 47695182 ~ 47716505 (-) False LOC110524148
XM_021603483.2 mRNA downstream 96572 47633880 ~ 47689066 (-) False LOC110524125
XM_021603649.2 mRNA upstream 255199 48043492 ~ 48049196 (-) True LOC110524205
XM_021603662.2 mRNA upstream 283536 48071829 ~ 48123356 (-) True LOC110524212
XM_021603717.2 mRNA upstream 431147 48219440 ~ 48247045 (-) False LOC110524242
XM_021603707.2 mRNA upstream 431147 48219440 ~ 48247048 (-) False LOC110524242
XM_021603724.2 mRNA upstream 431147 48219440 ~ 48247048 (-) True LOC110524242
TU57798 other downstream 224429 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 407095 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 495957 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 666605 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 1835687 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 505815 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1195892 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2623341 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2977070 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2989454 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile