RNA id: XM_036979069.1


Basic Information

Item Value
RNA id XM_036979069.1
length 4901
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110524181
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47824536 ~ 47853332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgcAGTTTGATGTTTTACCAAAACAAATACATAGTTCCTTCTTGAATAGTCAGTACTATGCCAAACTGTACGAAGGAAACTTAGTGTGACGTCAACATATTAAGTGTATATCCTCTACTCTTCAAATGGCCTCCTTGATTTACCCCTTGTGTAATGGGGGAAACAGGCGGTGGACTCAAATGACACAGGTTTCAATTCTTCAGACCCCCACTAAATATACTGCACTACTCTCTCCAGTGTGCATCGAcagcccctctcctccacctattGGCTAACACGCCTGTATTGATTTCTATCTGACCGGTCCGCTGGCTGGTTAAACCAATCCCTCCCTTCCCACTGAAGCTCTGGCGTTCGAGTGGGAGCACTTACAAAACAATGGTCTTAAGGAAATCAGACGCTTCAGCTACAACAAACAAGCAGTTAGTAAACTTCTTAGCATGACGAaatgagggaggatggagaggtggagggacagagagatggagggagagagactcccCACCTTTATCAGAGGGACAGGAGAGCCAGATTAGAGAAGAACATGTGACAAAAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAGGACAGGTTATCCCCCTTTCCAAAACCTATGATTCTATCCAAGATTAAAGGTGGAAGGTGTTAAAAAATCTCAACAACCAGCTGTTGTGAACCATGATAGGTTTAATTTTTGTAAATGATTAAAATGATCAAATAATACATTATTGACAAATTCTGCAGACAAAACTGAACACTATTAATATTAATACTCCTATAGGAATGACGTCTTATACTCTAACAAGAACCATAATATTCAATATTCTCTTTCTCCTATGAACTGTACTGCCCGATGGCCGTTCTACAACTGTTTTGTGTTAACCTGCTGCTGGAAACCAAGGGGGTGAGTAGTGGTATTTTTACATGGTCCATGTGCCTCCTTTCTGTACTGATCAAACATGTTGCTGCTGGCTTACAGCTAAAACAAAACATCCCCAATACTTTTATTTCAATTAGCTAAGCATTGATAATTCATAGTGCTCTTTCATAGTGCTCTGGCAGTGTCAAAGATTGGACAAAGGTTGGGTGTCTCGCTGTTCTTTAAAACAGGAAGAACATTTATTCAGAAGTCTACTAAATGGGATTCACACCAACATCCAATTTCTGACATGTATCAACTTTTAAGGTAtgacccaggtgcagacagtgttgaagaaACTGAAGTTTATTCTTTatacaggggcaggcaaatgacaggtcaaggcaggcaggggtcaaggcaggcagaacagGCAGAACcgggaaactagaaaacaggagtaAGGAACAGGCGGGAGCAGGGAAACAAAACGCTGGTAGGTTCTACGAacaaacaaactggcaacagacaaacagagtacACAGGTAttaatacacaggggataatggggaagataggtgacacctggaggggagtggagacaagcacaaagaaagTTGAAACAAATCAGGGCATGACAGCATATGTTTAtctacaaaacaaacaaaaagctGAAATTGTTTTGCAAGGCACAAAAACACACCACCCTACATTCTGACATGCCTTGGTTCTCCCTATCACCctacagtcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtattgtcCTACAGGGCTGGTTATTTTTTATCAAGCCTTTCTTCAGGCGTCTGAGGTTTTGTTTAGTATTACGGTCAGTCAGTGTAATGGGCCAGAGAATCCAAATGACTGTATCCACTGAGTTTAGCTCACTCTGTAGTCATGGGCTAGGTCCCAAATgacaccgtattccctatataatgcactacttttcatcagggcccatagagctacTTAagagactagggtgccatttgggatgcagacatgaCGCCGGAGCCCAGATGATCATGGTGTGTAATGATATTGTAATTGAATGGTAATTAAAAGTTGAAAAAACACACAGCTTTCACTGCCTGAAGGCAGATTTATACCACTATACTGTCCTCACCAGATGAGAGCTACTGATCGTTTTTTCGTAGAATGAAACAATTCCATGAACTTTGcagtgttttttaaattttatgtAGGTTTTTTGTTTGAACATTTGGTGTGTTTAAACACAGAATTTCACTGCCACTGTCATTTGTACAGAAATGCAGCATTACTTTGGTTTAGTTGAACCCCAACCAATACTTTCTCTCTAACTGGCTCCACACCAGTATGCTACAACACAAAGGCATTATTTCACTTGCTATGAAAACTTTGTTGAGGTATGTCTGTTGAGAATGTTTCAACCAGCAGAGCATATGGTAGCCTATTGCCACAGTCCGGCTTTGAAAGGCAACTGCTGAAGCCAGAGCAGGAATTTCACACAGCGTTGAGTGAGACTGCATAAACAAGCGCTAAGCTGTCTATTGAAAGGCTCCAAAGCAAAAGACCTCGTCCATATGGCCTCTCCTACAACTCTCCCTCCTTCAGTCAGTTTGTATAGCCCCCCCCGATATCAGCTCCATGGGCCCCACCATGCAGAAGTAACAACATCAATGGTGTAAACCCTTGCCACTTGAGATTATTACATTTCTTTTTATGCTTCACTTGATCAAAATGGAAGAAGTGGAATTTACGCCTTTTTGATGTTCTTTTTCCTGCTGCTTTCAGCGAGGCATTGGGAACTGGTTTTGTTGTTCGTCCCTGTACCAGAATACCACCCACTAAAGGGCCACAGATGCCAATCTGATGGTAGCAGACGGTCGGATGGCAGTTACCAGTTTGAACAGGGTCACTGTTGTCAAACTGTCCCATGATGCATGGCAGATACCTCCCAGAAGgcttctctctctattcatggGCCGGATTTAAAACACCCTGTTTTAAAGAAAGGTTGTACCTTACGGCCACAGTAAATCTAATGCAATTTATGGTGTGCCATAATGCTAACTAACATGGGACATTTTGTAAACAGTAGGTACTGGTTTAAACACAATATGATACTGTTCGATTGTATTGTATTCAGCAACTATGTGCATCATTACTAATCCTATAAGTGTAACCgcaaaacatttatttcattttttattattttttttaaatcgttgATGTAAAGTGGACAGTCATACTGGTCACAGTTGCTCATCATAACATGGAGAGTGACAGTAGCTCCAGACCTGGATGGAGAAGCGTTTTTTTTAATCAGTTTGTGTCTGGAGCGTTGGGGAGGCCAAACAGTCTGACGGAGTGACGGAAGAACCCCAACAGGCATCACAGAGCTCGGTTAGCACCTTGTAATGAAACCAGGCCTGGGTAAAGCAGCTTGGCAGCATCCCGCCTCGACGCGCGCAGTGGTCAGtctacattaacacacacacacacacgcatgcatgcgctccccacacacacacttaaagggGGCTGCTGCAGGCACCCAAAAATAACTCCCGTTAGCTATCCCGCAGACagacattcccccccccccctcctcccagccATTGGTTTCTGCTAGATTTCCGCGCTCTCGGTTGTTGGCTGAATGATATATATTGGCGAGAGATAATTAAACGCTTGGAAACCAGTGGGAAACACTGTTCTATTTGTTTCATCTAATCTACTGTACCGCAACATGGTAGTGACAGTGTAGTGACAGTGTGAGGTTGGTAGGGAGCGGGACGGGGTAGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGGGGTGGAAAGGCCAGGGTTGATGCTGTGTGTCCTTATGAAAGGGATGgggtggaaagagttttaaccatcTCAGTGTTACAAGATACAAAGAATCAGTTCAGAAGGACAAGAAGATTACTGTTACTATAGTTCCCTGCATTCTCTATGGGGACTATCTTAATCTTAAAAGGAAGATTACGGGGAACTCTTGTTGATTGAAGGGTTTAGTttgaacccatgccaaatctgaaCAGAATAGGACCAAAGGTGTCAATGAATGGACATGTCAGAGAGTGAACCCATCAAAGCatgcctctcctctcacctctctctactTTGATGTGCTTCGACTGGGAATGTGGACGGAGGGGAATAGCTAGCGTCCCGGCTCTACATCAATACGTCCACGCGGACAATAAGAATAGCTGCTCTGGAGAAAGGCAGAACAGGGATGGAATCCGGACATAATACAAAGGGATACACAGTTTACGGCGCTTCACTGGGCAACCAAGCAAGGCTGCGTGGAGGCTGTGGACATGATGGCTCGCACCGGCGTGGACGTCAACATCAGATCGGGGGGCTATACAGCGCTTCACCTGGCCTCTATACACGGACACCAGCACGTCATCCAGCTCCTGATCAACATCTACAATGCCAGAACTAACATCAGGGACTACCATGGGAAGCTTGCAGCCCATTACTGGAGTGGCAATGCTGATGTGTTCAACAAACCAGGCTCGCAGTCATGTGGGAAATGGTCATCAAAAGGAGGAAGAAAGGCCCAGCGCTACACCAACCtaccctctctgctcctctctcgcTCGCGGAGCCAGGGGAACCTCAACAACCTGGAGTTTGGGACTGCGCCTCAGACCCCACGGCCCCCCCGCTCCCCATCCAGTATAGACTTCCACAGCTTTCAATCCCCACAGCTCTATGGAGATCATTTCTGATTAAAGATAGataataattgttttattttgcatcccaaatggcaccctattccctatatagtgcatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57579 lncRNA upstream 49518 47719911 ~ 47775018 (+) True G51520
TU57562 lncRNA upstream 133499 47688654 ~ 47691037 (+) True G51503
TU57501 lncRNA upstream 194592 47588023 ~ 47629944 (+) True G51442
TU57398 lncRNA upstream 245410 47430756 ~ 47579126 (+) True LOC110524112
TU57351 lncRNA upstream 423735 47399288 ~ 47400801 (+) True LOC110524097
TU58040 lncRNA downstream 22374 47873533 ~ 47874484 (+) True G51946
TU58077 lncRNA downstream 44668 47895827 ~ 47896045 (+) True G51983
TU58128 lncRNA downstream 74801 47925960 ~ 47926333 (+) True G52034
TU58142 lncRNA downstream 85229 47936388 ~ 47936693 (+) True G52048
TU58157 lncRNA downstream 93311 47944470 ~ 47944802 (+) True G52063
XM_036989632.1 mRNA upstream 72 47789067 ~ 47824464 (+) True LOC110520968
XM_021603550.2 mRNA upstream 54727 47733556 ~ 47769809 (+) False LOC110524160
XM_021603558.2 mRNA upstream 54727 47733558 ~ 47769809 (+) True LOC110524160
XM_021603465.2 mRNA upstream 245374 47430652 ~ 47579162 (+) False LOC110524112
XM_036979007.1 mRNA upstream 245374 47430735 ~ 47579162 (+) False LOC110524112
XM_036979084.1 mRNA downstream 98306 47949465 ~ 47978305 (+) False rpgrip1l
XM_021603604.2 mRNA downstream 98577 47949736 ~ 47978305 (+) False rpgrip1l
XM_036979077.1 mRNA downstream 98577 47949736 ~ 47978305 (+) True rpgrip1l
XM_021603625.2 mRNA downstream 131887 47983046 ~ 48013346 (+) False LOC110524199
XM_021603636.2 mRNA downstream 131887 47983046 ~ 48013346 (+) False LOC110524199
TU56739 other upstream 565638 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 963072 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 1831645 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 1831645 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 2087756 45735053 ~ 45736780 (+) True G49335
TU58177 other downstream 155515 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 529383 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 1042338 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 2186415 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3598663 51449822 ~ 51450935 (+) True LOC110524575

Expression Profile