RNA id: XM_036979077.1


Basic Information

Item Value
RNA id XM_036979077.1
length 5525
RNA type mRNA
GC content 0.51
exon number 26
gene id rpgrip1l
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47949465 ~ 47978305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTATTTGTgagattattttgatgtgatatgaaagtctAGGACTTTATGTTTCTATAACCGCAtcgcaattgagaatcgattcacgtttagatggagtatttggctgttttggtcCTTGGACCTTAAGGCTAACAGTAAACTCCATCTTGGGCTAGATTAAGGCTTGTCAACATGGTAATGAAAGGAGACAGTGTAAAAGACACAATGCATAGGAACATTTACTGAAATAATGCCTATCAGCATTGCAAAGTAGCCTACTGCACCAAATACCTTTTAGATATTGACTCACTGTACATAATATTGTGAAATGCTCAGTCTTCTGACTGTACTGCTCTTCTCCTGAAACTACGTATCCCATGATTCTTTTGAAACGCATGCGCACATGGGAACAGGAAGACAATTGTTTGTTAGCAACAGTCGCTGAGGAGTGAAGTGTTTACGTGAAACGATTGAACCATGTCAACGTTTGCTGACGAGACTGCAGCAGATGTGCCCGTTAAAGACATCACCCTAAACCTCACTAAGGTTGGAGTGGGATTATCAGAGATGCTGGTAGCCCAGAATGCCCGGGCGAGGCAGGCGATCTTGCGGGTGAGCAGGGAGGAGCTGGAGGACAGGTTCCTACGGCTCCATGAGGAAAACCTGCTcctcaaacaacacacacacaaacaggaggACAAAATCAAGAGGATGGCCACCAAGCTGGTGCGCTTGGTGAAGGACCGTCGGCGTGTGGAACAAGTGGCTGCAGGTGGGGTGCGACCAGGGAGCCGGGACGTGGAGCTGGAGGAGATGATGGAAGAGCTGCAGGAGAAGGTCCAGGAACTGCAGATGCAGAATGAGGGCCTGAAGCAGCGCCTGTTGGCCGCCAAACAGCAGCTGCAGACACAGAGCAAACGGCCCACCCCCTATGGCCATGTCCAATCACGAGTCAATACAGGCCTGCGGAGGCTGAGGGAGGACACGTTCAGCCTGGCTCAGCTACCCCCTGCTGCCCCCAGAGGCCCTAGAAGTGTGGAAGTGGAGATGAGTGGCAGGGCCCCTCAGGGTCTGCTGCCCAGATACGGACACAGTTTGCTGGACGACGCCAGAGCTGAGATCCGCAATCTTGAGAATGTGATTGAGACCCAACGGTCTCACATAGAGGAGATGGACAAAGCTACAGAGCTGCTAAGGGACCAgctgaggaggaaggagagaaaattTGAGGAGTCGCTCCTCCACCTGCGAGAGCAGCAGACCACTGGGCAGAGATCTACTATCAAGGACAACGTGGAGATGATCAGGTTGCAGAAGCAGCTTGTTGAGAAGGGCAACGCGTTCACTGTGCTCGAGGGCCGATTCCTACAACTCCAAGAGAGTCAGAGGACCCTGAAGGTCAGTCATGAAGCTGTGATGGCCAAGGTGGATGAGTTAATGGGCCAGCTGAAAGACGAGCGACTGAGGAGTCTGGGCCTGGAGAGCCAACTACAGGCCAACTCATTCTCacagagaaggacagaggagTTGCAGGAGCAAATCTTTGacctggagaaggagagagtgttGCTGAAGGAGAACTGTGATAAACTGGTGAACAGTGCTTTCGATGTAAGCCAGGATCAGACATTTAGGATGCGGGAGCAGCAGCTGAAACTACAGATAGCCCAGCTAGAGTTGGCACTGAAGTCGGACCTGACGGACAAAAACGAGATTCTGGACAAGATCAAGGTTGAAAGAGaTATGAACGAAAAATTGAGCCAAGAAAAGGAAGACATTCAGCTTCGGTTCCTGGAACAAAAGCAGCAGTTAGATGAAATAAGGGATCGAATCAAGTTTTACACCAAGGAGAGTGAGGTCGATGTGGCAGAACTCAGTGAGGCACTGATGCTAATCAAGGTGCGTAAGTCCCAGAGGAGTGGTGAGCTGGGCTTCCTGgagcaggtggaggaggaggtgcgtAGCGACACGGAGCACTCCGTGAGGGAGCTGCAGGCCACGTACGCTGAGACCATCCAGGAGCTGGAGAAGACCAGGAACATGCTCATAGTCCAGCACAAGATCAACAAGGACTACCAGGCGGAAGTTGAAGCGGTGACGCGTAAGATGGATGACTCCAAACTGCAGTACGAGCTAAAGTTGGAACGCCTTGCCCAGCTGCTGGACATGAGGGCTGCCAAGATCAAGAAACTAGAGGCCCAACTGAAAGACATTGCCTACGGCACCAAATCACACGTTTTCAAACCCGAGGTTACCGACGACGACGTGGCCGACGAGTTCGACGAGACCGTACACCTAGAGCGTGGAGAGAACCTTCTGGAAATCCACATCGGCATGGCGACCCTCTCCCCAGTCGCCCTGGAGACACTGAGCGACCGCGAGCCCTCCACCTTCTGCACCTACGCCTTCTACGATTTCGAGCTGCAGGCTACACCCGTAGTCAGGGGAGCCCGGCCGGCGTACGGCTTCACGTCGCAGTACGTGGTGAGGGTGGACGATCTAttcctgcagtacctccacacgGGTTCGGTGACGCTGGAGCTGCAGCTGGCCCGGGGCATGGACTTTACGACTGTGGCTGTGGGGCAGCTCAGGCTGTCGCAGCTCCTAGAGAACGACAGCAAAGCCCATGGGATCGTACAGCTGGTTGGTGTGGCTGGCGAGGTGCAGTCATTTGGCTCTGTGGAGTACTGGGTGAGGCTGCGGGTGCCCATGGAGCAGGCCATTCGGCTGTACAAGGAGAGAGTGAAAGCCCTGGGCTACCTCGGCTCTGCTTTCAATACGGAACAGCAGGAGtcaacctcaaccctaaccccccaTTCAGTGTCAGCCGACGGAGGCATGAACCTGAATGAGCTCAACGTCACCGTCCGATGCTGCAGCAACCTGACCTCCCGCCATGCCCAGCCACCCAGCCCCTACGTGGTCTACCAGTTCTATGACTTCCCTGACCACGACACCTGCATCGTGGGCGACTGCAGCGAGCCTCAGTTTGAGGACAACATGTCCTTCCCAGTGGCCATGGAGGCAGAGCTGGACAGCTACCTGAAGGCAGGGGCTCTGCTGCTCTACGTGTTCGATGACCACGATACCCAGAGTGAGATGTACCTGGGCAAGGCCAGGGTGCCCCTCCTGTCTCTGGCCCACGACAAGGCCATCACTGTTGGGCCGCTCCAACCATCGACATCCCCCCTGTGTGTCCACATCTCAGGTACATTTGAGCTGACTGACCCGTCCGGCCTCCCCAGTGGCCATATTGATGTGACGCTGAAGTGGAAGTTCacctacctgcctcctcctggcTCTACCATGACAGTTGAACAGGCCAAGTTTGTACCCAAAGAGAGACCAGTGAAGCTAACAACACGAAAGGTAGAGGAGAAGAAGGTGGAAGTGGAGgaaaagaggaaagaggagggggggaagaaagaggagTTGAGGATGGTGGTGAAGGAAGAGAAAAGGGCCAAAGCTTTAATTCCTCTTCCTACTACTTCAACTGCATCCGAGATGCCGTTACCAAAGCCTAGACTACGGACCGTGGTGAAAGAAAAAACGGCAAGCAAAAAAGTCTCATTCGTAGATGTCACAGCACCCGGAAATCAAGAAGCTAAAAACTTTTCATGTCCCTCTATTTTGCCTGGAACAGAGAAAAGGGAAGTCTCAAAGTTACTGCCCCTAACAAAGGTGTTCACAGGGTCAGCGGTAGCACCAGAGCCTCCTCAGAGCACcacagaggaagaggatgatgaggaAGAGTCTCACTTCTCTGAGGGACAGGTGATCGTAGCCAGCTCTCAGTCTACCTCAGACGAATCAGACATTTCCGAGGAGATTCTCGAACAGATGGAAGactTGGAGGCGGCCCCAGTGGCAGAGGACGAGGAACAGAGTGAATCTATCCTCTCAGACAGTGATGACTGCATTGTTCCTGGCCAGTCCTCCATGGGACGGAAGCCTTCGGAGCGCGTGCGCGTGGAGATCGTGTCTCTGAGCCTGAGGCCTGAGTCGCGGGCAGCAGCAGACTGTAGTGTGGTCAGGTTGTTTGTAGAGTACTCCCTGTTGGACATGCCCTCTGAAGAGACGCCACTGTCCCTGCCCAAACCCTCGCCGGGTAAGACCAGCCACTACAACTACAGCAATGTGATTCATGTGGACATAGAGAACAACAAGTCCAGACGGGAGATTCTAAGGGGGGTGCTAGAGGGACGCAACCCCCAAATGGAAAGTATCAGGTTCACGGTGGTGAGCGAGCcaccggaggaggaggagcaggagaaagagTGTGAAGATGTAGGCGTGGCCTTCTTCAGGATCCCTGACATCCTGGAGCAACAGCAAGACCTGATTGAGACCAGCCTGAACATTGTGGATGTGCAGGACAACAGTGTGGtggtgggcagtctgtgtgtgtctgtagaggGACTGGAGGCACTACAGTCTATCATGGAGGACGCAGACCATGACTACACGCCCCTCTCCTCACTGGAACAAAAGGCAGAGGGTTAACTCGCAACGGACATTTTACTAGTGTGAACGACTTGGGTGTTTAGCCTTGCACACCACAAGACTGCATCAGCTcattgagctaaagcctaggcattagctaGCACAAGTCTTCTGGTCTCAgacaaggttactcatcacatAAAAATGCTTCACCAAATCACAGCTGTGACACTagaaatcagtggaggctggtgggcggCGCTATAGGAGGACAAGCTCATTGTAATGGATgggatggaacggagtcaaacttGTGGTTTCCATATATTTGATTTAATTCAATTCCAGCATCTACggtgagcctgtcctcctatagctcctcccaccagccgaCTGCTAGAAATAAATTTTACTGCTGCTTACACAAGCATTCATCACTTCACTTATTTCTTCCCGGGAGCTACAAGAAGTAAAACTTGGAATGTGTAATGGCTAATGTGGTCTATGGACACACTTTTCTATGTTCTGATACTGTTATGTATGCAAATGAATCATTTGCAAATTATACTGTATTTAGGTAATGTatttcatttatatatttttatagttGAAAGGGATTATTTTACGAGGCAGTATGGCACTCCATGTCAGTGGCGTGATGTGTGAAATTGTGTTGGTAAAAAACTGTGTATTTATATGGCCTTGTGACATTGGCTCTGGTTATAATTGGATAATTAGCACGAAGCAGGAGTAATGTACGGAGTGTGAAAACGTGTacctcaaaaatatattttatatctgaaaTGAGGGTGTTCAGTAGAGTTGTAGAATGTCCAAAGCATTGAGAAATATCTTATTTTTACCTGTGTTAGAATAATAAAGAGTTTAGTTTCTAAATTACCTTATTTTGTTGTATATTGATTCCTAACCATTTGTTTAGTTTTAATGATTGCCAGAACAACCTCTATTTGCAAACATCCTTTTGGCATGTGAAGTATTTGGCAGGATTTAATATTGCAGGGTTCACTGGCTCTGATAACATTTGCTCAATTCCCTGTGACATATTAAATATCTGCCCCCAGAGGTCAAGGCAA

Function

GO: NA

KEGG:

id description
K16550 RPGRIP1L; protein fantom

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58157 lncRNA upstream 4934 47944470 ~ 47944802 (+) True G52063
TU58142 lncRNA upstream 13043 47936388 ~ 47936693 (+) True G52048
TU58128 lncRNA upstream 23403 47925960 ~ 47926333 (+) True G52034
TU58077 lncRNA upstream 53691 47895827 ~ 47896045 (+) True G51983
TU58040 lncRNA upstream 75252 47873533 ~ 47874484 (+) True G51946
TU58185 lncRNA downstream 46025 48024330 ~ 48030842 (+) True G52086
TU58198 lncRNA downstream 63742 48042047 ~ 48042350 (+) True G52099
TU58200 lncRNA downstream 66452 48044757 ~ 48044972 (+) True G52101
TU58201 lncRNA downstream 67198 48045503 ~ 48045740 (+) True G52102
TU58206 lncRNA downstream 76824 48055129 ~ 48055350 (+) True G52107
XM_036979069.1 mRNA upstream 98577 47824536 ~ 47851159 (+) False LOC110524181
XM_036989632.1 mRNA upstream 125272 47789067 ~ 47824464 (+) True LOC110520968
XM_021603550.2 mRNA upstream 179927 47733556 ~ 47769809 (+) False LOC110524160
XM_021603558.2 mRNA upstream 179927 47733558 ~ 47769809 (+) True LOC110524160
XM_036979007.1 mRNA upstream 370574 47430735 ~ 47579162 (+) False LOC110524112
XM_021603625.2 mRNA downstream 4741 47983046 ~ 48013346 (+) False LOC110524199
XM_021603636.2 mRNA downstream 4741 47983046 ~ 48013346 (+) False LOC110524199
XM_036979097.1 mRNA downstream 4741 47983046 ~ 48013346 (+) True LOC110524199
XM_036979102.1 mRNA downstream 169094 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA downstream 169099 48147404 ~ 48163741 (+) False LOC118964788
TU56739 other upstream 690838 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1088272 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 1956845 45992273 ~ 45992891 (+) False G50010
TU55850 other upstream 1956845 45992505 ~ 45992891 (+) True G50010
TU55125 other upstream 2212956 45735053 ~ 45736780 (+) True G49335
TU58177 other downstream 28369 48006674 ~ 48024958 (+) True G52080
TU58443 other downstream 402237 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 915192 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 2059269 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3471517 51449822 ~ 51450935 (+) True LOC110524575

Expression Profile