RNA id: XM_021603649.2


Basic Information

Item Value
RNA id XM_021603649.2
length 4327
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110524205
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48043492 ~ 48049196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAGGGACTCCCCCCACCTTGGACTATTGTGCTCATGTCTGCAGTAGATGCTGTGCTGAGTTTGTTGAACTATCAGATCTGGAACGACATGTCAGGGATTGCTTTTCCAATCAGTTAGTCCTGATTGTCAATGACAATGAAGACCTAGTGCCGTCTGCTGAAATGTTCCCTCTAGCCTCGTCGCCCAGTACACCAGGCGAAACAGTCAACAACTCTGAAATGGAAGAGTGCAGTGATCTTTTGGAGGAGAAACCAGAGGGGAATGAAGACTCTATGGATGTTTCCAGAAGTAAGAGAAGCAATGGCCGGCtagatagcaccagtagcagccGGAGCAGCAGTACTGACAGCCTGACTGATATTGTCTCATGTTTCTCAGTTCTCCCAATTTCACTACCTCAACCTTGCAACAAACTGTCGGAACAGCAGGGGACATTATCATGGTTCAACAGCAACGTCATCATTGAAAACCTAGAGAGCACTAAAGTGGCAGTGGCCCAGTTTTGCCAGCAGAGCCGATCGGACACCGGCTACAGTGGCAGCAGTAAGATGGCCGTCTCCTCTCTGATGGAGAAACTCCTGGCTCTGCAGCTGCAACAGATCCACCAGTTGCAGCTGATGGATCAGATTTGTCACCAGGTCTTACTGTTTGCCTCCCAGAGGTCAGAGGAATCAGAGTCTCCAACACAGACACCCATCAGCTGCCCTCAGGGTAGTCTAGCATCAACGCAGGCCAGCCAGCTGACAACCCTCAGTTCTCATCTATCCCAGCAGCTAGCTGCAGCCACTGGGTTAGCCCACAGTCTCGCCACTCAGTCTGCCAGCATCAGTCACTTTAAACGATTAACAGCAACAGTACAGTTACCACAGAGCCCCCTTGGTAGCAGCATTGTGCACTCTAGCACCGAACCCTTACAAAGCATGGGTAAACTCATAGCTTCAGCAGTAAGCAAGCCCCACTCTAGAAAGAAGTACACTCATGCTAAAGGTCTGTACCCTCAACTAAATGTTTCAGCCCATACCAAAATGAACTCACCAGCACTTGGCACAGGTATCTTGCTAAACCCATCGAATAAACCATGTCTAACTCAGCCACCATCCAGCAATCAAACACTCTTGAGTGCTGGACCAAGCATTGGTGCAATTGTGGAGGATCTGAATTCTTTGACGGCATTAGCCCAACAAAGGAAAGACAAACCAACCAATGTGACTTCTTTAGAACGCAAAATGTCTTCTGAACGGGCTTACTTTAAACACAAATGCAGGTTTTGCGCTAAGGTATTTGGGAGTGACAGTGCCATGCAGATCCATTTGCGATCCCACACTGGGGAGAGGCCATACAAGTGCAACATCTGCGGGAATCGTTTCTCCACCCGTGGGAACTTGAAGGTACACTTCCAGCGGCACAAAGAGAGGTACCCTCACATCCAGATGAACCCTTACCCTGTTCCAGAACACCTTGACAATATCCCAACCAGCACAGGAATCCCTTATGGTATGTCTATGCCACCACAAAAACCAGTTACATGCTGGCTGGAGAGTAAATCATCTCTAGCCACCTTGACTACTTCTGTTGGCCGGTTGCTCCCAACTGTATCACCCAACTTACCTTTTCTTATCAAGAAAGAGGAGCAGCCTGTCTCAATAACCACGCTTTCCAGTCCAGGCGTATGTGAATCATCTAGTGTGGTAAAGTCTACCAAGTGTGTTGACCTTGTAGAGCCTGGAAAAGTCCCCACCGTCCCCACCTTGAATCTAAAAAGAGAAGAGGTTAAACCCCCTTTGACCTTTGTCTCAAAGATGAGTTCGAGAAAAGAAGGATCAGCTGACTATATATCCGCTAACATCACTTCCATTAGCACAAATCCCATCAAGTTGGAGCAGTTCAAGATCAAACATCTCTTCGGAGGAGGAGTCCATGATCCCCTGCAGACATCAGAGACCTCAAAACTCCAGCAGCTAGTGGAGAACATTGACAAGAAGATTACGGACCTCAACGAGTGCATCATTTGCCACCGCATACTTAGTTGCCAGAGCGCCCTCAGGATGCACTACCGCACCCACACAGGAGAGCGGCCCTTCAGATGTAAAGTGTGCGGACGGGCGTTCTCTACCAAAGGGAATCTGAAGACGCACCATGCAGTTCATCGTGCCACGCCGCCAGTGAGGGTCCAGCACTCCTGTCCCATATGCCAGAGGAAGTTCACCAACGCTGTTGTCCTACAGCAGCATATTCATATGCACATGGGTGGCCAGATTCCCAACACCCCTCTCTCTGAACAGAGCTACCCAAAGTCAATGGAGTCTGGCAGAGGTTCAGTGGATGAAAGGAAATTAGAAGAGTTAGAGAACCTTTCTGATGATGATATGGACTTCAATGACTGTGGGATTGCAGGTATGTCCAGGTTTATTAACTCCTTATCTGGCAGCTTGTCTCCTTCTGATAGTACAGGAGCAGGCTCCTTTGATGCCCGGAAGAAACTCAACTATCTTAGGCCAGTGGATGAGATGCAGGTCAGCTGGTTTAAGACAAAGGGACTGGCTAAAGAGGATCAATATGCCTGTGACTCATCATCTCTTTGCAGTGACCGAAGTGATGGGAGACTTGCTGTTTCTGAGAATACAGCTGCAAAGCACTTTTTTTCCCCAAGCGAGAGTGTTCCAGTATGTTCTAGCCCCACAAGCTGTGAGGAAAGGTACCAGAATGGTTTATCCCAGGCACATATCAATCCAAGCCCTCTGCAATTCACTGACACTGGCATGGCATCTCTTCACCACCTAAAATCTTTAAACCCACTAACGAATCCCACTAATATGGTCCACACATTCTGTGAACAACGAGGCATTTTTAAGAACACTGCATGCAATATTTGCAGCAAGACATTTGCCTGCCAAAGTGCCTTGGATATCCATTATCGAAGCCATACCAAGGAGAGACCCTTCATTTGCACAGGGTGCAACAGAGGGTTCTCCACTAAGGGGAACCTCAAGCAGCACATGCTAACCCATCAGATGAGGGACCTGCCATCCCAGTTGTTTGAGCCCTCCATTCCCAGCCTTGCTTCCAGCCCCAATTCCTCTGCAAATCCTCTGGCCTCCCAAATGATTAAGCCAGAAGTTAACCGTTTCCTGGGTAGCGTCCCCTATGGGGAAACAAGTGATCTTCAAGGCATTTTGAGTTTGAGGATGTCCTCAGCCTCCTCTTCCCCAGCGCTCGCTGCCCTGCCACCTCAACGAACTCCCAAGCAGCATTACTGCCACACTTGTGGGAAAACCTTCTCTTCCTCCAGCGCCTTGCAAATCCACGAGAGGACTCACACTGGGGAGAAGCCGTTCGCTTGCACTGTTTGTGGTCGGGCATTCACCACCAAAGGAAATCTGAAGGTCCATATGGGAACTCATATGTGGAGTAGTGCCCCCACCAGGCGAGGACGCAGACTGTCTGTGGACGGACCATTGATGTTTATGGGAACCCATCCTGTGAAGCTATCAGAGCCAATTCAGAGGCCAGACATTAGGTCCGGTAATGGAGACTCCTTTAGTCTCTGGAACCACTGTACAGACTCCTTCTCTAAGAATTTGGCCTTGAGGACCAATGATATCTCAGTCATCCAGAACGGAGGCGGGCCTTACCTCTCTGGACCAATGGGGCATGGGGCCAGCTCACCTAAAGGGAGTGTAAATGTTGGTCTAGACAAATTTCCCAATACAGAACACAATGCTTCTTTGACGCTGCCTGGGGAAAATGATACAGAAAGAGCGACTTACTTCCGTTTCACTCatttgatggaggagaggaaggaaatgaTTGCCAATTAAAGAGACTGTGTATTATTTTAGGGAGAGGGAAGGCTGCTGTTGTTGATGGACTAGAGCTTTCTTTTTTTGAAGGAAATTAACTGCGATGTTGGAATAGACTGAGTTTCTTTGAGTTTGTGTAGAAATGATAATAACCTTATTTGGAGTCAAGTGTCTAGTAAAGTTTCCCTGCTTTTCAGTGTGCTTATTAGAGTTTGACTGTTTTTTATGACCTATTTACATGGGTAAAATAGCCTATTGGTTGTGTAATTATGCTTAATGTTACAGTTTTATAATTCTAATAGAATTTTGAGGTGTTGATTATGTTATTGAAGAGGAATTCACTTGTAACATACTTTGTCATATCTTTGTGAAACACATGGATATATAATTGATGTGTCAATATCAATGTACTAATATACTTTATACattgggtgggtctaatcctgaatgctgattggttaaaaccgtatTCCagacggtgtctattccacaagttaccactggctaaatctatgatgttaaaat

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58845 lncRNA downstream 1152 48042042 ~ 48042340 (-) True G52691
TU58844 lncRNA downstream 1625 48041632 ~ 48041867 (-) True G52690
TU58828 lncRNA downstream 11862 48025314 ~ 48031630 (-) True G52674
TU58781 lncRNA downstream 77704 47965391 ~ 47965788 (-) True G52630
TU58127 lncRNA downstream 117540 47925334 ~ 47925952 (-) True G52033
TU58849 lncRNA upstream 1 48049197 ~ 48054185 (-) True G52694
TU58889 lncRNA upstream 81626 48130822 ~ 48131055 (-) True G52734
TU58891 lncRNA upstream 84218 48133414 ~ 48133658 (-) True G52736
TU58893 lncRNA upstream 86054 48135250 ~ 48135508 (-) True G52738
TU58897 lncRNA upstream 89067 48138263 ~ 48138580 (-) True G52742
XM_021603570.2 mRNA downstream 255199 47785638 ~ 47788293 (-) True LOC110524174
LOC110532355 mRNA downstream 309953 47725613 ~ 47733539 (-) True LOC110532355
XM_021603531.2 mRNA downstream 321092 47695182 ~ 47722400 (-) True LOC110524148
XM_021603540.2 mRNA downstream 326987 47695182 ~ 47716505 (-) False LOC110524148
XM_021603497.2 mRNA downstream 354426 47633880 ~ 47689066 (-) False LOC110524125
XM_021603662.2 mRNA upstream 22633 48071829 ~ 48123356 (-) True LOC110524212
XM_021603717.2 mRNA upstream 170244 48219440 ~ 48247045 (-) False LOC110524242
XM_021603707.2 mRNA upstream 170244 48219440 ~ 48247048 (-) False LOC110524242
XM_021603724.2 mRNA upstream 170244 48219440 ~ 48247048 (-) True LOC110524242
XM_021603755.2 mRNA upstream 242430 48291626 ~ 48304829 (-) False LOC110524264
TU57798 other downstream 482283 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 664949 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 753811 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 924459 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 2093541 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 244912 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 934989 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2362438 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2716167 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2728551 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile