RNA id: XM_021603662.2


Basic Information

Item Value
RNA id XM_021603662.2
length 4729
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110524212
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48071829 ~ 48123356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCAGTCTACTGTCCCGAGAGTGGAGTTTGCGCAATGTTATCAGCTCCGCCATTGACGGAGTCGCTGGAGAAAATTGCACATAGCCTGTCGCGTTTGTTCTTAGTAAGTATTCGACGTCTAGATCATGTATTCTCACAACTGAATTTAGTGTCGTTAATACATACGGTTGTTTACATCTACATGATTGGATTTGCATAAACTGTACGGCAGAAGTTGTCAAGCCTCCTGCATCGTTAGCTAGCTTACGCACACCTAGCCAGCAGCGAGCGTGTCGTGCACGGCTGCGTCGCCCGTGTGCTCCACTCCATGGATCCAAGAATCGCCTGGTTCCAGCCAGAACAGCTCGGCCCTGCCAATAGCGCGTGGATGAATATTTGGGAAACGACACAAGGTCTGGGCAATTTGAGTTTGAGTAATCATAACAACCACGGCTCTGCTGTGTGGAACACGCCCACCACCAAGACGAGCCCTAGTACAACGGTATCCGTGAACTGGGGCACGGGCAACGTGATTCAGAACGGAGTCCCCGACGCTGTCACGAGCAGCAGTGAGACGAGGATGCAAGGGACGATCAATCCAAAAGGCGATAATGAAATAGAACATAAATTCGACCTATTGGAAGCAAATATCAACCAGCATCCTGCGGGGAGGGGTAGTAGTGGACCTTGGGTAGTGGGTGGCACTGCGTTCGGTAGCCTCAGAGAAAGAGAATGTGGACTTGGGAACAGACGGAGAAGAGACAACCGAGCGAGCACTTTCGGATTTAACCGCAGTTTATTGAGTATTGGCAGTAACTCTGCAGTGGACGACGCTGGGTGCCATGGAGTTGGTTACACAGGCACGCCTTGGAAAACCAGGAACTACTCTGCAGGGATTTTGGGGCTCCATGAGGAGATCCAGGATTTCTATGCCTACATGTCTCCACGgccggaggaggagaggatgaggagggaggtggtggagaggATAGAGCGGGTTATTAAGGACCTTTGGCCCACTGCTGACGTTCAGGTATTTGGgagtttcagcacaggtctctaTCTACCTACCAGTGACATTGACCTGGTGGTGTTTGGGAAGTTCAGGGAAGGAGACAGCCTCCCACTGTGGAGGTTAGAGGAGGCCCTGAGGAAACACAAAGTGGTGGAGGAGAATTCTGTCAAAGTGCTGGACAAGGCCACGGTGCCAATCATCAAACTGACAGACTCTCTCACGGAGGTCAAAGTTGACATCAGTTTCAACATGAAGAATGCTGTCAAAGCTGCTGCCCTCATTAAAGATTATAAAAAGAAATATCCTGTGCTTCCATACCTGGTGCTAGTCCTGAAACAGTTCTTATTACAAAGAGACATGAATGAAGTGTTTACAGGAGGAATCAGCTCCTACTGCCTCTTCCTCATCGCTGTCAGCTTCTTACAGctccATAGCAGAGAGGACGCCTGCAGTCCCAACGCCAACACTGGCGTCCTGCTCATAGAGTTCTTTGAGCTGTACGGCCGCCATTTTAACTACCTGAAGACGGGGATCCGGATCAAAGACGGGGGGTGCTACCTCTCCAAAGACGAGGTCCAGAAGAGCATGCTGGATGGATACAGGCCATCCCTGCTCTACATCGAGGATCCACTGCAGCCAGGTAATGATGTGGGCCGTAGCTCGTACGGGGCCATGCAGGTGAAGCAGGTGTTTGACTATGCCTACATGGTGCTGAGCCACGCTGTGTCGCCCATCGCCAAGTACTACCCCAACAACCACAGCGAGAGTATACTGGGCAGAATAATCCGGGTGACTCAGGAAGTGGCAGAATACAGGGACTGGATCACCATGAAGTGGGCTGATCTATCACTGAACTCCCTGACCTTAAACGGAAATGATGTCACGTTGCTGGTGGAGCCTCAGCAGGAGTACGAATGCAACAACAATCTCTCTGAGGAAGGGGCGGAATCACcaagctcctcctctcctcctccttcctctccatcctcctcttcatcatcctcctcGCCGCAGTCTTCATCAGCTAGCTCCAGCGACGCTGATTCGGACGGAAGCCCCTGTAAAACGGTGTTGCCGCGTGGCAGGCGGGGCTTATCCGCACACAGAGCTGCTCCCCTAGGATTGACCAATCACAGGGCTACAAGTTCCTCTTCCGGAAGCCATGTGAGCCACTCGAACAAGAGCAAGGTGGACAGAGAAAGTTTGACGTCTCGTCAGAACAGCCATGCCAACACACAGCCAAGCACAGAAACAGGACAGTCGTCATGCAGGAACCACCAAGGCAGCAGGCGGAGCTGTACGGGCAGGAGGAAGAAGCCTCAGCACCAACGCAAACCTGCGCCTGCGGTGGAGGACCTCTGTAGATAGGATGCGCCATGTCACAGAACTCAACTCCACTCTCTGCCGCCGAAACAAAGGCCATCGTGTTACTCTTACCAGGGCTTTTGGTCGTGATATTTTTAAAGCCAAGTTGGAAGGAGATTTCTCCTTTTTCTGTTAGTTGAATGGGCAGATTGACGCTATCCTCGTCTTGAGGGCATAGTCTTTCTGTAATTTGAACACACTGCCCATTGGAGGAAGGTTGTCGAGCCTGAACAGTTGTTCCTGTACTTTATGAAGTGGCAATACACCCTGGTGCATTGGTTGGGTCTATACTGGCAGTTAAACTTTACAGCATAAATGACAAGGGAAAATGTATGGTATAAAACTATGGATATTATTGCTATATTGGGCAAAATGCTTGCACTGACAACACGAGTTGTTGAAAATGTACGTATTTCAGCAACTCATCTACATTTGCAATGGAAAAAGTAGAgcaaaatgttatttaaaaaggCGAAATGGAGGTTAGAGTGagacagaaaaaaaaaaacaatggatAGGGATTGTATATTTTTCACCAGCTGAATTAAAATGAATATCGATTTGCCATCTCTCCTGGACTGGTCCAAGTGTGGGTTCTAAGTGCCAACTCCAACCATCAGCAAAATAGATTACTACAGTACCATGTATGAGAGCACAAGATCACGAAAGGATCAGGCCAAGGGATCAGCCCAAATGGACCAGTTTCCGTGCATAAAGGGGATGATTTTTGTAATGATCTGTTCAATGGCTATTTCACAATACTGTTTAATCACCGTAATATCTTACAGTCTAATGTACCTACTGGTAGAATACAAAATGCCACAATATCTGCAATTTGCAAACTTCCTGTACATGAAAACATCAGTACTCCACTATTTTGCCTATTTACAAAATGATTTGTATttgtttatgtatttatttttttagtatATTTATATGAATCTATAAATGTTACGCCCTGTGGATGGAAAGGTTAGGAATAGCCTGTATGCGTGTGTAAGAGAGGGTTCAGATGCACATTTTGTGCCGACTATCTCAGACGCCTCGGTTCTAAAAGTCTTACACCCCAGAATGGTTTTGGAAATGGTGTCTAACACTTTGCTTTTACGTATCCGGTGCTTTCAGGCCACTGATTGAAAGTCATTGGCTTTGTTCAATTTCTGTCTCTAGCCCTTTTCTCTAGCTCTTACTTCTTCCTTGTCTGGCTTTTATACAAAAGGATTGGACTGGATGTCAACAATATGGTGATAGTTCCTCCGAGCCTTTAACGAGGGTGAGTTCCTCCAAGCCTTTACCGAGGGTGAGTGCAGCTTCTTCCCAAGTCACTTTCACCCATCTAATCCTTTCAGATCCGCCTAAAGAATATAGGCCCAACTTTGACAGTGCAAATAAATTGTGCTACTGTTAATTGAGAACATTATACACCTTACACACTGCATTCATTTTAAAAGTTAGATAAAGTTTCAAcaagagcactacttttgacgttATCAGAAtggcaggttgacgtttattgggaCGAATCTCGTCTTGGAAGCAGAGCGATTTctgataaggttagcagtgtggttgggggttagggttcaAATCAGATGTTgactgtggctgtgccagctagtgactagCCTGCAGTGGCCTCCAGTACATGAGTCATCCCAATGAATTCCAGCATCAAAATGTCACTAAGGGTTGGGCCACTGTTAGTCCTagcattttcttcttttttttttcaaaaattggtcctcacaaaacattttgtgtgcAGTCTAGACATTTGTTCCAACCTTCAAGATAGCTCATTGTTTTACAAGTGATAATATATTGTAAAATAAATGCATATTTCCCATTGCCTGTTCTTTATTATATGTGATTAGAATATAACAAAATTCATTGATtaaggaatgttttttttcttcctgttTTGTCTTTCACGGCAAATGTGTTCATGTGTTCACTGCCCAATCATTTCAACATTGAATTGGTTTTTCAAGCAGACGAGCCACCATCAAACATCCTAGAAGTCAACAAGATGATTGTTTACATTCAGTATGCCATTGTCAATTCAATACCAGTCAACATTTCTCTCCGCGTTCCAACCATGAATGAATTTGAAGATGGGAAAAGGGTTTTATTGCTGTGAACAGTAAAGCTGTTTTGTTGAATGGTAATTTTCCTTATCTTTTCTTAGCGTTGTCTACAGCAAGTGTACAATCCCTGCATTGAAGTTGTATTTTCATATGATTGATATTATTTAGCTAATTATATTTTTGTGGAAGATGAATAGATATAAATGTCAAGAACCCTGAGGGTAAAAGTGGCAAGTGGGAAAATGTAAGTCTCTCATTATTAAAATAAACTTTTGAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58849 lncRNA downstream 17644 48049197 ~ 48054185 (-) True G52694
TU58845 lncRNA downstream 29489 48042042 ~ 48042340 (-) True G52691
TU58844 lncRNA downstream 29962 48041632 ~ 48041867 (-) True G52690
TU58828 lncRNA downstream 40199 48025314 ~ 48031630 (-) True G52674
TU58781 lncRNA downstream 106041 47965391 ~ 47965788 (-) True G52630
TU58889 lncRNA upstream 7466 48130822 ~ 48131055 (-) True G52734
TU58891 lncRNA upstream 10058 48133414 ~ 48133658 (-) True G52736
TU58893 lncRNA upstream 11894 48135250 ~ 48135508 (-) True G52738
TU58897 lncRNA upstream 14907 48138263 ~ 48138580 (-) True G52742
TU58898 lncRNA upstream 18352 48141708 ~ 48159977 (-) True G52743
XM_021603649.2 mRNA downstream 22633 48043492 ~ 48049196 (-) True LOC110524205
XM_021603570.2 mRNA downstream 283536 47785638 ~ 47788293 (-) True LOC110524174
LOC110532355 mRNA downstream 338290 47725613 ~ 47733539 (-) True LOC110532355
XM_021603531.2 mRNA downstream 349429 47695182 ~ 47722400 (-) True LOC110524148
XM_021603540.2 mRNA downstream 355324 47695182 ~ 47716505 (-) False LOC110524148
XM_021603717.2 mRNA upstream 96084 48219440 ~ 48247045 (-) False LOC110524242
XM_021603707.2 mRNA upstream 96084 48219440 ~ 48247048 (-) False LOC110524242
XM_021603724.2 mRNA upstream 96084 48219440 ~ 48247048 (-) True LOC110524242
XM_021603755.2 mRNA upstream 168270 48291626 ~ 48304829 (-) False LOC110524264
XM_036979153.1 mRNA upstream 190309 48313665 ~ 48321369 (-) False LOC110524273
TU57798 other downstream 510620 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 693286 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 782148 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 952796 47064774 ~ 47119033 (-) False G51214
TU55801 other downstream 2121878 45948958 ~ 45949951 (-) True G49962
TU59011 other upstream 170752 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 860829 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2288278 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2642007 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2654391 50777747 ~ 50783844 (-) False LOC110524514

Expression Profile