RNA id: XM_036979108.1


Basic Information

Item Value
RNA id XM_036979108.1
length 1129
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC118964788
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48147399 ~ 48163741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactggacattggcgagaaATACTCCACAGAAACATTCAAACATGAATGGATCGATACTTCCAATCTGCCTGGCtctatgtctggctggctgggctgTATCTGGCACTTCTATTGAAGCTCAGAAGACCTCCTCTGTCTGTTACCTCTGTAACGATACTCAATGCCAAAATATTGAGTCTGTTTATGACCATTTGACGACTAATTCGACCCTGTGGTCACGAGGTGAAGTGGCTAAGCTGCCTCCCTGTCCCACAACCTCCCCTCCACCATCTGGAAAATGCTTGTTGTGTGTTAAGAGCCAGGAGGTCTACGCTGTGTGTGACTCAAAGATCATCAAGCCAGCCTTTGAGGGCCAAGGCAGCTCCATGCCTGTCATCGAAGCCAATTGTCCCAGCATTGTTTCAACTGATCAGACGGACGGAGCTGGAGGTTCAGCTTGGAGTCCTGatctATTTGCCCCCACAATGACCCCTGAGGGCACTGGCAGGTTATCCAAGGAAACAAGAATCACTATTGTGTCAATCCTATTTGCCTTCTCCGTCATCTTCATACTCATTGTTGTTTTGCGCAGAAGAACCAGATGAAGTGTTGTCTGGTGTCCACATCAGATGTCCACTTCAGAAGTCCACTCAGAGCAGCACCAGACCCAGTTAAAGTTATTAAAGAGAAAGGTTGATATTGTGTAAGACAAGGATAAGAGGAAGTGATGGACCTGAATGTTGTCTACTTCCTGGCTATGGTTTAACTTGAGGAAACAGTAAGCTCTGTTAGAAAGGTTGTTACATTTTGATAGCTTTTACTCTGCACTTTTGCAGCAGGGTACATGAGTGTCTTGGGATTCCTAGGGCCTGGAAGTAAAGTCAGGGAGAGATCTCAGTGCCAGACCTACAGAGGGTCCTGCCATTTTAAACCACATACTTTTTGATTCGCCAAGTTTGCGTGTTTTGCACGTCTATATGGTTGATTGAAACATATGGAATTAATAATTACGTTTTATTTATATTAATGtatttttattatgtttttaCTATTGATAGTGTTTACAAGGTACTGTAATTGCAAGTGCTTCTCATCGTATGTGCGCTTCCCTTGTCTAATGTCAGAATAAACAACACCAAAGAACTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58279 lncRNA upstream 20043 48138363 ~ 48138596 (+) True G52174
TU58274 lncRNA upstream 25174 48133265 ~ 48133465 (+) True G52169
TU58206 lncRNA upstream 103289 48055129 ~ 48055350 (+) True G52107
TU58201 lncRNA upstream 112899 48045503 ~ 48045740 (+) True G52102
TU58200 lncRNA upstream 113667 48044757 ~ 48044972 (+) True G52101
TU58294 lncRNA downstream 2873 48166614 ~ 48167114 (+) True G52187
TU58251 lncRNA downstream 9423 48173164 ~ 48187068 (+) True G52148
TU58306 lncRNA downstream 18943 48182684 ~ 48187583 (+) False G52199
TU58307 lncRNA downstream 18943 48182684 ~ 48187583 (+) True G52199
TU58309 lncRNA downstream 19843 48183584 ~ 48188396 (+) True G52200
XM_021603625.2 mRNA upstream 145293 47983046 ~ 48013346 (+) False LOC110524199
XM_021603636.2 mRNA upstream 145293 47983046 ~ 48013346 (+) False LOC110524199
XM_036979097.1 mRNA upstream 145293 47983046 ~ 48013346 (+) True LOC110524199
XM_021603604.2 mRNA upstream 180334 47949736 ~ 47978305 (+) False rpgrip1l
XM_036979133.1 mRNA downstream 93126 48256867 ~ 48289561 (+) False LOC110524253
XM_036979138.1 mRNA downstream 93126 48256867 ~ 48289561 (+) True LOC110524253
XM_036979164.1 mRNA downstream 320144 48483885 ~ 48509644 (+) False LOC110524291
XM_036979160.1 mRNA downstream 320145 48483886 ~ 48509644 (+) False LOC110524291
XM_036979176.1 mRNA downstream 388340 48552081 ~ 48590914 (+) True LOC110524302
TU58177 other upstream 133681 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 899741 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1297175 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2165748 45992273 ~ 45992891 (+) False G50010
TU58443 other downstream 216801 48380542 ~ 48383257 (+) True G52324
TU59387 other downstream 729756 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1873833 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 3286081 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5502474 53666215 ~ 53671273 (+) True LOC118936380

Expression Profile