RNA id: XM_021603766.2


Basic Information

Item Value
RNA id XM_021603766.2
length 2656
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110524273
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48313665 ~ 48396381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCTTGTAGTCTACTTCTCTCACCCTCGAGCTACTCTGCAGCCCTCACTAGCACTAATAATTGATTTCAGCAGACACAACCAAAAAGGTGACTGAGTTACTGGAAGGTATGGCGAGAAGCAATGAGGTACATTTGGTGAAAATGGTATTTGCAAACATATGCGAAATCTGAGTTTTCAGTCGTGATGCTAAATCAACAACCTCGAGCGGGAGGAAATTGACTCTACAGACACGCGCGAGCTCTTCTCAGCGTCCAAGCCTGATGGTGATTGCAACCGAGGTTCCCGTGGCAGGGCCGAGGCTGAGCAGGTATGCTCTTGGGGGAGTGTAGATGTACCAGTAGGCTACTGGAGGCTCTGTGTGGCAGGAGGAGGGTGAGGGTGTCGATCATGAAGCTTCCCTGCTCCTTCTACTGCTCCCTCTGGTTCCTCCTGCTCTTGGGGGCCGGGTCTTTACTCCTCCTCGTACACCTCCAGGACCTCTCAGACATGCTCCAACAGCAGACCCCAGgtGCAAAGTTGATGGTTGCGCCAAGGTGGCCAATTCCAAAGGAGCAGTCCTTTGACAGTGCAGTCGTTATAGGCATCAACCTGGGTGGAGGTTTCCATGGAGCACCAGGGGTAGAGATGTCCTCTAACCCCAGCCTCCCTACTCCTAGCCCCAGACAACCTCCAGCCTTCCAGTGGCTGCCCCACCCAGCCACCCCAATCTCTGGGGACCAGCAGGCCGAGAGCACCGGGCAACCCCTCACCAAACGCCACAGGAAGCTGCTGTTAAAGAGCGGGCCTGTAACCCCTAGTGGTGCCCGCTCTGGTGAAGAGGACAGTCGGCTACAGGGCCTGGCGCAAACCCAGGCGTCCCGTCGCCGCCTGCTCAGGGAGGTCTGTGCCAAATACCAGCCGGGTGTCACGGAGCGCCCTGTGTCCCGCCGGCAGGTGTCCCGCGTCTACGTGGAGGACAGGTCAGGCCTGCTGTACTGTGAGGTGCCCAAAGCCGGCTGCTCCAACTGGAAACGGGTGCTGATGGTCCTGGGCGGCAGCGCCACCTCCACGCACATCATCGCCCACGACGACGCCCACTACGCCAACCAGCTCCGCCGACTGGATGCCTTCGACCAGGCGGGCGTTGCCGAGCGCCTCCGTTCCTACACCAAGGTCCTCTTCGTACGGGAGCCCTTCGAGAGGCTGGTTTCGGCCTTCCGCGACAAGTTTGAGAGCCCCAACTCGTACTACCACCCGGTGTTCGGCCGGCCCATCATCTCCCGGTACCGGGCCAACGCCTCACGCTCCGCCCTGAGGACCGGCGCCGGGGTCACCTTCAGAGAGTTTGTCCAGTACCTGTTGGATGTGAGGCGGCCCGTGGGCATGGACATCCACTGGGAGCCGGTCAGCCAGCTTTGCAGCCCCTGCCTGCTACGCAATGACTTCATCGGGAAGTTCGAGAACCTGAAGGAGGAGGCCAACTTCCTGCTACGGAGCATCGGGGCACCTAGAAACCTGACTTTCCCTGACTTTAAAGACAGGAACCCAAAGGCAGAAAGGacttcctcctccatcacccagaGATACTTTGAACAATTGAACTCCACAGAAAGACAGAGGGCCTATGACTTTTATTACATGGATTATCTGATGTTTAACTACCCCAAGCCCTTTAAAGACCTGTACTGAGGTACTGGCTGGATTGCCCGGGTGAGGTTATTAATATGAACACTACGGAAGAGATTATTATCCTGTGGGACTTGAATAAGCACTACAGGCACATTCATGTTAAATATTATTTTTACAGGTCTAATTTAGAAATGGCTAAAACAATGATTTAATGTAATTACTTTGGACATAGGTTGTAGGCCTACAGCTTTTTTGTCATAAAGCTTTGTATAGTGTGTCAAATGCATTTGCATTGATTGGCAGACCAGTGACTTCTATGAAGTGACCTGTACTTTGTGTAAAGAATGAGTGatctgttattgttattgtttttcAGCCTTGTTACGTGAAGGTATACTTTTTGGTCCTCTTCAATAATGTGTATTCTTATTCTGCAGCCTAAGTTGaaaagaagggaaagagagaggctagATATACTCTCCCAGAGCAAAGGCTAGTGTTTGCAGATACTGTAACGGATTTCATAGCTACTGCTTACTGATGAGAAATCAAATTGAATATAATTCAATTTGATTTCAAAACCACCCTTgcttttatttcatttttatttacctaggcaagtatATATATCAACGCAGGTTTCTTAAACTATGGGTCGGGACCCAAGGTGGGCCTTGGGAATGTGAGATATGGGTCGCGAGTTGAGAGAATACATCTATAAATCACAcactatttcttcttaatttgggTCACGGGAGGACAGTCAATTTATAATTTGGGTCTCGAGCTGAAAATGTTTAAGAATCTGTGAATAGAGGAGGAAATAGTGGCATTACTATATAGTATGTTGGTTCATTGCATATAGCTTTCCAGATGTATCGGAGGTTAAATTATCTTTGAATCTGTTGGCAATTTATATTGAAACATATGATTTTGTTTTTGGataattacagtaccagtcaaacatttggacacctactcattcaaatatattttagattcctcctttcttgtggcggtcctcatgcgctgatggtttttgcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58936 lncRNA downstream 126385 48182899 ~ 48187280 (-) True G52774
TU58924 lncRNA downstream 146125 48167288 ~ 48167540 (-) True G52765
TU58898 lncRNA downstream 153688 48141708 ~ 48159977 (-) True G52743
TU58897 lncRNA downstream 175085 48138263 ~ 48138580 (-) True G52742
TU58893 lncRNA downstream 178157 48135250 ~ 48135508 (-) True G52738
TU59094 lncRNA upstream 15127 48411508 ~ 48464040 (-) True G52922
TU59121 lncRNA upstream 52049 48448430 ~ 48468499 (-) True G52948
TU59132 lncRNA upstream 72787 48469168 ~ 48510478 (-) True G52956
TU59152 lncRNA upstream 99243 48495624 ~ 48499627 (-) False G52973
TU59150 lncRNA upstream 100004 48496385 ~ 48499627 (-) False G52973
XM_021603755.2 mRNA downstream 8836 48291626 ~ 48304829 (-) False LOC110524264
XM_021603707.2 mRNA downstream 66617 48219440 ~ 48247048 (-) False LOC110524242
XM_021603724.2 mRNA downstream 66617 48219440 ~ 48247048 (-) True LOC110524242
XM_021603717.2 mRNA downstream 66620 48219440 ~ 48247045 (-) False LOC110524242
XM_021603662.2 mRNA downstream 190309 48071829 ~ 48123356 (-) True LOC110524212
XM_021603794.2 mRNA upstream 43866 48440247 ~ 48463655 (-) True LOC110524285
XM_036979184.1 mRNA upstream 201797 48598178 ~ 48623414 (-) False nup160
XM_036979191.1 mRNA upstream 201797 48598178 ~ 48623416 (-) True nup160
XM_036979278.1 mRNA upstream 310601 48706982 ~ 48747738 (-) False LOC110532369
XM_036979287.1 mRNA upstream 310601 48706982 ~ 48748537 (-) True LOC110532369
TU59011 other downstream 9529 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 752456 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 935122 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1023984 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 1194632 47064774 ~ 47119033 (-) False G51214
TU59630 other upstream 587804 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 2015253 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2368982 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2381366 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 2381366 50777747 ~ 50792069 (-) False LOC110524514

Expression Profile