RNA id: XM_036979164.1


Basic Information

Item Value
RNA id XM_036979164.1
length 6747
RNA type mRNA
GC content 0.55
exon number 35
gene id LOC110524291
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48483885 ~ 48510535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgttttatttatttactcttTCAAGCATAGAATAAGGGagttatactccagtctagtaggtggcggtaatgcaacatttattggatgccaaccgcggttaaacctcatcgaagaagAAGAAGTCCGCATACGTGCCTTTGGAGCTCCACCCAAGCGAGGCATTTGACGTGTTGCATAGCGTCACAAATTTACATCGGCCCCCCCTCAACTTCTGCGGTGGAACTTCCCCAGGCTTCAAGCAGAAGAAGGGAGAGAAACAGCGTAGTTAGCGTTAGATTCTTTAACGTTGGCGTAACAACACAATCATACATCCAAGTTTGTAATTGCAAACATATGTTGTACGTTTAAGTACTAGTCTAACTAAGGTAATACCTCATTACTCTACAACATGGATTCAAAGTCAAGCAATCGGACGGACGAAGGGGAGCTGGAAGACGGGGAGATCTGCGATGATGACACCGACGAAAAGGTGCTTATACAGCAGGATACAATGAGGCCTAGTAGTACGAACAACTCATCACGAAATACACGGAAATCGAAACCATCGGCGCGAAGTTTACCACCTCTTATGGGTAGCCAGCCTACAGATTTTCGACTCTTAATGCCATACAACCGCGGACCTCATTCGCACAGTCCCTTCCCCCCGAACCACAGACCGCAAAGCGGTCCCGATCGGCCGCCGCCACTGGGGCCTCACTGTGACCAGAGCCCACGTTCCAGCTTCTGGGAACGAAGTCACACAGCCCTGGGTCGATTTAGGCACCGGTGGAAACCAGAAGATGACGGTCGCGGGGATTGGGGACGAGGAGGCTGGGGAGACGgatgtggtggagggagagagactggttgGGTTCCCCCCGGTCGTTATGGGCCCGGAGAGAATCACAGTAACAAGAAAGAATCTCCCTCGAGAAACAAACAGAAGGTAATGATGGGGAGGAATCAGGTAAGAAACAAGCAGATGATGCACCACAACGCTGCCAAAACCGAGAATGGTGTCAACGAGAGCTTTGAGGATCTGCTCACCAAGTACAAACAGATTCAGCTGGAGCTGGAATGTATTAGAAAAGAAGAGAACATGGTTCTGAAGCCCGAAGAAGACCTGCCGGCTCTGAACGAGCCTGAGGTTTCTGCCAGTACTCCCCAGAACGGGCCGTTACCCGACACTAACAGTATTCCCGATGACAGCGCGGCGGAGGAGAAGAAGGTATTTCAGGCATTCAACCTCAAACCTCTACGACAGAAACTCCTCACTCCGGCAGAGATTGATGCGCTCAAAACTAAAACGGAAAAGaaagatccagagaaagaggacGGTGACACGGAGAGCGAAAGAGGTCCAGTTGAACCAGTTGCTACCCCGTTTGCTATTCCCAAAGGAGAAGAGGAGAACAAGGCAGGGGAGAAGGACACGACAGCCTGTGTGTGCTGCCGCAGCAAATCTGAGGACCcgaaggaagagggggagacgAAGTATTCGAAAGTCGGTTGTGTGTGCTGCAGCGAATCATCAGAGGACTCCACTCCATCCCCTGTCAAGCCTAAAGTGAAGGGGAGCAATGAAGACGAGGAGCTGTCTGAGCTGCAGCTGCGTCTCTTGGCCTTGCAGTCAGCCAGCAGGAAGTGGCACCAGAAAGAACAGCAGGTAATGAATGCGAGCAAGGAAAAGATCACCAACgccaagccttcccaggagaaGATCCCCAACgccaagccttcccaggagaaGATCACCAACgccaagccttcccaggagaaGACATCCAGCTCTACATCCAGTGCATCCAACCCAGCTGAAAGAGGCAGAGTCACCACCAGGTCTGCCTCCTCTGCTGCCTCGGAGAAGGCCAAAGCTCTGGCCAACAAGCCCCATGAGAAGGCCAAGGCTGGGGCTAAGCCTCCAGTGGAGAAGAGCAAAGCTCCGGTCAAGGGCTATCCAGGGAGGAAGATGGTCAGCCCAGGCTCGGTGGCCAAGCAGGCGTTCCGGAAGCAGCAGTTGAGGACCTGGAAGCTCCAACAGCAGAGAGACCAGGACGAGCTGcggagacaggaagaggaggaacgccgcaggagggaggaagagatccGCAAGATCCGGGATCTGTCCAATCAGGACGAGCAGTACAACcgcttcatgaagctggttggggGCTCCAAGCCGCCACTGGCGCGCAATCCGAGCAagTCCAGAGACAGCGACCACACTAGGAAGTCTTCTGGTAAACAGGGATTGGACACCTCAGGGAACCTTTACCAGTATGACAACTACGATGAGGTTGCCATGGATACTGACACATCTTCTCCAGTACATGATCCATTCGAGGTCCAAGGATGTTTCACTCACATGCCCATGCCTTTCCCCATGGACTCCCCTCAATACAGAATTGATTTGGGTCAGCCGCGTTTCCTGTCCGTCATTCCGTCCGCGCCCCCTCCACCCTTACCCCCAATGCCCCCACCCCCAGATGAGCTAGAGCCGCCCCCCAAGCCGCCGTTCgcggatgaggaagaggaggaggagatgctgCTCAGAGAGACCTGCCTCATGTCCATGGCCAACAAGAAGGAGATTACCCTTGACAGCggccccccctctccctcccccctggtCAGTCTGGTTCAGCCGGTGCCCATGAGCAACCGGAGTGTGGTCAGCCTCAACACAGCACCCCAACCACGAAACAAGAAGTACAGCCGCGGGCATCACCACCCCAGGCTCCCACTGGTGCTCCCGCGGCACAAGGCGGTGGTAGTCCAGCTCAACGGTTCAGACGACAGTGACTCGGACATGGAGACCTGCGGCAGCTCTACACGGACACAGTTTGTCTTTGGAGGCCTGGAGTTCATGATTAAGGAGGCCCGCAGGTCTgcagagGCAGCAAAAGCCAAACCGACGTCAGGGTCTGAGGAGAACGAACCAGTCAGAACTCCGGAGGCTCTATCCGATGCCAAGAAGGCTGAGTATCGTCTGCTGAAAGGAGAAATAGCCAGTAGGGAGAAACAGAAGGTTCTGATGGACCACAGTCCCCGAGCTGTGTCCTCTCCTGCAGGCTCCGATCCCGATGTGGACTttgctgccaaggcagcggccAAGCTACAGCTGACCGAGGCAGAGACCAACCTGACCAAACACAGaaacctgctcctgaAGGACGACGGCATCCTGAGGCAGCTCTTGCAGCAGGAGCAGAAGAAGAAGGAGGCGTTGAAGGCAGCTGAGGCCAAGGTGGCCAAGCTCAAAGAACAGCTCCTGGCCTCGGAGAAGATTGTCAGTGCCAACAAGACCCTCCTCAACAGGCTCCAGGAACAGGTTCATCGTGTTCAGCTCCGCGTGTCAGTGAAGAAGAGCCACAGCTTGAAGCTGCAGAAAGAGATGGTCCAAGCCCAGGCCGCTGCAGGCAGAGAGCCAGGGGGTCAGAAACGACGCACGGACGTCAGCCACCCCTCGCCTGCGAAGCGTCTGCGGGTGGAAGTCTCTGTCGCCCCCCGCGGGACTGAGCGCCACTTCGCCGACCTCCTGGCCCAGAAGCAGCGTCTGCAGCTGCTCGAGTCGGAGTACGCCCTAAAGATCCAGAAGCTGAAGGAGGCCCAGGCCCTCCACAACCGAGGAGCCGTCCCCGAACCCCCGCCACCCCAGGCCACCTCCACCCCAATCCCCAGGGCTCGCCAGCCCAGTGCCCCTCCCACCAGCCCCTTCCCTTTGCCCCAGCCATCCCTACATGACCTCACCCAGGATAAACTCACCCTGGTCAGCAGTGAGGATATCACTGAGACTGAAGACGGCGACATGGAACCCGCCACTGCAGCAGTGCCCTCCGCCTCCACCCAGAGTGTTCGCAGGCGCTCTTTCAGAGAGACGGGCGCCTTCACCAAGCCTAAACTGGAGCCCGGTGGGACTGGACTGGTCAAGGATTGTCCAGCCAAGTCAGCCAAGGTGAAGGCCCCTGGGCCTGGGGAGCTGTTCTTAGGGCTGGAGGTGGAAGCCCTGCAGACGATGGACAAGCAGCAGGCCAACCTAGGAGAGCTGCTGCTCGGGGAACTACGGGCGCTAGGTGGCACTGTGGGGAAACCTCCAGCTGGGAAGGTGATAGAGGTGGATGTAGACATAATGGCTGCCCAGTCAAGCCGTGCTGAGCTGAAGCCTGTCCCGTTCGGACAATATCGCAGCCCTCTCCTGGTCTTCAAGTCTTACAGGTTCAGTCCGTACTTTCGGACCAAGGAGAAGTTATCACTCAGCTCTGTGTCTTACAGCAACGTTGTGGTGCCCAAAAAGTGTTTCTGCCGCTTCGACCTCACAGGCACATGCAATGACGATGACTGCAAGTGGCAGCATATGAGAAATTGCACTTTCGGTGGAAACCAGCTTTTCCATGATATCCTGTCGTACAACCTGGCCTTGATTGGCTGCTCGGAGAGCAGTACTACTGATGACATCAGTGTTGCCACAGAAAAGTATTTAAAAAAGCTCTTTGGGACAAACAAGGATCGCATGGGAATGGACCAGAAGGCCGTTCTACTGTTGAGCAAAGTGAATGAAAGCAAAAGACATGTCCCTCCCTTCACCACGTGTAAAGATCTCCGGAGGTGGAGGCCTCAGCCCGCTCGCCAGGCCAGCCCAAGCGCTGGGGACGACAGCGGGGACGAGTGTGCAGACGCCAACCTTGGTCCGGTCAAATACGACGGTTTTTCCAAGAGGAGTTTGTCTGCTgccatggatgtgtgtgtgaccccagacgacaagcgttactTCATTAGTGAGACTGACGACATATCTAACCTGGAGACCAGTGTCCTGGAGAGCCCCCGCGACGCACAGCTGTGGATCAAACTGGCCTTCAAATACCTCAGCCAGAAAGAGACCTCCGTGGTGGAGTGCCTGGATGCTGCGCTGAACACGCTGTCTCGTGCCCTGGAGGACAACCGGGACAACCCCGAGATTTGGTGCCACTACCTGTCTCTGTTCTCCCGCCGCGGGAAGAGGGACGAGGTGCAGGAGATGTGTGAGATGGCTGTTGAGCACGCCCCCGACTACCAAGTCTGGTGGAGTTACTTAACCATGGAGAGCTCGTTTGAGGGGAAGGACTATgtgtgtggtcgtctgctgcagtACCTACTAGACTGTTCTTGGGCCAGTGGTTTCTCCGAGAGGCTCTCCTTCCAGTTGCTGGAGTCTCTACTCTACAGGGTCCAACTCAGCGTGTTCACCGGCCGGCTACAGAATGCCCTGGCCATCCTACAGAATGCCTTGAAGTCGGTCACTGAGCAGTGCATTGCTGACCACCTGACCGCGAGTGACCGCTGCCTAGTCTGGCTGTccttcatccacctgacagagtTTGACCGCCTGCCGGCTAGCTTGTATGACCCGGCCAACTCCAACCCTTCCCGGGTGGTAAGCACAGAGTCCTTCGCCCTCCCCTGGAGAAAGCCGCTCGACGTCCGCACCGAGCCTGACACGCTTATCGCTGTGTTCGAAGATGCAGTACGTCAGTGCACAGACCAGACTCTGCCTCCCAGTGAGAGAACTCTGGTCTGTCTGCCTCTATACACAAACCTCATCGCCTGCTACAGCCTGCTGGGAAAGTACGATGCGGGCCTGGATCTGTGTGAGTCCTTGTTGGCGCTGTGCCCGCAGTCCTGTGTCCTGTTAGATGCCCTGTCAGGGCTCTACGTGGGGAAGGGGGACTGTGAGCAGGGTGTCTGCGTATGGCTACGGGCTCTGTCCCAGTGTCCATACAATGCAGAGGTCTTCTACCACACTTGCAAGTTCTTTATGGCAcagGAGAAGTCAAGTTGCATCACTCCTCTGTTCCGGGAGTTTGTCCTGTCCTTCTGTGATGGGGAGAGAAGTGAACAGAAACCTGTGGATGTGCTACGGTCCATCCTTGGTATTCCAACAGAGGACATCCTAAGAGGCCCAGTTATCAAAAAGCAACTTCAAGAGCAGCTTAGTCACCAAAAGCCTTACCTGAACCTCGTCCACTGTCTGTGGCAGTGGGTGCACGGTAGTGTTGGGGAGGCGAAGGATGCTTTCGAGAGAGCCCTGGGAGCCGTAATGCAGCTAAATGTCCTTCAAAAGCTATGGATGGATTATCTCCTTTTTACCAGCAGTAAGCTAGCTGGGAGCCCCTCCAATGGCAGAGAGCTCCGGATGTTATCAGACCTGGTCCAGCGTTGCCTAGTAACTGTCCCTTCCAGGCTGGAGGTTCCGTTCAGCTCGGCCCAGTACTGGAGCTGCTTCAGATTTCACAACAAGGTTATGTTCCACTACTTGCGCTGTCTGCCCCAGTCCCAGCACCCCCATATCCTGGAGAGACTAAAGTACACCATGCCCACCAACGCTGAACTGGCCCTGAGgtTGCTGTATCAAGAGTGGCAGGACGGAAATATAGAACATCTGAAATTCCAGGCCAGAATGTTGAGCAGTAGCATTCCAAACTATCTGGCCAACTGGAAAATAGCGATCGCTGTGGAGAGGGAACTCAAGGAGCGCTCCGAGgTCCGGCTTCTTTATCAGCAAGCCCTGCAAAAGCTTCCactgtgtgccaccctatggaaAGATcGCCTGCTGTTTGAAGCTGCGGAGGGAGGTAAAACTGATAAACTGAGGAAACTTGTTGACAAATGTCAAGAGGTGGGAGTGAGTCTAAGTGAGCCCCTAAATTTAGTCTGGAGcaaaatggagggagaggatCACTGAGGATAaccacccccaccccctcaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58417 lncRNA upstream 129371 48354149 ~ 48354514 (+) True G52300
TU58409 lncRNA upstream 140535 48343098 ~ 48343350 (+) True G52292
TU58406 lncRNA upstream 143043 48340260 ~ 48340842 (+) True G52289
TU58401 lncRNA upstream 150338 48333269 ~ 48333547 (+) True G52284
TU58394 lncRNA upstream 159073 48324579 ~ 48324812 (+) True G52277
TU58525 lncRNA downstream 20803 48530447 ~ 48540888 (+) True G52395
TU58561 lncRNA downstream 64275 48573919 ~ 48574259 (+) True G52431
TU58520 lncRNA downstream 88552 48598196 ~ 48598851 (+) True G52390
TU58580 lncRNA downstream 116954 48626598 ~ 48626797 (+) True G52450
TU58684 lncRNA downstream 308104 48817748 ~ 48819992 (+) False G52546
XM_036979133.1 mRNA upstream 194324 48256867 ~ 48289561 (+) False LOC110524253
XM_036979138.1 mRNA upstream 194324 48256867 ~ 48289561 (+) True LOC110524253
XM_036979102.1 mRNA upstream 320144 48147399 ~ 48163741 (+) False LOC118964788
XM_036979105.1 mRNA upstream 320144 48147404 ~ 48163741 (+) False LOC118964788
XM_036979099.1 mRNA upstream 320144 48157569 ~ 48163741 (+) False LOC118964788
XM_036979176.1 mRNA downstream 42437 48552081 ~ 48590914 (+) True LOC110524302
XM_021603847.2 mRNA downstream 81376 48591020 ~ 48596608 (+) True LOC110524313
XR_005051992.1 mRNA downstream 125851 48635495 ~ 48705096 (+) False cttnbp2
XM_036979261.1 mRNA downstream 125855 48635499 ~ 48706569 (+) True cttnbp2
LOC110532376 mRNA downstream 249395 48759039 ~ 48798504 (+) True LOC110532376
TU58443 other upstream 100628 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 458927 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1224987 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1622421 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2490994 45992273 ~ 45992891 (+) False G50010
TU59387 other downstream 383853 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1527930 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 2940178 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5156571 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 5478496 53988140 ~ 53988597 (+) True G59031

Expression Profile