RNA id: XM_036979184.1


Basic Information

Item Value
RNA id XM_036979184.1
length 4696
RNA type mRNA
GC content 0.54
exon number 30
gene id nup160
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48598178 ~ 48623416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATCTGTGGCTACAGCTTTAAATTTTTGAAAGGCCAGAAGGCGGTCATTCAATCCCAGAACTCAATGCGGTGAAGATGGCGGCGGTCTTGGAAAGGAGTTTTATAGAGATATGTGGATTTGAGAGGGAAACCCTACCAAGATTCCGGGAGATAACTGTAAACCTCGGTCTGAATGCTCTTCCTGGCGGTGTAAAATACCCGGACAGTGCAGGAGGCTTTCATTATGAGGAGAGTGGAAAACTCCTGTCCATCACAAGCAACAGATGCATACACTGGTCCACCTCTGGGGACACAGTTCAGCTGGTGGAGCAGTCTCTGGACACCAACCTACTGAACAATGCTGTTAAACTCAAGATCACACACTGCCACCTGCTGCCTGGAGGTGTCCACATCCAGGAGACCCTCAACAATGTCATCATCCTCATTGTCACCAATCAGACCGTGCACCGGCTGGTGCTGCCACACCCCACACGCATGTACCGCAGTGAGCTGGTGACCGAGCTCCAGATGCAGTCTATCTTCACAGACGTGGGGAAGCTGAGTCTTCAGGACCCAGCCCACAGCGCGGCGATCCCCAGCCCCGTAGGCCAGACAGCAGGCCCCTCCGCCTCGGCAGCCTGGCTCAGCCACCAGGGAGAGGCCCACTATGCCCTGGCATCACCTGCTGGGGGCATCCTGGTCATCACACTGCCCCCACATGACACACAGGGTAGCATAACCATTCTGGAGCTGAAGAGGAGCTCTGTAATGCAGAGACTCGCTGGCTGGATGCCAACTGCAATCAGAGGTGAGCAGAGTCCTGGAGACTTGGCCCTGAGTCTGGCAGTAAGGGAACTGGAGGACGACACCTTCATATTCGCTCTGTGTCAGGACCATAAACTACGCATGTGGTCCTATAGGGACCAGGTGTGTCTGATGGAGACTGACATGTTGGAGTACATGCCAGCGTGCCGTGGCGTGAAGGGTTCCCCAGGGCAGGGCCATCGGCTGCGGCTAGCCTTCTCCCCCTCTACGGGGCTGTGTCTGGCCGTATACCTGGCTGTACCTTCCAGGGGACAGTTCACTGTtctgcagctggtggccacggACAACAATCGCTACAGCCTGGACCACATCTCCTCTCTTTTTGCCACACAGGAGACACTGGTGGACTTTGCTCTGACCTCAACGGACATCTGGGGCCTGTGGCTTGACGATACCAACCAGACCGTGGTGAAATACATCAACTTTGAACATTCCACGGCAGGTCAGTGGAACCAGGTTTTTGTGCAGCCTGCCCCCGAGGAGGAGGTCCACATCGGCGCAGACCAGGACCCCAGGGAGACCTACCTGGACATGCTGTTCTCCCCCCTGAGATTCACTGCCTCTGCTATAGTCAAAGCCTTACAGATTTACAGGAGAGGCACAGAGCGAATCGCTGACCTCCCCTGGGAGACCCTCAAGAAAGAAGTGACGGTGGCGGTGGAGAACGAGCTGCAGAGCAGTGTGACAGAGTTTGAGTTTAGCCAGGAGGAGTACAGGCAGCTGCAAGTGGAGTTCTGGTCTAAATTCTACGCCTGCTGTCTGCAGTACCAGGAGGCTCTGGCCACTCCGCTCGGCCTACTgctcaacccacacacacacatggtctgtTTGCTCAAGAAGGGCTTTGTGTCATTCCTGCTGCCCTGCTTTGCTGTGGACCACATGTACCTGTCCTTTGACGAGTACCTGTTCTCAGAGGAGGATACGCCTGTCAGTGAAGACCCAGAAGTTGCTCGTGACGTGATGCAGCTGGTGCAGTGTCTGAGGCTGGTGAGTGACGCGGTTCCGGGGGACATGGCCTATGAGATGGAGAAGGCCCTGGAACATTTACAGTCACCtgagagggctgcagagatggtgctGGAGAACCTACTGGCCAATGACAATGAGAATGTGATCGAGGACATTCAGAACAAGCTGCAGGACATCCGTAACCCGGTGTCGGCCATGGCTGCACTGATCAGAGAGATGGACCTGGAGACGGACTCCGAGCCAGGAGGAGAGGGACCTCTCACCACAGCAGGCCTGTCAGTGCGTATTAGTCTGTCCCAACTGTATGGCAGCAGTGTGGCAGTGGCTGTTATCTGTCAGGCTGTCTGCCAGATGGCCATGACCAGAGTCCTGTTCTGTAGGGACCTACTCATACTGCAGCAGCTCTACCTACGCCTCGGAGACAATgtGTTCCTGGCTGGAGGGGATCAGCTGCTCCAGCTACAACAGGACCTAATCCCCCGCTCCTCTCACCTGCTCTCCTCCTACTATCTCCTCAAACACATCAGCCAGAGCCTGGCCACTGCCGTGCCCCTCGACAttatAGATGCCAACCTGCAGCACCTTTCAGTCTTAGAGCTGTCTGATTCTCCAGCCCTGGCCAGCAACAGATCAGTGTTGAGCCCTCAGACGGTGGTGGAGCTGTTCTACCAGAGCGTAGCGCGGAAGGCCATCGTCACCCAGATCTACTCCCAGCAGCAGAGCACGGCTCTACTCCACTGGCCCCAAATGGTCTCCAGCGTGGTCACCTTGCTGGCTCAGCAACTttGGCCTAACAATCCAGGCTTCCAGTTCCCTGAATGTCTGATGGGCAACTGCCAGTACACACAACTGCAGgagtaTGTGCGTCTCATTGGGCCCTGGTGTCAGGTGAACGTGGGCTCCTGCCGCTTCATGCTGGGCCAGTGTTACCTGGCCAacggagagggacagaagGCACTGCAGTGTTTTCAGGAGGCAGCGacagaggtggagaaagaggagTTTCTGCTGAGATTGACAggagctgaggaggaggaggtcacaGCCGCCTCAAGACTACAGTACTACAACAAGgtgttGCGATTACTGGAGGATGTTGGTCTACCAGAGCTGGTCATCCATCTAGCCACTCTGGCCATAACGGAGGCCGTCAACGACCCCAGGAGTCAGGCTGCCCTGTGGACCCGCATCTTCAAGCACCACCTGGACCTGGGACACAACAGCCAAGCCTACGAAGCCCTCACACAGAACCCTGACTCCAGCAGGCAGTTGGACTGTCTGCGTCAGCTGGTGGTGGTTCTTTGTGAACGCTCTCAACTTCAGGATCTGGTCCAGTTCTCCTACGTCAACCTGCACgacgagGTGGTCGGCATCATAGAGTCCAGGGCCAGAGCAGTGGACCTGATGTCTCACAACTACTACGAGCTGCTCTACGCCTTCCACATCAACAGACACAACTACAGGAAAGCGGGTACAGTGATGTTTGAGTACGGCATGCGTCTGGGCAGGGAGGTGAGGACCCAGCTAGGTCTCCAGAAACAGGTTAACTGTTACCTGGCCTCCCTCAACTGTCTACGACTCATCAGACCTGACTACGCCTGGATCGTACAGCCGTCCTCTGGCGCGGTGTATGAGAGGCCTGGCGCGTCACCGAAGAGGAACTACGACGGAGAGTTTGCTACTGGTCCAGTGAGTGGTCAGATCGACATCCTGGAGCTGAAGGACCTTCAGAAGGAGTACACCCTGGCCCGTAGCCGCCTCAACCTGGCTCAGCACCACCCGCCGTCCGCTGCCATCGCAGGCAGTGCCTCTGCAGTAGAGATGGTGTCCCTGCTGGTTCAAACAGGACTGTTTGACTGTGCCCTCTCACTATGCCAGACCTTCAAACTGTCCCTCACACCCATCTTCGAGGGGCTCGCCTTCAAgtgtaTAAAGTTACAGTACGGTGGAGAGGAGAGTCAGAATGAAGCCTGGAACTGGCTGGCTGCCAATCAGCTGTCTACCATCATCACAACCAAAGAGTCAAGTGCGACAGATGAGGCTTGGCGCCTGCTGGCCTCCTACCTGGAGAAGCACCCCACACAGAATGCTCAGCACCATCGCTGTGTCATCAACAAGCTGCTGTCACACGGTGTACCATTGCCGGACTGGATGGTCAACACCTACAAGGGCGTGGACGCTGCAGCGTTGTTACGGCTCTACCTGAACTATGACCTGCTGGAGGAAGCAGCTGAGCTGGTGTTGGAGTACGTAGATGCTCTCCTGGGGAAGGGACACCAGTACTTCGGCATTGAGAGGCCCCTCTCTGCTACAGCATCATTGGTGTGGCTCCCATACACTTCCATCGACCAGCTTCTTCAGGCGCTCAACGAGACCCAGACTAATGCCAGTATATACAACAAACTGCAGGACAAGCTGAATGACTACCACAAACTGGTGGACCAGACAACAAGGCGAAGACTCCAGGCCCAGTAGCACCTCAGTCAGAACACAGGCTCAATCTCAATTAATCTTTCCTCCTCACCTTAACCGTATTGGAAAGAATGTGATGAATCAAGGGAAGACTAATTGAAAGAGCCATAGCACTGCCCCTCCATATGGTGCGCTTACTGTCATGACTCTGGAAGAAGATAAATACACCTATTTTTGTATTAAGGTTCAAATAAACACTTTGTATGAACCTCACCAGATTGAGTTCAGGAAAAGAGTGCATCTTACCTGCTTGTTGctcaaatgtactgtatatattgtctGAGTTCCAACTAACAATTCAAGGTGTTTTCACCTCTGGAGACaatgtattttttacattgtaatcATATTGAAACATGTTCTTTTGTACTTTGCTGCCTGTGAACTTTTACAATCATGTTTGTTGTAAATTGTAATGCAATTAAAGTTTTCCTTGGTATTGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59188 lncRNA downstream 40276 48555819 ~ 48557902 (-) True G53008
TU59132 lncRNA downstream 87700 48469168 ~ 48510478 (-) True G52956
TU59165 lncRNA downstream 92087 48505510 ~ 48506091 (-) True G52985
TU59152 lncRNA downstream 98551 48495624 ~ 48499627 (-) False G52973
TU59150 lncRNA downstream 98551 48496385 ~ 48499627 (-) False G52973
TU59745 lncRNA upstream 489599 49113013 ~ 49113261 (-) True G53524
TU59763 lncRNA upstream 510527 49133941 ~ 49134182 (-) True G53540
TU59764 lncRNA upstream 511182 49134596 ~ 49135356 (-) True G53541
TU59788 lncRNA upstream 546758 49170172 ~ 49170575 (-) True G53565
TU59759 lncRNA upstream 554435 49177849 ~ 49202748 (-) True G53537
XM_021603794.2 mRNA downstream 134523 48440247 ~ 48463655 (-) True LOC110524285
XM_021603766.2 mRNA downstream 201797 48313665 ~ 48396381 (-) True LOC110524273
XM_036979153.1 mRNA downstream 276809 48313665 ~ 48321369 (-) False LOC110524273
XM_021603755.2 mRNA downstream 293349 48291626 ~ 48304829 (-) False LOC110524264
XM_021603707.2 mRNA downstream 351130 48219440 ~ 48247048 (-) False LOC110524242
XM_036979278.1 mRNA upstream 83568 48706982 ~ 48747738 (-) False LOC110532369
XM_036979287.1 mRNA upstream 83568 48706982 ~ 48748537 (-) True LOC110532369
XM_036979314.1 mRNA upstream 191391 48814805 ~ 48892167 (-) False LOC110524343
XM_036979301.1 mRNA upstream 191391 48814805 ~ 48892182 (-) False LOC110524343
XM_036979309.1 mRNA upstream 191391 48814805 ~ 48892480 (-) False LOC110524343
TU59011 other downstream 294042 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1036969 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1219635 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1308497 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 1479145 47064774 ~ 47119033 (-) False G51214
TU59630 other upstream 360771 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 1788220 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 2141949 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 2154333 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 2154333 50777747 ~ 50792069 (-) False LOC110524514

Expression Profile