RNA id: XM_036979294.1


Basic Information

Item Value
RNA id XM_036979294.1
length 2057
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110524343
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48814805 ~ 48892487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGTCCCAGAATACACTGAGAGCCCAGAGTATCATGGCTGAAAATGGGACAGGCATATTAATAGAGCAACTCAAGTCCTCCATTGCCTGGTCTTGGACATACTTCTGACAACCTGGTTCTCTGTTATGGTTATTTTTGGTTTACATTTTACGAGTGCCATTCAGATACAGCGACAACCTGACCACAGCGCCCGGCCCAGCCATGTTTGGCACAGAGTCCTCATTAAGCATGTTTCTGAACACCCTAACCCCCAAGTTCTACGTGGCTTTGACGGGGACCTCCTCCTTGATATCTGGACTCATACTGATATTTGAGTGGTGGTACTTCAGGAAGTACGGTACTTCCTTCATCGAGCAGGTGTCAGTGAGCCACCTGCGCCCTCTGCTGGGCGGCGTGGACAACAGCTCCCCAACCAACTCCAACAGCAGTAACGGCGACGCAGACTCCAACCGACAGAGTGTGTCCGAATGTAAAGTATGGCGAAATCCACTGAATTTATTTCGAGGGGCGGAGTATAACCGGTATACGTGGGTGACGGGCCGAGAGCCACTCACGTACTACGACATGAATCTCTCGGCACAAGACCACCAGACCTTCTTCACATGTGACTCGGACCACCTCCGGCCAGCTGACGCCATAATGCAGAAAgcgtggagagagaggaacccaCAGGCACGCATCTCTGCCGCACACGAAGCCCTTGAACTAGAGGAcTGTGCGACAGCGTACATCCTGCTGGCAGAGGAGGAGGCTACCACCATCGTGGAGGCAGAGAAGCTCTTCAAACAGGCCGTGAAGGCAGGAGAAGGTTGCTACAGACGCAGCCAACAGCTTCAACACCACGGAGCGCAGTATGAGGCACAgcacaGAAGGGACACCAATGTTCTGGTATACATTAAGAGGAGACTGGCCATGTGCTCTAGAAAGCTGGGACGAACCAGAGAAGCTGTCAAAATGATGAGAGACTTAATGAAGgagttccctctcctcagtatgTTCAATATCCATGAGAACCTGCTGGAGTCGCTGCTAGAGCTACAGAACTACGCAGACGTACAGGCCGTACTAGCCAAGTACGacgATATTAGTTTACCCAAATCTGCAACAATATGCTACACAGCAGCTTTGCTCAAAGCCAGGGCGGTATCGGACAAGTTTTCTCCAGAGGCAGCGTCAAGGCGAGGGTTGAGTACAGCAGAGATGAATGCTGTAGAAGCCATACACAGAGCTGTGGAGTTCAACCCACATGTCCCCAAATACCTGTTAGAAATGAAAAGTTTAATACTGCCCCCAGAGCACATTCTGAAGCGAGGGGACAGTGAGGCCATAGCCTACGCCTTCTTTCACCTGCAGCACTGGAAGAGGGTGGAGGGGGCCCTTAACCTGCTCCACTGTACCTGGGAGGGcaCTTTTAGAATGATCCCCTACCCTCTGGAGAAAGGCCACCTCTTCTACCCATACCCCATCTGCACCGAGACCGCAGACAGAGAGCTGCTACCAACAGTGTTTCATGAGGTGTCGGTGTACCCTAAGAAGGAACTGCCATTCTTCATCTTGTTCACGGCTGGTCTCTGCTCCTTCACTGCCATGCTGGCCCTCCTCACACACCAGTTCCCCGAGCTCATGGGAGTCTTCGCTAAAGCCTTTCTTAGCACCCTGTTTGCTCCTCTGAACTTCATCATGGAGAAAGTGGAGAGCATCCTGCCATCCAGTCTGTGGCATCAGCTCACACGCATCTGACAGTGACCAGCCCCGCCCGGACTTGACTGACACACTCTTTGTGCCAATATCATGGATTAGACGGACAGTGAGGATGGATTGGAAGAAAAGGGAAACATGGAGTTCTGAATTGCTTTTGACTTTATTTGATATGTTTTCATTTTGTCTTCAAATCTCATGTAAAACCGTTTTTTTGTTGTACAAAAAAAGGTGATCAATTGTCATCATTAAAAAAGTGGAAAAAGACataaaataaaatactttttGTGTATAGCAATGTCTAACCTGCCATTTTGATTGTGAAGCATATCAACATTTTAATAAATATTGGATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59154 lncRNA downstream 213390 48497012 ~ 48601415 (-) True G52974
TU59188 lncRNA downstream 256903 48555819 ~ 48557902 (-) True G53008
TU59132 lncRNA downstream 304327 48469168 ~ 48510478 (-) True G52956
TU59165 lncRNA downstream 308714 48505510 ~ 48506091 (-) True G52985
TU59152 lncRNA downstream 315178 48495624 ~ 48499627 (-) False G52973
TU59745 lncRNA upstream 220526 49113013 ~ 49113261 (-) True G53524
TU59763 lncRNA upstream 241454 49133941 ~ 49134182 (-) True G53540
TU59764 lncRNA upstream 242109 49134596 ~ 49135356 (-) True G53541
TU59788 lncRNA upstream 277685 49170172 ~ 49170575 (-) True G53565
TU59759 lncRNA upstream 285362 49177849 ~ 49202748 (-) True G53537
XM_036979287.1 mRNA downstream 66268 48706982 ~ 48748537 (-) True LOC110532369
XM_036979278.1 mRNA downstream 67067 48706982 ~ 48747738 (-) False LOC110532369
XM_036979191.1 mRNA downstream 191389 48598178 ~ 48623416 (-) True nup160
XM_036979184.1 mRNA downstream 191391 48598178 ~ 48623414 (-) False nup160
XM_021603794.2 mRNA downstream 351150 48440247 ~ 48463655 (-) True LOC110524285
XM_036979340.1 mRNA upstream 9115 48901602 ~ 48958061 (-) True LOC110524359
XM_036979352.1 mRNA upstream 79093 48971580 ~ 49044257 (-) False LOC110532382
XM_021603960.2 mRNA upstream 175002 49067489 ~ 49079893 (-) False LOC110524368
XM_021603952.2 mRNA upstream 175002 49067489 ~ 49080714 (-) True LOC110524368
XM_021603973.2 mRNA upstream 206065 49098552 ~ 49104735 (-) True LOC110524381
TU59011 other downstream 510669 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1253596 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1436262 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1525124 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 1695772 47064774 ~ 47119033 (-) False G51214
TU59630 other upstream 91698 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 1519147 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1872876 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1885260 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1885260 50777747 ~ 50792069 (-) False LOC110524514

Expression Profile