RNA id: XM_036979340.1


Basic Information

Item Value
RNA id XM_036979340.1
length 1875
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110524359
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48901602 ~ 48958061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGTCCCTGATTGGTGAAGTGATGGTATATTTCATATGTACGTGCACACAAATCAAAATCAACTGTATGATGCTGCCGACAAGCTGCTGGTGCCGGAAGAAAAGATGGCGGATCATGAGGAGCAGTTATCTGATGAGGCGAAGGTACGCATAGCAGCGAACTTTGTCATCCACGCCCCACCAGGAGAGTTCAATGAAGTTTTCAATGATGTACGATTGCTGCTCAACAATGACAATCTTCTCAGGGAAGGCGCAGCGCATGCTTTTGCACAGTACAACGTGGACCAGTTTACTCCGGTGAAAGTAGAGCAATATGAAGACCAGgtctTAATCACAGAGCATGGAGACCTGGGCAACGGCAGGGTCCTGGACCCTAAAAACAAGATCTCCTTTAAGTTTGACCATCTGAGGAAGGAGGCCAGCGACCCACAGCCACACGATTTGGACGGAGCAATGGAGGGCTGGAGGAGTGCTGTGGACGGTGCTGTCCGGGCCTACGTCAAGGAGCACTACCCCAACGGAGTCTGCACGATTTACGGCAAAACCATTGATGGACATCAAACCATCATCGTGTGTATCGAGTGTCATCAGTTTCAACCAAAAAACTTTTGGAATGGACGTTGGAGGTCAGAGTGGAAATTCGCCATCGGATCCTCCACTACTCAAGTGGCCGGAATAATGAaaatccagGTTCATTACTATGAAGACGGCAACGTTCAGCTGGTCAGCCACAAAGAGGTCCAGGAATCCATGTCCATATCTAACGAAGCTGCAACTGCAAAGGAGTTCATCAAGATCATGGAGGCTGCGGAGAACGACTACCAGACCGCCATCAACGAGAATTACCAGACCATGTCGGACACTACCTTCAAAGCCTTACGCCGCCAGCTTCCTGTGACGCGCACCAAGATCGACTGGAACAAGATCCTGAGCTACAAGATCGGCAAGGAGATGCAGAACgcttaaaacaaacaaaacagaaaagCCCAGCATTGCATGGCTGGATTATTGTATCGTCTTTGTACAAATTAGATAAATGGGAGCGGAAAAATGTTTGGTCTAACGGACAAAATGTCAAACATTATTACACTTATTAAGATGTCTACTTTTATTAATGCTTTTATACAGACACAGTTAAAAAGATAATCTGTATAATACATAGATGATAAAGTAAATAATCATATTATTGGCCAAATAGGATGTGTTTCCTAGAAGAGGGGTGGTGGAGCTTCCTTCATATGCAAACCTGACAACCTGATATACATTTTGTGACAATGTTGTGTCAATATTTATGATTATGGTAGTTAGACCACACCGTTGACCCTAGAAAAACTATACCAATTGCAATGATGAAATTATTATTGAGGAATCTGTCTGTGTATACATTTAGATTAGGACTTTATTGGCTAATGCAGGAAAAGAATCCTGTACTGTAAGAGTCCTTCCGTTGTTTTCAATGGCTTGTACTTTTATGACATCAGAATGATGTCTTTTATACGAGCTGTTTGTCACCTCTGTCATTTTCGACCACTCGATGTTCTTCTTGGTCCCCTTATTGGTTCTCCCCACACCGTTTACCCCAGACCGTACGTTAAAATCTCCAGTTTGTGTGTCCGTCCAAGCTAAACTGCAGCTTAATTCATCGATTTCTGAATTGAACTTTCATGACACCGTGAAAGTATGGTTCCTATAATACCCTAACAAGCTCAATTATTAAAAACCCTTTAATTGCTACCAAATGTGGATTAAAATGTTCAAATCAATTTACAATTAAATTAAACAAGTATGTCTTAATTTGAATTAGGACAGACCTGACTGTATTATAACATGGCACATTGTAATATATATACCTGTATTAAACATCCTTGTCCTTCG

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0008290 F-actin capping protein complex cellular_component
GO:0071203 WASH complex cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K10364 CAPZA; capping protein (actin filament) muscle Z-line, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59154 lncRNA downstream 300187 48497012 ~ 48601415 (-) True G52974
TU59188 lncRNA downstream 343700 48555819 ~ 48557902 (-) True G53008
TU59132 lncRNA downstream 391124 48469168 ~ 48510478 (-) True G52956
TU59165 lncRNA downstream 395511 48505510 ~ 48506091 (-) True G52985
TU59152 lncRNA downstream 401975 48495624 ~ 48499627 (-) False G52973
TU59745 lncRNA upstream 154952 49113013 ~ 49113261 (-) True G53524
TU59763 lncRNA upstream 175880 49133941 ~ 49134182 (-) True G53540
TU59764 lncRNA upstream 176535 49134596 ~ 49135356 (-) True G53541
TU59788 lncRNA upstream 212111 49170172 ~ 49170575 (-) True G53565
TU59759 lncRNA upstream 219788 49177849 ~ 49202748 (-) True G53537
XM_036979294.1 mRNA downstream 9115 48814805 ~ 48892487 (-) True LOC110524343
XM_036979309.1 mRNA downstream 9122 48814805 ~ 48892480 (-) False LOC110524343
XM_036979301.1 mRNA downstream 9420 48814805 ~ 48892182 (-) False LOC110524343
XM_036979314.1 mRNA downstream 9435 48814805 ~ 48892167 (-) False LOC110524343
XM_036979287.1 mRNA downstream 153065 48706982 ~ 48748537 (-) True LOC110532369
XM_036979352.1 mRNA upstream 13519 48971580 ~ 49044257 (-) False LOC110532382
XM_021603960.2 mRNA upstream 109428 49067489 ~ 49079893 (-) False LOC110524368
XM_021603952.2 mRNA upstream 109428 49067489 ~ 49080714 (-) True LOC110524368
XM_021603973.2 mRNA upstream 140491 49098552 ~ 49104735 (-) True LOC110524381
XM_036979383.1 mRNA upstream 222071 49180132 ~ 49208517 (-) True LOC110524388
TU59011 other downstream 597466 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1340393 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1523059 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1611921 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 1782569 47064774 ~ 47119033 (-) False G51214
TU59630 other upstream 26124 48984185 ~ 48985917 (-) True LOC110532382
TU61709 other upstream 1453573 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1807302 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1819686 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1819686 50777747 ~ 50792069 (-) False LOC110524514

Expression Profile