RNA id: XM_036979352.1


Basic Information

Item Value
RNA id XM_036979352.1
length 6827
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110532382
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48971580 ~ 49044257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTGATAGCTAAGGGAGCATTTTTAACTTGACAACCAATAATTAAGAATAGAGTGAGTCAGTGGTCTTTCTTGGGTAAAGTCAGGTGGAATGTTGGATAGTTTTTCTAGTGAGAAGGAAAGGTGCTTCTATAACGAGTTATAGGATATTTTATTTACTTGTTATGGCACATATAATTATTAATTAACATACAATGTGGGAACTAAGCTAAAGACTGAACAATACTGAGAAAAGTTAGCGTTGCTATCGATGAAACCTGTAAACTCACCTGAGTGTAATCGCGCGCCTTCCAACCACCCGCAGTACAGTAGTCGAGAGGAGGAGCGCTGCGCGCTAAAGCGGACAAAAATACGCAGGGGGTTagaatgcctgtgtgtgtgacctaCACATCTACATTATATCCTGAGTCACACAGGTCCGCAGCTTGTGAATCGGAGTCAGAAAGAGTCGAACTTTGTCTGAGAAACGGGAAAACGGTTGTGATCGTTGTGAAAAGAAAGGGAAAACGTCTGATAGAGTATTCAAAGTCAAACATCTTCTGCGCATCAATTTGTTCTTTAGCCGTCAAAACGTTGATGCATGCGTGAGGAATCCTGAGTTTTGTGGGCTACTATGATTTGAAAGAAGAAACCAAAACATAACTGAGATAGTTGCCTAACTGACAGGATGAAGAATATCTGCTTGTTGGACATCGCTCACATTGTGATCATCCGCTGGGCTCTTTGTTTCTCTGGGTCCGTGGTGATGGGTCAGTGTAATGAGGCAGCTGAGAACTCCAAGCTCAATCTGTCTGTGACCTACGACCTGCCCACCTTTGAGGCCATCTCCGCCATTCAGAACCTGGTAACCTTCGAGGGGACCGTCTACATTGGTGCCGTGAACCGAATCTACGCACTGTCAGAGAACCTGACCAAGCTGTCGGAGTACCAGACCGGGCCCGTGTCTGAAGGCGCTGTCAGAAGGCGGTGTGGTCCTAGTTGTCAGGATGGAGCCTGCGGTAAGACCAACGCTGTGGTGGACAACTATAACATGGCCCTGCTGGTGGAGCGTTATTATGACGATGAGCTGTTCAGCTGCGGCTCAGCGGACGCCGGTGTCTGCCGTCGCCACCTGCTGGAGAGAAAGAAGGTGGACAGGGAGGTACAGTGCATGTATTCACCCAAGACAGATCAAAGAGGACGGCACGGCTGCCCCGACTGCGTGACTAGCCCCCTGGGGTCCCGTGTGCTCAACGTGGAGAGCGGAGGCGTGGTGCGATTCTTCGTAGGAAACTCGGAGATCCCCGGAAGCCCATCCCGGATGATCTCCAGCCCCCAGGCCCAGCAGCCACAACACCACACCATCTCAGTGCGTCAGATGAAAGAAACCCAAGATGGTTTCCGCTTCTTCTCCGACCAGTCCTACATGAATTTGGCCCCGGGCCTCCGCGGCGACCACCACCTCCAGTATGTCTATTCCTTCCAGAGCGGCTACCACGCCTACTTCCTCACCGTGCAGCGCGAGGGCCACAGCTCGCAGGTTTACCACACCCGCATCGTCCGCATGTGCGGCACGGACCCGGAGCTGCGGCGCTACGTAGAGATGCCATTCGAGTGCATCCTGACGGAGAGGAGGAGGCGGCGGCGCTCAGCCAGCATCGAGGTGTTTAATGTCCTCCAGGCAGCCCACGTGGCCAAGGCGGGCCGCGAGCTGAGGCAGGAGATGGGGCTGAAGGAAGGGGAGGACGTGCTGTTCGCCGCCTTTGCCCGGTCCAAGCCAGACTCCCCGGAACCCAGTGCAAACTCGGCCGTTTGCGTCATCTCACTGGCAGACGTCAACAACTTCTTCAAGGACTTCATCCAGAAGTGCCACACCAAGCAGCCGTACCATTTCACCGGCTCCGAGGAGAAGCGCTGCTACAACGGGAGTTCCTCAGACGACTCGTTTGGCTGTGGGAAGCATGAGGAGGGCTACCGTCTGGAGGTGACCAGTACCATGGCCAGACTAGACTACTTCAGCGGGCAGTTCAGCAACGTCCTGCTCACCTCCATTGCCGTGGCGACTGCACAGGAGCAGACCGTGGCCAGCCTGGGCACCGCAGACGGACGCCTCATACAGGTGGTGGTCTCCCGTTCCAAACGCAGCACGCCCCACGTGGACTTCCGCCTGGATGACTCGCGCCCCGTGTCCCCCGAGGTGGCTCTCCTGTCCCCCCAGCGCCACGACGGCTCCCCCCAGCGCAGCCAGGACGGCTCACTCTTGTTGGTGACAGGAAATAAGATCACCAAGGTCCCTCTGATTGGTCCTGGCTGTGAGCAACAGTGGATGTGTAGTTCCTGCCTGCTGGTGCCAGGTTTTATGGGATGTGGCTGGTGTGACGGCCGCTGCACCAGGGCAGCCCAGTGTCACCCAGCGTCCCTCTGGACCCAGGACTCCTGCCCTCCCGTCATCACCACGatcTCCCCAGCCAACGGCCCCCTGGGAGGGAGCACCAAGGTGACGGTGTGTGGGAGGAACTTTGGCTTCAACAAGACGGAGAGGTTTGACCACACACTCATCAGCCTGGACGTGGCCGGGGCACCCTGCAAACTACTGAAACGAGAGAGCAACAGCAACAGgttgGTGTGTGTTCCGGCGTCTCCTGTGAACTCGTCTCTGGCTAGTAGTGTGGTGAAGGTCCACAGTGGCAAGGAGATGTCCCAAACACAGGGATTCACCTTTGTGAACCCAGTAATCAGGGAGATCTTCCCTGCATTCGGTCCTAAGTCAGGAGGCACCGTGCTCACCATCAGAGGCTCTTTCTTAGACAGTGGCAACTCCAGACAGGTCACTGTTGGGAATGCCACCTGTGAGATCCTGAGTGTGTCAGTTACCATGCTGATGTGCAGGACCCCTCCCCAGTCGGCCCCGTCCCTCCAGGCGGTGTATGTGAGGGTGGACTCTGTGGTCCGAGAGGCCCCTGTACTCTTCGCCTACAACGAAGACCCTCTCATCTCCAGCATCCAGCCCACACGGTCCTTCATCAGCGGAGGCAGCACTGTGGTGGCCCAGGGCTTCTACCTTCACTCGGCTTCCCCGCCTCAGATGGTGCTCATCCCCACAGCCCAGGACGGCAAGGTGTTCACTGTGAGCTGTACGCAGGGTGAGGACAGGCTGACCATCCTGTGTACCACTCCCTCCCTGAAGGACCTGGGCCTGCAGCCTCCTGTGGTCACCAAGGTGGCGTTCGTCCTGGATGGTTTCACCGCGCCCCAGTTTGACCTGCTGTATGTGGAGGATCCTCGCTTCGAGGACTTCCAGAGACCCACCGTCACATCCAAAGGCAACAAGAGCATCCTGGAGATTAAGGTGCCAGGTCGTGTGGATGTGGAGGCGATGAAGGGGGAGGTGCTGAAGGTGTCTAACAGGACCTGTGAGAGTGTGACTGTGGTGGGTAACACCCTGGAGTGTACTGTCCCCATGGAGTTACGGGATGCCACCAATGAACTGGAGGTGGAGTGGCGTCAGGCATCGTCTTCAGTGAGTCTGGGAAGAGTGATGTTGGCTCATGAACAGGACTACAGAGGGCTGAtagctggctgtgtgtgtgtcagcctgtttCTTCTTCTGCTGCTCGCTCTATTCATCTGGAAAAGGAGGAACAAGCACATTGACGATCTGGCTGAGGGTAAGGTTTGGTATGATGGCCGAGCTCACATTCAGCACTTGGACATGTTGGCAAACGCACGAAGCGTCAGCCCTACTAACGAAATGGTGTCCCACGAGTCGGTGGACTATAGAACCACCCTGCTGGAGGACCAGGGCGTGGAGAGGCCAGAGTCGTGCAGGGGGGCTCCCCCCATCTACGGGGGCCATGGGGAACTCCTGTCCCCCAGGCTGGGGCTGGGTGGCATGGGGATGGGGATAGGtctgggggtggagggggagctGGTGTCCCCTCTCCTGTCGGCCTCGGTCCACATCGACACGTCCCAGCTGCACCCTGACCTGCTGAAGGAGGTTCAACATGTGGTCATCGCTAGGGAACACCTGCTGTTACACCTAAGCCAGGTCATAGGCAGAGGTCACTTTGGATGTGTGTTCCATGGGACCTTGTTAGAGGCTGACGGTCAGAAACAGCACTGTGCCATCAAGTCCCTCAACCGGATCACTGACCTGGAGGAGGTGTCTCAGTTCCTGAAGGAGGGGATCATCATGAAGGACTTCAGCCACCCCAACGTGCTGTCTCTACTAGGGATCTGTCTGCCCACTGAGGGCTCTCCTCTGGTGGTGCTGCCGTACATGAAGCACGGAGACCTCAGGAACTTCATACGGGAAGAGACACatAACCCCACAGTGAAGGACCTGATGGGCTTTGGTCTGCAGGTGGCCCGGGGCATGGAGTATCTGGCCAGCAAGAAGTTTGTCCACAGAGACCTAGCCGCAAGGAACTGCATgctGGATGAAAGCTACACAGTGAAGGTGGCAGACTTTGGCCTGGCCAGGGATGTGTATGATAAGGAGTACTACAGCATCCACAACAAGAGTGGAGTCAAActacctgtcaagtggatggccCTGGAGAGCCTGCAGACACACAAGTTCACCCCAAAGTCAGATGTGTGGTCGTTTGGCGTGTTGCTATGGGAACTGATGACCCGGGGAGCCCCGCCGTATTCGGACGTCAACTCTTTCGACATCACTGTGTTCCTACTGCAAGGGAGACGGCTGCTGCAGCCAGAGTTCTGCCCTGACCCACTGTATAACGTGATGGTCGAGTGCTGGCACCCCAAGTCGGAGAGGAGGCCCACCTTCTCAGAGCTGGTATCCCTTATCAACGGCATCTTCTCCAGCTTCAGCGGAGAGCACTACATCCTTCTCAACACCACCTATGTCAACATAGACAAGATGAGCCCCtacccccctctcatctcctcatcctcctcttcctcctccacccttcAGGGCCACCCCCTGGAGCGAGACTGCTGcacatgagagagagggagtgatggagagaaagaaagagagagagagagagggagagatgaaagaaaaatagttaaggagaaaaggagagggcaTGGGGAGAGATTGAAGACAAGGGGGTAAAAGGAGGGTAGGAAAAGAATGAGTTTGAcagagtaagaaagagagagaaaagagtgggCTTGAGGCGGCGAAGCCGTTGGGTCGCTTGGGAACTGTatgtgactgacagacagacactggacaAACTCTGTGTACGCTGGCTGAGAAAAGACAGTTTAAGGACACTGACACGTGCCGTGCCTACTTCAcgtgtgtgtaatgtatgtatACTGACCAATGACCAACCAAACAAACATCACTGTACGCCTGAGGCCTGTATGAACTGTTAGGTCGATCTTGGCCTCCCTCTGCTCTTTAACCTAGAACTTGCTCTAGACCCTCCCATGACCTTTTACCCTGGTATGCCCTTGGAGCCTGACTTCAGGAGGTCAGGCTTCTCGTCTCTCTCTACCACATACAATTTGGAGACATAGGAGAACCTTTTCAATGAACAAAGCCTATAGAATTCTATAGAAGCACATTGTGTGTATCAAGTACAAGTGACTCACCCAACATTTCAACAACTCCCGTGCCAAAGAGGGACCGGATGATTTTTGGAGACATTTCCGCTTGTTAATGGGTGGCATGTGTATGGCGATATGGCGAAGGGCCGGGCTCCAGGTTTTTTTTCCCCTCGCCATAAAATTATTTACACCATCACCCGCACTGCCACTGAATTcccctctcttcccacctctcctcACATGCCTCCTCGCATACATCCCTAAGCACTAGGACTGAATGAAGAAAGTCCCAGCTCCAGCCTCCAGGGGATGTTCTCACTAACCGAGGTGGCGGTGCAGATTGGCTGGCAGAAGGAACAATTTGCTGCCCGTGTGCAGTGGGCTACACTGGATACTTCTTTATGTGTGTAATTATCTTTGACGATTCTCTTTTGATGTGCTTCTTTCAAAACATCTCGCTGCTTCATTGCTGTGAGTGACTCACCTTTTAGGAATCTGCAGACGTTTCCCAGttgaaatgtgtattttttttttgcctcGGTTGGACTTGAACCGGCCCGTCATAATGTCTACATAGCATGTGTCATAGCAGTTCATGCAAGCTCAGCCTGAAAACAACTGACATAATCATGTTTTAGACTTCAGAGAGTCAAGTGGGGGGAAACTGGAGACACGTTGGAACATTTGATGTTTTTTTGGGCATCATAGTACTACGTCAGTTGGAACAAGTGTTTTTACTGTCAATCATGACTTCATCGCGGCGTTGTTACACACTGCTATGTCGACATTTTGAAAGGCCACTTCAAGTTAAAACGTGACCATTTTGCCTCTCCTGTGTGAAGCGTTTGTCTTTTTGTTACTATGGCTGCTGTTCTGTTTTAAATGATCAGGCCAGCAATGGACAGATATGAATGTTTGCTCAAATAAATGTTTAAAGAACTGTACTATATTTTTTATAATGCCTTTTATTATGAAAATGAGCCTAAATAAATGGTCGGCCCAATAGAATAATGCCCGAAGTACAAACAACCGATACTGTACAGTCATTGAACAACTGGAGCTAGCAAGTTCACGTCCTTAACTATTAGACTGTTCTAGATGTTCCTATTGGTAACTAAATGGCTTGTAAATCCATGACTTTTGTCCATTAATATGCCATTGAGCTCACTGTCAGTGCAGTGTGAGCATATATATGAAGCACTGTTTAGGGATCGTCTATGAAAATAGTGATGGTACATATGTTGTTACTATGTTATGTCATCTGACTGACTCGGTGTAATAAAACTATATTATCAGTGTGGACATGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59154 lncRNA downstream 370165 48497012 ~ 48601415 (-) True G52974
TU59188 lncRNA downstream 413678 48555819 ~ 48557902 (-) True G53008
TU59132 lncRNA downstream 461102 48469168 ~ 48510478 (-) True G52956
TU59165 lncRNA downstream 465489 48505510 ~ 48506091 (-) True G52985
TU59152 lncRNA downstream 471953 48495624 ~ 48499627 (-) False G52973
TU59745 lncRNA upstream 68756 49113013 ~ 49113261 (-) True G53524
TU59763 lncRNA upstream 89684 49133941 ~ 49134182 (-) True G53540
TU59764 lncRNA upstream 90339 49134596 ~ 49135356 (-) True G53541
TU59788 lncRNA upstream 125915 49170172 ~ 49170575 (-) True G53565
TU59759 lncRNA upstream 133592 49177849 ~ 49202748 (-) True G53537
XM_036979340.1 mRNA downstream 13519 48901602 ~ 48958061 (-) True LOC110524359
XM_036979294.1 mRNA downstream 79093 48814805 ~ 48892487 (-) True LOC110524343
XM_036979309.1 mRNA downstream 79100 48814805 ~ 48892480 (-) False LOC110524343
XM_036979301.1 mRNA downstream 79398 48814805 ~ 48892182 (-) False LOC110524343
XM_036979314.1 mRNA downstream 79413 48814805 ~ 48892167 (-) False LOC110524343
XM_021603960.2 mRNA upstream 23232 49067489 ~ 49079893 (-) False LOC110524368
XM_021603952.2 mRNA upstream 23232 49067489 ~ 49080714 (-) True LOC110524368
XM_021603973.2 mRNA upstream 54295 49098552 ~ 49104735 (-) True LOC110524381
XM_036979383.1 mRNA upstream 135875 49180132 ~ 49208517 (-) True LOC110524388
NM_001165141.2 mRNA upstream 180455 49224712 ~ 49228631 (-) True cbpa1
TU59011 other downstream 667444 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1410371 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1593037 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1681899 47288939 ~ 47289681 (-) True G51285
TU57229 other downstream 1852547 47064774 ~ 47119033 (-) False G51214
TU61709 other upstream 1367377 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1721106 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1733490 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1733490 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 1733490 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile