RNA id: XM_036979383.1


Basic Information

Item Value
RNA id XM_036979383.1
length 2373
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC110524388
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49180132 ~ 49208517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGCCCTGTTCCAAAAGGAACGTGATCAATTTTCACCCGGTGCAAAAACGCCTACCCGGGCCAGATTATACGAATCTTTCCCAATGCAATGAACGGGACAGCGGTGCTTGAAGAAGTGATGGGCGAGTAAAATCGATCAACTCTCGGTTTTGTTTCTAAAGATTGGTGTCAACGTAAAGTCAATCCAAGTTTTTGGTGTTTATTTGCAAGTTACGGCGGGACTCAAACAACATACGGAGGGGAATTGAAAATGGAGGTAGAAAAGGAAATAAAGAAGATGACCCTGGGCCACGAGATTGGTGCCGGAGCCGCGTGCCTGAAATGCAAGGACAAATGCGAGGGGTTCGAGCTGCACTTCTGGAGAAAAATCTGCCGGAACTGTAAGTGTGGCCTGATGGACCACGATGTTCAGATGAACTCTGAGGATGACCGGAAGGTTGGTAAGCTGTTTGAGGACACCAAGTACACGGGTCTCGTCGCCAAGCTCAAGACAGACGGCGCCCCCACATACAAGGGCAACCAGGTCACCTTCTCCATCTCCCCCAGCCCCATGTCAGCCACCTCTGTACCATACAGTCCCCACACTGTGCCAGCCAAGGCTGGCTATGGTGCTGAGGGTGGGGCTGGGGCCGTACCTGGGTCTGGTGCTGGTGCCGGTTATGGGGCCAGTGCTGGGGCCGGTGCTGGGCCCGCTACCATGTCCAAACCAGGGGCAATCAGACCTAATGCTGTGTCAGTCAATGTCGTGCCAGTCAGGAAGGATGCTGTGAAGTCTGTCACCTACGAGTGGGCACCACCAGGGGTCAAACAGTATATGGCTGTCCGCTACATTGAGCTCCTGCCCCCAGAGAGGCGTCCCATAGCGGGCACAGAGGGTGCAGCCTACCGCCGGCAACAGATGGCAGTGCAGCTACCGGAGCATGACCAGGACCCGGCCAAGTGCCACGAGCTTACCCCCGCAGAGGTGAAACAGATGCAGCAGTTCGTCCGCAAGTACAAGGACGAGGCCCTGGGAGTGGGAGACATCAAGCTGCCCGAGGagatgatgggacagggtctgggTCAGGAGAGAGCACCAGGCATGGGAGCACCAGGCATGGGAGCACCAGGCATGGGAGCAGCAGGCATGGGAGCACCAGGCATGGGAGCACCAGGCCAGGGAGGACCAGGACAAGGACGACCAGGGATGGCAGAACACCCAGGGATGGCAACAGCTGGGGGAGCCTTTGGGCCTGCAGGTCCTGGTCTTCGGACTAGACCCGGGGCTGGGGGTGCACTTGGGCCAGCAGGACCAGTTCAGCCTGGGACGGGGGCTGGGGGTTACCCTGGGGCTGGAAAGGGTGCACCAGAAGACATGGGTACTGCTGCCACCACTACCGCTGGGTCAATGGGCACTCCGGGAGCCCCTGGATCTCACCAGGCTGGTCCCTGTGGACAATACTCGTGCCACCAGTGCCAACTGCCCATGCGTCAGGGCGAGCCTGCGGTGTACGCAGAGCGTGCTGGCTACGACAAGCTGTGGCACCCGGCCTGCTTCGTGTGCTGCACCTGCTCAGAGCTCCTGGTGGACATGATCTACTTCTGGAAGAAGGGACAGCTCTACTGCGGACGCCACTACGGAGACAGCGAGAAGCCCCGCTGTGGAGGCTGTGACGAGcTGATCTTCAGTAATGAGTACACACAGGCCGAGGACCAGAACTGGCACCTGAAACACTTCTGCTGCTTCGACTGTGACTGTGTTCTGGCTGGAGAGACCTATGTTATGGAGAACAACAAGCCTGTCTGCAAGCCCTGCTACATGAAGAGCCACGCAGTAGTATGTACAGCCTGTCAGAACCCAGTGGAGCCCGAGGCCCAGCGCGTCTCCTACGGGGAGTTCTACTGGCACGCTGAGCCCCAGTGCTTCCAGTGCTCCTGCTGTGCTAAGTGTCTCATTGGAGAGCGCTTCATGGCCATACAGGGCATGCTCTTCTGCTCTGTCGAGTGCAAGAAGAAGACCATGACCTAGAGAAGACTATATGGCCCAGAGCAGCTCAACCTGATGACAAAATTATTCAAGTCTGGTCTAGAATGCGAACAATGGTAATTTCCCTTGACCTCAAACAAGGTGGTTCAGTCTGCAACTGATTCTTGCTCAGATCAACTCTGCTCCTGATGACAACCAACCCCAGTCCTGAACTCAGCTAATTTTAGTTTTCACTCTGCTTATTTCCGCTCAAGACAGCAACCGATCATCTGAATAACAGTTGGGAATAACCTCAATATTGTCTGTTTCTCACTTGACATGCAACTGTTTTGTTCTACTGCATCTCAATGAAACTACTCTAGTTTTATTGAGATACATTTTGTTGAAGTCTTGTTTCAGcacac

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24270 TES; testin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59788 lncRNA downstream 9557 49170172 ~ 49170575 (-) True G53565
TU59764 lncRNA downstream 44776 49134596 ~ 49135356 (-) True G53541
TU59763 lncRNA downstream 45950 49133941 ~ 49134182 (-) True G53540
TU59745 lncRNA downstream 66871 49113013 ~ 49113261 (-) True G53524
TU59154 lncRNA downstream 578717 48497012 ~ 48601415 (-) True G52974
TU59878 lncRNA upstream 70506 49279023 ~ 49279344 (-) True G53651
TU59879 lncRNA upstream 73143 49281660 ~ 49281864 (-) True G53652
TU59882 lncRNA upstream 74369 49282886 ~ 49283092 (-) True G53655
TU59893 lncRNA upstream 80682 49289199 ~ 49289470 (-) True G53666
TU59904 lncRNA upstream 91434 49299951 ~ 49300214 (-) True G53677
XM_021603973.2 mRNA downstream 75397 49098552 ~ 49104735 (-) True LOC110524381
XM_021603952.2 mRNA downstream 99418 49067489 ~ 49080714 (-) True LOC110524368
XM_021603960.2 mRNA downstream 100239 49067489 ~ 49079893 (-) False LOC110524368
XM_036979352.1 mRNA downstream 135875 48971580 ~ 49044257 (-) False LOC110532382
XM_036979340.1 mRNA downstream 222071 48901602 ~ 48958061 (-) True LOC110524359
NM_001165141.2 mRNA upstream 16195 49224712 ~ 49228631 (-) True cbpa1
LOC110532387 mRNA upstream 555478 49763995 ~ 49822972 (-) True LOC110532387
XM_036979394.1 mRNA upstream 639861 49848378 ~ 49876492 (-) True LOC110524413
XM_021604073.2 mRNA upstream 1051887 50260404 ~ 50270301 (-) True LOC110524441
XM_036979433.1 mRNA upstream 1159049 50367566 ~ 50374531 (-) False LOC110524445
TU59630 other downstream 194215 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 875996 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1618923 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1801589 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1890451 47288939 ~ 47289681 (-) True G51285
TU61709 other upstream 1203117 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1556846 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1569230 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1569230 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 1569230 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile