RNA id: XR_005052015.1


Basic Information

Item Value
RNA id XR_005052015.1
length 4851
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC110524421
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49823910 ~ 49834003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCAAGCCAATAAATCCCCAAACTTCCGGGGCAAAGTTTAAGCTAAAAAGGGCACTGATTTCAGAAACGTGTTGTCCCATATGTACTGACACTATCAAGAAGATGAGAACACACTTTGCTTGATATAAACCATGAACATGTTTGTGTTGAAAATCTCTCTAAGCTATCTAGCTGGCTAAATGACTGGCTAGCCTTTTGCGACGTTGAAACGACTTTATCAGCCATAGTAAATCTATTTACGATTGTTGTCAGTGGTAACTTAGCAACTGGAGCAGGTGTTTGGTCAAATATgttctcattgttctatctgtatGCTTAGCTAAAATACCAAGTAAGCTCGCCAAATACGTTGTGTCAGGTATATGAAAAAAGTTCCTGTTACCTAGCTGTAACTACACAATTGTCAAGATGCCTCATCTTGACTGGAGTAGGGTAATTGATTCTGACCTAGAACAAATGCACGAGAGTGGAGATGCAGATATAATTAACCAAATGTGTCTACATGTAACGTTACAGTACTGTTCCAAAATGCACATACCTGCACCCCAAATCCTCTTCTAATCTGATACTGTATCAATCAAATAGTCCAATCTAGTTTTTCGTTTTGATATGGATGTATGACCATTGAAATGAGTGGTTCTGCTACTGATTTGTCCGTAAACAAACAACCCTGCCTTCTGCCAAAGCATATACTGCATGTGTCTGCATAATGCCTAAACAGACTAATCTTCTTCTGCGCACCTCATTTTCATCCCCCTACCATTTCCCCTGGCCAGGATCAAGCACCTGGCTTGTAGACTAAACAAACGTGTAAGCAATTTTGTTCTCTGCTACTACCAGTGAGACAGGAACATATATAAAAGACCAAGCAGTACTTGTTACTGGATCTCTAGACACTGCTGGTCACAGGGTTTTACTTCATTCTGCACCAAGCATTACTGATGACGTGTTTCTGCCTGATGTTAAATTCACTGTGTGTTTCACTGGACTGCTGGGGTGCCCTGTTTCTCTGCAGGTCAAACAATGGGAGCAGGAGCTGAAAGATGGAAGCCCAGAGAAAATAGTTCAGCTCTTGCGAGTCGCTCGGGGCCTTCTAAAGAAAATAAGTGGAAGGCAAAGGAATTAAAGTGGGAACAAGAGTTTGAGGCTGTGCAAGAGCGGGACAATCAAATCAAGATGCTGACAGAGCAAGTATacgggggagatggagagaaatgccCTGCTCATAGAGGAACTCAAGAATCCCCTGAAGAAAGACAGAGTCATCCAGCAGAGGAAGCTGGACAAGCTAAATGCTAAGCTGCAAGCCACAGAGACAAGAGCACGGGAGGCAGAACGTGTGGCCGAGCTAGCCAAGACAGACGCCAGGGACACCCTAAACCACATGATAATCTACGAGTCTGGCACTGATGGTCTGCAGGTGGCCATCGCTGAGATCAAAGAATGTAAGAATCAGATGAGAGTGTGAGACCGCGAGACGGAGGCCATGACCACAGATATCAACCAGCTGGAAATGAGAATCAATGCAGATGTTAAGGAAAGTCTCGGTCTGGAGCCCCAAGAGGAAGTGGATCTGACGGAATTCAGAAGAACCGAATCCCTGAAACAGCGGCAGTTCAAAGCAGAGAACCAGGATCTCACCAAAGAGATCGAACAACTGGAAGGGGAGACACTTGAACTGAAGAAACAAATCAGAGGAATGGTAAAGGACAAAGGTAAataccagaggtgggaccaagtcacctATCATTCGAGTCACAAGGTCCGAGTTTCAAGTCAAGTCCCATGTAGAACTTGTCAAGTCCAAGTTGTGCATTCTAAGAGCAAGTAGAGTCGAGTCGCAagtcaagtaaaaaaaaacatgtatacatgcaatgacttgttcaactacaaatcaatcaatcaaatgtatttatagagccctttttacatcagccaatgtcacaaagtgctaaatCTTTGTCTATTTATTGAGTCTACCAGACAGCCCTTTTCATGAGTTTGTCTACAACACATTTTGATTAGCCTATGTAATTGTAAAATAGGGACCTTGTAGCAGTCGTAAGGGCATGAAATCAGCAGAAGGCAAAGCAGGTTGACGTGCCAAAGAGTGTAGATTTATTTACAGGTTTAGTTGATCCAATGGTGAAAGTGCCATATCATACAAAATATACAAGTAGATTTACCAAAGATAAATGGTCAATAGCCCAAAAGGAATAGCCTCTGTATCAGGCTTAACCTGTCCTATCTGAACGGACACAGGCGAGAGGGTAAAACTCTAAAGTGTCCCCTTGAGACACCAAATTGAATCTGTTTAACAGCTCAAACGGGTAGACCTACATAATATAAGCACTTGGCCCCCAGAACCATATAATTACCCAATTGGCAAATACAATCAATAAACTGGTTCTACAATGTAAAAGGCAATTTCCACATCCTTTGTTACATTGGTACATTCGTCTTAATCAGTCTTAATGATATTTCAACAcaatgtgtaacagtataactttagaccgtcccctcgcccatacccgggcgcgaaccagtgaccctctgcacacatcaacaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgctgcccttgcagagcaaggggaaccactacttcaaggtctcagagcaagtgacatcacagattgaaccgctatttagcgcgcaccaccgctgcCTAGCTAactgtttcacatccgttacacatgcaTACATGGGAACAGAATGAAAATGACAGGACACAGAACTCCGACATAACCcgggaaatatgaacaaaggaaaccatacatttaattaaataaaCAGAACTTCTACCTCATGAGTCTTGTGAACATTCATGTGCACAATAAACATCGCGCCCACTCAGAGGGTAAGAAATGGTTGGCTAAATGAACATGTATCGTAGGGCTATGAAACAAATGTTTACATGTTGCAATAAACGGTACGGAGATGGAATGATGAAACGCTAGCAATTATTGTGGTATTAGATGGAATATAGATTTAACACATAGGACATATGCATTTAAACGTGTGAACGCAAGCGCAAACATTTcagcaagataaaaaaaaaagcacTCTCCACTGGACTgaggtaaagacagtttcaggttggatattcGCCTGTAGTTTTCCTTACGTCCACCAACAACAGTTGGGGATTgtcaacatagtgacaaatcCAAATgttcaaatttcaatagctctttaacCATTACTTCTAATACTTTCAAAACTGTTTGTAGCTAACCCGATGGCATAGACATTGCTCACCcttttagtttgtccatttttgTCTCACAtgctttttttttacattaatttttcaaaatgtagaatttcaatagctccttggtcgtGTGACCTGGTAACATCAAACAAGTTTCAGGATGTCCACTCAGTGgccctacacattgcacaccttTTAGTTTGACCATTTTCATCTCATAtggttttacatacatttttcaaaatgtaaaatTTCAATAGcaccttggtcatgtgacctaatgtccgctgactacccttctatattgcacactcttgtttgtgtactgtaaaaTCACGCGGTGTAACGTACATTTTTTCATAGTTTCACATttgcaatagctccttggtcatgtcaatTACACACCTAAGAAGCATGCAGTGGATATACACCCATATTGCATAACCTCTAGTCATGTATCTTCTATATtgttgtatattattattattagtttgaCAATTAGGGAGTTCAGTCCAGTGTTGTTTACCCTTTTCTTTAATATTTATCTACAATAATTGGTAGTTCTAAGTActtattttccctgtttttttttccccccacagtATTTAACAGCGGTAcacaataggagagagacagataatatcTCCTTTCTTCGTAAATGTCAACCATAAAGGAAAAGGGCAAAGTACGAGAGTCatgctattaattgtccaaagcaGGAATGGAGAGTAAGCTAGTGAGGTAGGCTGCAGTGGGTTTGCTGGCCATGACATATACTGAACATGTAACCACAGTAATGGTGGCCAGTAAATCaattaataaaaatgtaatattgacaaatgaaacaaattgtagacctatAATATTTTCCAAGATGTCAACAGACACGTAACTTCAATTAAGTATGAAACATTTCACAGTGTTAACTTTCTCTTTgtcctggttgatgtacatttcagagcctcttcagtgtggatggggtATAGCATACATTTTCAACAACAGACTGTACTTCCAGTTTGTGTTGTTTACTCTGTTGAACTCTTTTGTCTTCATTCCTAGGCACAGCACATGGAACCACCGTTGGCATGTAAAACATTCAATCAAAACAAAACAATGCGTAACACGTTATAAATAATATCAAATATCAATGCAGAATGACGAATTAGCCATCCATTGTGTTAAAGTGTATAATAAAGTGTCTTACATGCCGTCACTGTTGTCAAAAGATtataaacatgttaaataaaGTTACTAACCCAGTCAGTCTTTGGGCCACATCCAGGTTCTTTATCAGTGGCACACATGAAGCAGTTGTTGGCTTTGTTGAACTCTGAAATCATAGGCATGAACTGAACATATGGCTGTCCCACGCAACTACATAAAAAGAAAcaatttacatttactttgaattAAATGTCATTACAAACCAGACATTTTTAGTATATCCTCAGCCATTTCTTTTCGCAGTTGCTCCATTTATTTTTGAAGGTTCCATATCGATTTGGGAGGGGATGTTGGGGAAGTTCTGTGTAACTTCCTTGGCCATCTACACCAAAAAATAAAATAGAGTTTTTGACCTAATTGTCACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60281 lncRNA upstream 27702 49793247 ~ 49796208 (+) True G54041
TU60128 lncRNA upstream 238044 49554714 ~ 49585866 (+) True G53899
TU60100 lncRNA upstream 307830 49515610 ~ 49516080 (+) True G53872
TU60045 lncRNA upstream 399269 49424385 ~ 49424641 (+) True G53817
TU60039 lncRNA upstream 404121 49419588 ~ 49419789 (+) True G53811
TU60725 lncRNA downstream 88368 49922371 ~ 49922630 (+) True G54472
TU60729 lncRNA downstream 90167 49924170 ~ 49924397 (+) True G54476
TU60734 lncRNA downstream 92916 49926919 ~ 49927144 (+) True G54481
TU60760 lncRNA downstream 112604 49946607 ~ 49946846 (+) True G54507
TU60785 lncRNA downstream 132081 49966084 ~ 49966283 (+) True G54532
XM_021578809.2 mRNA upstream 120952 49666532 ~ 49702958 (+) False kitlg
NM_001281361.1 mRNA upstream 123535 49666544 ~ 49700375 (+) True kitlg
XM_021604008.2 mRNA upstream 383678 49435762 ~ 49440232 (+) True LOC110524405
XM_021603917.2 mRNA upstream 1008897 48804907 ~ 48815013 (+) False LOC110524349
XM_021603926.2 mRNA upstream 1008897 48804908 ~ 48815013 (+) True LOC110524349
XR_005052020.1 mRNA downstream 13617 49847620 ~ 49848979 (+) True LOC118964840
XR_005052021.1 mRNA downstream 203520 50037523 ~ 50083540 (+) False LOC118964841
XM_021604059.2 mRNA downstream 392353 50226356 ~ 50231065 (+) True LOC110524434
XM_021604100.2 mRNA downstream 621553 50455556 ~ 50509791 (+) False LOC110524453
XM_021604143.2 mRNA downstream 696645 50530648 ~ 50592851 (+) False LOC110524456
TU59387 other upstream 929998 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 1440653 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 1798952 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 2565012 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 2962446 46857908 ~ 46861464 (+) True LOC110524042
TU60888 other downstream 203571 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 1615819 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 3832212 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 4154137 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 4210846 54044849 ~ 54062254 (+) False LOC110525327

Expression Profile