RNA id: XR_005052020.1


Basic Information

Item Value
RNA id XR_005052020.1
length 1136
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118964840
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49847620 ~ 49848979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaagtctgaccagaagaccattGTTTTgtgtcagcctctggaatcagctCAAATGCCCTGGGAAGTTCGGACAAAGGACCCGCTTCGGGAAAgccgtattcctggtcgtagtgctgGAAGGGGACCCTGTCTTAATCTCCACACGAGAGCCTGGGTTCGAGGATGCTGACAGGAGCTCATCCAGGTAACCAAGCGCATAATCAAATTTGGCACTCGTAAGATGCCTTGACCATTTTTTCCATTCCTTTAAATATTTTTCTTTCTCCTGGCATGGGGGGGGGGCATCCACAGAGAAGCAGGAAAGACTGCATTACACACGTCGTTCAACACTGACTAGTTACAACCCACTTCAGAATAGCCTCTTGATCTAATGATATATTGCAACAATGTTTTGTTTGTTATCCTTTTCTTTTTATAAAGGGAAAAATGTGAAGTCAACTTTCATCATGCAAAATAAAGCCAAAATTAATCATAATCAGCATGAGAAAATGTAACATTTGAATTAAAATAGTGCAAAGGACAACAAAAATGTGTCAGTGCTCAAGTATTGGACTTTATTGACGGTTAAGCAATATCAGTGCACAATACTCATCACTTGAATACAACATGATCAAAATCCATTGCTTTCTACATACACATGGTTTGTGAGCACATTGGCTAATCTTGTTGGGCAAAGTGAAGATTTTATTTCATGACTTCATTAAGATTTAAGTTCAGTATGGTAAGCCTTTATGCGCTATACAACTTTCTCACAAGCTTTTTTTTATTCGCCAATTAAAAGACAGTATAAAATTCACTTAAACATATCGGTATAAACTCAATATGCTGGGGAAAATATATTCCTGTACCCCCACCTTTGACAAACTTTACAGGCAAAAGGGGGAGGTAAGAAGTTATCcaattaattttaaaaaaggtGACTTTTGTTACGTTCTTAGACGTTCACACTAGTAAACCAGATCGAGCTTCATTGGAAGTCCAATACAGGGGTTGTATTGTGTTAGTAGGCCAGGATATTTATATCAACATTTCTGCATTGGGCTGGGCTTTCTTGTATAGGCATTTCTCTAAAAACAAAAAGGATATTCTGTATCCCAACATGAAACACAAAGCCCATCTAAGAGGTAAAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60281 lncRNA upstream 51412 49793247 ~ 49796208 (+) True G54041
TU60128 lncRNA upstream 261754 49554714 ~ 49585866 (+) True G53899
TU60100 lncRNA upstream 331540 49515610 ~ 49516080 (+) True G53872
TU60045 lncRNA upstream 422979 49424385 ~ 49424641 (+) True G53817
TU60039 lncRNA upstream 427831 49419588 ~ 49419789 (+) True G53811
TU60725 lncRNA downstream 73392 49922371 ~ 49922630 (+) True G54472
TU60729 lncRNA downstream 75191 49924170 ~ 49924397 (+) True G54476
TU60734 lncRNA downstream 77940 49926919 ~ 49927144 (+) True G54481
TU60760 lncRNA downstream 97628 49946607 ~ 49946846 (+) True G54507
TU60785 lncRNA downstream 117105 49966084 ~ 49966283 (+) True G54532
XR_005052015.1 mRNA upstream 13617 49823910 ~ 49834003 (+) False LOC110524421
XR_005052016.1 mRNA upstream 13617 49823916 ~ 49834003 (+) False LOC110524421
XR_005052014.1 mRNA upstream 13617 49823918 ~ 49834003 (+) False LOC110524421
XR_005052013.1 mRNA upstream 13617 49823919 ~ 49834003 (+) True LOC110524421
XR_005052017.1 mRNA upstream 13946 49823917 ~ 49833674 (+) False LOC110524421
XR_005052021.1 mRNA downstream 188544 50037523 ~ 50083540 (+) False LOC118964841
XM_021604059.2 mRNA downstream 377377 50226356 ~ 50231065 (+) True LOC110524434
XM_021604100.2 mRNA downstream 606577 50455556 ~ 50509791 (+) False LOC110524453
XM_021604143.2 mRNA downstream 681669 50530648 ~ 50592851 (+) False LOC110524456
XM_036979468.1 mRNA downstream 681669 50530648 ~ 50592851 (+) False LOC110524456
TU59387 other upstream 953708 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 1464363 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 1822662 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 2588722 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 2986156 46857908 ~ 46861464 (+) True LOC110524042
TU60888 other downstream 188595 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 1600843 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 3817236 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 4139161 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 4195870 54044849 ~ 54062254 (+) False LOC110525327

Expression Profile