RNA id: XM_036979433.1


Basic Information

Item Value
RNA id XM_036979433.1
length 1941
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110524445
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50367566 ~ 50374531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCCTTTAAGACTAGACAAACTAACGGCTTTGGCGAATAATTGTCTTACCAGGGTAACCTATATAGATGCTCCATTTTGTCGAACGTCAACAGTAATTCTATTTGGTCAGTTGACAAGATTAATTTGAGCGACGGGATCTGAGGAAGAAGAAGATGATGATGGAATACGTGAACGATAAATTCGCATTGAAGTGTCAAGCGATTAAGAGCAGCGACTATTACATGGGCTCTGGCAGCGGGTTGGACCAAGTTATGGAGAGTTTGGACAGTGTACAGTACTACAGCAAATCCTCGCCCAAGTGTGTGCAGGCTTTCGGGCTACAGACCACCGAGCACAACACGCGAATGGAGCGGTCCTCACCGTGTGGAGAACAAAACGCGAATTATGGTGTCCCCAAAACTGAAGAAGATACCTTGCACGTGGACCTCGGGAGGTCGATAGACAACTGTTGCAATCTGAGGGACTCGCCGGTAATGGCAGGTCAGGAGAAAACGGATTTGTACGAAATCAGTGACAAGTGTGACAGTAACGTATCGAGCAGTAAGAAGAGGCGGCACAGGACGACGTTCACGAGCGCACAGCTGGAGGAGTTGGAGAAGGTGTTTCAGAAAACTCATTACCCAGATGTTTATGTGAGAGAACAGCTGGCGATGAGAACGGAGCTAACCGAGGCCAGAGTGCAGATCCCCAACAACCTGTGGCCCAGCCCTGCTCCCAGTGGCTCAATGGTGTCTTCCTGCATGCTCCCCCGTGGATCTCCTCCCTGTGTAACCTCCTACTCCCACTCCCCCCGCTCCGCAGCCGACCACGGGTATGTGGGCTTCCCCAACCAGCAGAACCAGTTTGGACACGTCTCCATCAACAACTTTTTCACGGCTGACTCCCTCCTCACACCCTCACCCAACGGACACCCGTTCGAGGCCAAGCCTGAGTTCGAGAGACGCTCATCCAGCATCGCCGTGCTGCGGATGAAGGCCAAGGAACATGCGGCTAACATATCCTGGGCCATTTGATTGGGATTGTGAACTTTCTGTCCTCCCAAACGACTGACTCACAGCCACTCTAACTTTATCATTAATACTACGCACGATAATTATATCCCCAATGTTGTATGACTGACAGTGAACTGACTGTGACACCGGATTGATGGAAGAGGACTACCTTAAATTTGAAATGATGTAGGCCTAGATGCTGATCGCTGACTAGCCATCTGCTGGAGAGACATGAACAAACTGTGCCCCTTTTGGTCAAAGTTGAGAGGACAGAGATGATGAACTGAAAGGTTATTAAAGGTCGCCTCATCAAGGTCGAGCTGTGAGTGCATATCAGTTTAATCCACACAGGCGACACTTACTTTCAGGTTAACAACCGATGTGAAAGAGTCATGGAAACACTCCCTAAGTGGGCCCTTTTTGCCAATTATTATTCATAATGAGGCACAATGTGTTGCTGAAAACGTGGTTGTCTATGGCTTTTACACTCCACTTCAGTTTGTTCTACACTGTAGGACTTACAGTACAAGTGTTGAGGTGTTTATATTGTCATTCCCTGTGCTTTCTAATTCCATTGCCCCATGCAGCTCTGGACATACAGAGGACCTGAACAGAAATGAAATGGACTGACACACTAACATGTCTGTGTGCTTTGCAGCAAAGCTATTTAACCCCCATTAGCTCTGTTTGTGTTATATGGCACCAGCACAGGAAGCAGTTGGTATTTTTGTAATAAGGTAATAAAAACATATGTCGTGACATCTTTTTTTGATAGTATATTTTTTCTTTTATTGTATTTCCCTCGCTCATTATAGACTCGGGATGGCGATCCGGGTCGGCAGTACAGGGATGTAAGCAAAGTGTTAGGCTACACTACAATAGTGTGAGTGACGTATTAAAAAGTATAGTGTAATATGAACAATCTACAtggaaataataataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60868 lncRNA downstream 354828 50012509 ~ 50012738 (-) True G54615
TU60865 lncRNA downstream 357797 50009530 ~ 50009769 (-) True G54612
TU60843 lncRNA downstream 369163 49998185 ~ 49998403 (-) True G54590
TU60825 lncRNA downstream 380000 49987195 ~ 49987566 (-) True G54572
TU60789 lncRNA downstream 399018 49967643 ~ 49968548 (-) True G54536
TU61696 lncRNA upstream 12475 50387006 ~ 50387249 (-) True G55395
TU61717 lncRNA upstream 49090 50423621 ~ 50423840 (-) True G55416
TU61718 lncRNA upstream 49954 50424485 ~ 50424743 (-) True G55417
TU61864 lncRNA upstream 264382 50638913 ~ 50639142 (-) True G55553
TU61927 lncRNA upstream 355651 50730182 ~ 50733113 (-) True G55611
XM_021604073.2 mRNA downstream 97265 50260404 ~ 50270301 (-) True LOC110524441
XM_036979394.1 mRNA downstream 491074 49848378 ~ 49876492 (-) True LOC110524413
LOC110532387 mRNA downstream 544594 49763995 ~ 49822972 (-) True LOC110532387
NM_001165141.2 mRNA downstream 1138935 49224712 ~ 49228631 (-) True cbpa1
XM_036979383.1 mRNA downstream 1159049 49180132 ~ 49208517 (-) True LOC110524388
XM_036979494.1 mRNA upstream 344105 50718636 ~ 50720968 (-) False LOC110524488
XM_021604198.2 mRNA upstream 344105 50718636 ~ 50752172 (-) True LOC110524488
LOC110524514 mRNA upstream 403185 50777716 ~ 50785039 (-) False LOC110524514
XM_036979533.1 mRNA upstream 434182 50808713 ~ 50848386 (-) False LOC110532393
XM_036979530.1 mRNA upstream 434182 50808713 ~ 50849546 (-) False LOC110532393
TU59630 other downstream 1381649 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 2063430 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 2806357 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 2989023 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 3077885 47288939 ~ 47289681 (-) True G51285
TU61709 other upstream 37103 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 390832 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 403216 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 403216 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 403216 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile