RNA id: XM_021604114.2


Basic Information

Item Value
RNA id XM_021604114.2
length 6805
RNA type mRNA
GC content 0.52
exon number 33
gene id LOC110524456
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50530648 ~ 50592851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCGTGTGTCCCTCTCTCATCCAAAGAGCCTGGAAGCAAACGAGCCGCAAAAGCGACTGGATTTAACGCAACAGCATTGACGCTCCAACAGAATGCCGACAAAGAATGCATTCTAGCTGGAAATGCAAGGGGGCACCAAACAGGCACAGTATTTTATTGAAAATCTCTATTATGCTTATAATAATCTGAAATATGGCTGAAGTGAAGTCGAGGTGAGTTGCTCTGTTGCTCAGACAACTTGCTCTCAGGAGCTGCGCACTCATCTCCATCCCGTTTTGTCGGATGAAAATAAACGGACAGATAGCCTACACTCGTTTTTGTTCTTCTATCAATCGATAATCACTCAACTGTGGAATCATGTCAATGGGACAGGACGAAAGCTCAGTCCGGGTGGCTTTGAGGATCCGTCCTCAACTGGCACGGGAGAAGATTGAGGGATGTCACATCTGTACGTTTGTGACCCCTGGGGAGCCCCAGGTGATGCTGGGTAAAGACAAGGCGTTTACATACGACTATGTGTTCGACATGGACTCCTGTCAGGACAGCATCTATGCTGACTGCACTGAGAAACTGATCGAGGGCTGCTTCGAAGGATACAACGCCACCATCTTTGCCTACGGCCAGACGGGGTCAGGTAAGACGTACACCATGGGTACAGGGTTTGACGTGAACATCGGGGAGGAGGAGCTGGGCATTATTCCCCGGGCAGTCACCCACCTCTTCAGGGGCATCGAGCAGCGCCAGCAGGCTGCTAAAGAGCAGGGACGTCCCATGCCTGAGTTCAAGATCAACGCACAGTTCCTGGAGCTTTACAATGAGGAGGTGCTGGATCTGTTTGACTCTACGAGGGACCTGGAGGCTCGGACGCAGAAATCCCACATTAAGATCCACGAGGATGCTAATGGAGGAATCTACACAGTGGGGGTGACCACACGGACTGTAGCCTCCGAGGCAGAGaTGATGCAGTGTCTGAAGCTGGGTGCTCTATGTCGTACCACGGCCAGCACCCAGATGAATGTCCAGAGCTCCCGTTCTCATGCCATCTTCACCATTCACCTGTGCCAAGTCAGAGTCTGTGCATCCGACAATCAGGACAACAACGAGACGGACAACAAGGTTGCTAACGGCAACTCAGAGATGGAAGAGTATGAGACACTGACGGCCAAGTTTCACTTTGTGGACCTAGCCGGGTCAGAGAGACTGAAGAGAACAGGGGCGACCGGAGACCGAGCTAAGGAGGGAATCTCCATCAACTGTGGACTGCTTGCTCTTGGAAATGTAATCAGTGCTTTGGGAGACCGAAGCAAGCGATCCACACATGTGCCTTACAGAGACTCCAAACTCACCCGGCTTCTACAGGACTCCTTGGGTGGAAATAGcCAAACGATGATGATAGCGTGCATCAGCCCGTCTGACCGGGACTTTATGGAGACCCTGAATGCACTGAAGTATGCCAACAGAGCCAGGAACATTAAGAACAAGGTGATGGTGAACCAGGACAAGGCCTCCCAGCAGATCTCTGCTCTCAGGACAGAGATCGCCAGGCTACAGATGGAACTCATGGAGTACAggacgGGTAAGCGTATGGTGGGTGAGGACGGTATGGAGAGCATCAACGACATGTTCCATGAGAACAGCATGCTGCAGACAGAGAACAGCAACCTGAGGATCAGGGTCAAGGCCATGCAGGAGACCATTGACGCACAGAGGGCCAGACTCACACAGTACCTCAgtgaccaggccaaccaggtccTGGCCAGGGCAGGTGAAGGTGAGGGGAGTGAAGAGATTGGGAACATGATCCAGAGCTACATCAAAGAGATTGAGGATCTCAGAGCCAAACTCCTGGAGAGTGAATCTGTGAATGAGAACCTTCGTAAGAACCTGTCCCGTGTCTCTTCACGGCAGTCTTTTTACCCCGGAACCTTCTCCCCTGCCCTCCTGGCCCCCGAGAAGGAGGCCTCCGACATCATCGAGATGGCAAAGAAAGACCTGGAAAAACTcaagaagaaggagaggaagaagaagaagagTGTTGTCAAGGAGGAAGTCCCCGACAACGACCAAGACAATGGGACAGAAAAAGAGCTGACTGAGCGGTCCAATGAGGAGCCTGAGACGGAGGGGCAGGAGGGGAGTGACCACGAGGAAGAGgacgatgaggaagaggaggagatggatgTGGAGGAGAGCTCTGATGATTCAGACTCGGAATCAGATGAGAAAGAAAACTTCCAGGCGGACCTGGCCAACATTACATGTGAAATTGCCATCAAGCAGAAGCTGATCGACGAGCTGGAGAACAGCCAGAGGCGTCTGCACACGCTCAAGCAGCAGTACGAACAGAAACTGATGATGCTGCAGAGCAAGATCAGAGACACACAGCTGGAGAGGGACAAGGTGCTGCAGAACATGGGCTCGGTGGAGACGTGCAACGACGATAAGGCTAAGAAGATCAAGCAGGGGTATGAGAAGAAGCTAAGTCTCATGAATAAGGAGCTACAGAAGCTACAGTCAGCCCAGAAGGAACACACACGCCTCCTCAAGAACCAATCAAAGTACGAGACACAGCTCAAGAAGCTCCAACTGGACGTCACGGAGATGAAGAAGACAAAGGTTCGTCTGATGAAGCAGAtgaaggagcagcaggagaagaacagaaggacagagtccaggaggagcagagagatcgCCAGCCTCAGGAAGGACCAGCGCAAACAGGAGCACCAGCTGAAGCTACTGGAGGCCCAGAAGAGACAACAGGAGCTCATACTGCGTAGGAAGACTGAGGAGGTAACTGCACTGAGGAGGCAGGCCAGACCTATGTCTGGTAAGGTGACCAGCAGGAAGGTGAGTTTACCAGAGGCCCTCCAGGACTCCTCCCACCGACCCCCCTCAGGACGCTTGCAATCCTCTGGATCCACCGCACCTAACGGAACCAGgtccTACTACAGACGGTCAACGGGCATATATTCCACCAGAGTGGCCAAAGTGAAGTGGCAGTCTCTGGAGCGCCGTATCTCTGATGTCATCATGCAGAGGATGACCATATCCAACATGGAGGCCGACATGAACCGCCTGCTCAAGCAACGTGAGGAGCTGaccaagaggagggagaaggtgaCCAGAAAGAGGGACAGGCTGGCGGGGGAGGGGTCTGAGGAAGAGAAGGTGGTGTTTCCCCTCAACGAGGAAGTGGACACCCTGATGGCCAACATCGATTACATCAACGACAGCATCGCAGACTGCCAGGCCAACATTATGCAGATGGAGGAGGCCAAGGAGGAGGTTGACACGGTGGATGTGTCCGCAGTGATCAGCTCCTGCACCCTAACAGAAGCCCGTTTCCTGATGGACCACTTTATTTCTATGGCCATCAACAAGGGTCTGCAGGCAGCCCAGAAGGAGTCCCAGGTGAAGGTGATGGAGGGCAGGCTGAAGCAGACAGAGATCACCAGCGCCACTCAGAACCAGCTGCTGTTCCACATGCTGAAAGAGAAAGCAGAGTTTAACCCCGAACTGGATGCCCTGCTGGGGAATGCTCTACAAGAGAATGGGGATGACAGCAGCAGTGACGAATTCACCCAGAGTCCTGCAACAGACGGACACTCTCTGACATCAGATCTAATGAAACTCTGTGGAGAGGCCAAAACAAGGAGCAAGGCTCGTAGGAGAACCACCACTCAGATGGAGCTGCTCTACGCCAAAAGTGACTCCGTCCCTGACACGCCTTCTGCCGAtttctcctccccctgtctcccatTGGTTGAAACTCCAGAAGAGGGCAGAGATCCTGAGACCCCCATTGGCTCGTCAGTCAGGGACAGGGACTATATGGCTCATTCTCCCGGCTTGTCCTCTAAGATGGGCAGCATACCTGCCTCCTCCTCAGGGGCGGAAAAAAGAGTTCCAGAGCCCTCGCCGCTCTCTCGCAGGAAGACCTATGACAAGACACAATTGGCGGCTAAGGTCAAGGAGATCAAACAAGGGGTGATCAACCCAGTGCCTTCCTCAAAGGGCAGTCGGTCAGCAACACTGCAGTGTGTCCACGTGGCTGAGGGTCACACTAAAGCCGTGCTGTGTGTTGACTCTACCGATGACCTCCTCTTCACCGGCTCCAAAGACCGTACGTGTAAGGTGTGGAACCTAGTGACAGGTCAGGAGATCATGTCCCTGACAGGTCACCCTAACAATGTGGTGTCAGTCCGCTACAGCTCCAGCCTGGTCTTCACCGTCTCCACCTCCTACATCAAGGTCTGGGACATCCGAGACTCAGCCAAGTGCATCCGCACCCTCACGTCTTCTGGTCAGGTGACCCCGGGCGACGCCTGTGCGTCTAGCACCAACCGGACTGTCACCATCCCGGCAGGAGAGAACCAGATCAACCAGATCGCACTCAACCCCAGCGGCTCTGTCCTGTACGCCGCCGCCGGTAACTCTGTCAGAGTCTGGGACCTAAGAAGATTTGTATCCACAGGGAAGCTGACTGGTCACCTGGGTCCAGTCATGTGTCTGACTGTGGACCAGAGTGGGAACGGTCAGGATCTGGTAATCAGCGGATCCAAGGACCATTACATCaagCTGTTTGACGTGACAGAGGGGGCCCTGGGTGCTATCAGCCCCACACACAACTTTGAGCCTCCCCACTACGATGGCATCGAGTCCTTGGTGGTGCAGGGGGACGTCCTCTTCAGCGGCTCCAGGGACAACGGCATTAAGAAGTGGGACCTAGACCGCAAAGACTTACTGCAGCAAGTGCCCAACGCCCATCGTGACTGGGTGTGTGCCCTGGGTGTGGTGCCTGGCTCTCCGGCCCTGCTGAGCGGCTGTAGAGGAGGGGTGCTCAAGCTGTGGCACGCAGACACACTGGGGGCCCTTGGGGAACTCAAGGGCCACGAGAGCCCCATCAACGGCATCTCCACCAATAGCAGCCACCTCTTCACAGCATCTGATGATCGAACAGTGAAGATCTGGCGTGCCCGGGGCGGACTCGACAGCACCTTAGACACGACGGTGGACACAGCTGATGAGGTGGCCAGTAACTGAACATGGCCGGGACCTCCCACCGTGACCCTAAACCTGGGATGCTGCTGACTAGCACTTTGACCTCTGACCCTTAGCCTTGGAAACCACCCACAGCCCCCACATACTATAACCAAGACAACAGTCCCCAAGAATGGAATCTTATCTCAGCAAAAGTAGCTGTAGTCGTTTTCCAGAATGAGATACTGTAGATTTATCCCTAGAAAAATGTCTCCCTAGCTAAATGTATCTAGTCTAACCTGTGTGGCCATAGCACTGGCCTGTGCAGAATAAACCCTATTTTTGCTTCATAGACATCCTTCCGTCTCCGCTCGTATCAAGTATTGAgtgagcccacacacacacacacacacacaaacacaaacacaaatagaGGCAGATCTTGAGTGTTTTTCTGTGCTGGGGGAGTGGTGTGGAAATTAGATGAGAGGAAAGTAAAGACCGGGCTTTGTCGCAGGCCTTCAAGACCCGGACCTGGTTCTCGGACCAGACCCGGACCAGCAAAGGAAGAGAAGCCTTTCTTCTGCATTGTAAGCAGAACCACTGTCCTCATCCCTGCTGTCCCTTACGTGATATCAACGTGGCTTTACGTGAACTGACACCCACTTAAGTCGCTCGGTTTTGATGTTCTTTTGCTTTGAATTCAGCACCCGCTTTCCATGGGTGACCAAATCATGAAACTTCTCTTGTACTTTACCTGTGAACTGGATACTGTACATTAACTAACACTACTCTTGTAGCCACTAGCAAAACACCTTCAGTCACCTCTCTGCTTCCTTAGTCTTTACACTTAGTCCTTCCTTACTCTCTATGTGCAAATACAATGTCTCTTTGAGGATACACTGACTCTCTTCACTCGTCCACTACTCGTCATTTAGCAATTGTTTGATTTTCCACTTGATGCTATTCCCTCTAATAAGTTAATAACTAACCTAATGCCCTTGCTGCTAAGTTGTTTGCTCACCTATGACCCATAGAGGGCTTCTGTTCTGGACTCCAGGTGAGATACACTTGGTAACCGTAGTTACATACTTTATATAAGAGTCTGaagtgaggggaagagagggagcctTTTATCTGTGCCTGTACTGTAAAGCTCTCCCAATCCTGGTCTGGGAAGACCTCTCTGTACGGTGGTTTATCGTGTTTGTGTCAGTTTTGCTGTACATTTCAACTGGCCTATTTGTGATTGGTGTGAGCTGAACTAACTGTCAAATTATGTATCGGATCCACTGTCTGCTGGGACTATTGAATGTTAAAGTAGTAGGAGCAGCAGCCAACACAATATGTGTATACGTAAACAGTATTATACAAAGAAATAAACTGAAGGTTTGTTTTGTTGATCACCAAATTGCATTCCCGAATGGGTAACAAATGACCAGAATTGGGAGACTGTGTTCTAACAGCACTCATCTCTTTTGAACAGAACCCCTCTCCCTGGCCCTGAGTCAGCCTGTTATGTTTCCTGGggatgcatccaaaatggcaccctattgcatagtgcactacatttgaccaggacccatggaTGCTGTTCAGaagttgtgcactataaagggaacagggtgccattttcaGATGCAGCCCTGCTCTGATTTTATTGAATTGTTCTGTTGAAAGAAGCTGTATGTATTCAAACCAGTCCTGGGTTCCCCTCTGGAGTTTTGCTGTAGATGTCATTCCCTAAAATGGCTGACTCTGTACTGTAGCAGATCTAATGTCAGATGCCTGGCGAAATAAATGTCATCTGTCAAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61134 lncRNA upstream 72968 50455574 ~ 50457681 (+) True LOC110524453
TU61176 lncRNA upstream 101052 50429239 ~ 50429597 (+) True G54907
TU61175 lncRNA upstream 101744 50428578 ~ 50428905 (+) True G54906
TU61171 lncRNA upstream 105610 50424474 ~ 50425039 (+) True G54902
TU61170 lncRNA upstream 106394 50423931 ~ 50424255 (+) True G54901
TU61299 lncRNA downstream 47709 50640560 ~ 50640778 (+) True G55023
TU61262 lncRNA downstream 80970 50673821 ~ 50675495 (+) True LOC110524482
TU61260 lncRNA downstream 84487 50677338 ~ 50678112 (+) True G54987
TU61336 lncRNA downstream 108746 50701597 ~ 50774393 (+) True G55058
TU61349 lncRNA downstream 125831 50718682 ~ 50720223 (+) True G55070
XM_021604100.2 mRNA upstream 20858 50455556 ~ 50509791 (+) False LOC110524453
XM_021604059.2 mRNA upstream 299584 50226356 ~ 50231065 (+) True LOC110524434
XR_005052021.1 mRNA upstream 447109 50037523 ~ 50083540 (+) False LOC118964841
XR_005052020.1 mRNA upstream 681670 49847620 ~ 49848979 (+) True LOC118964840
XR_005052013.1 mRNA upstream 696646 49823919 ~ 49834003 (+) True LOC110524421
XM_021604185.2 mRNA downstream 7784 50600635 ~ 50674175 (+) False LOC110524482
XM_021604210.2 mRNA downstream 199345 50792196 ~ 50800380 (+) False LOC110524496
XM_021604218.2 mRNA downstream 199346 50792197 ~ 50800380 (+) False LOC110524496
XM_021604227.2 mRNA downstream 199346 50792197 ~ 50800380 (+) False LOC110524496
XM_021604236.2 mRNA downstream 199347 50792198 ~ 50800380 (+) True LOC110524496
TU60888 other upstream 446653 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 1636737 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2147392 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 2505691 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3271751 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 856971 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 3073364 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 3395289 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 3451998 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 4128337 54721188 ~ 54721463 (+) True G59963

Expression Profile