RNA id: XM_021604185.2


Basic Information

Item Value
RNA id XM_021604185.2
length 2541
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110524482
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50600635 ~ 50675495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATcgtgttttttctttatttttgtaattgTGTAACATTTCCCAAAGCTGAGATCTGTACATGTCTTGGCTGCACTCCTCCCGGGCGTCGCGCCCTCCGCACTATCACCCATTTTAGCCTGGGTCTATACCTCGCTCTCAACTCTGCATACTAGCACGAGCTGAATCTTTCAACGGTTACACATGACGCTGGGCTGTTATGGGCGACGCTCCTCTTGCAGCTGGCTGAGCGACACGCCTCCCGAAGCCTCATGCAACAGCGACCCTAAGCAGCGCACCGTTTTTAAcggtttctttctttctttcatgtgACCGAAGAAGGCCCGTTTAACGGGAGATTTCGACGATGAGTAGCTTCATGAATATGGCGTGTATTGGAGACTTTGACCCATTCACCGCTGCCATTCCCGCCACCAGAGTTGAGCTCACGGTGTCGTGTAGAAATCTCCTGGACAGAGACACATTCTCCAAATCAGACCCAATTTGTGTGCTGTATACACAAGGAATCGCCAACAGGGAATGGAGAGAGTTTAGTCGGACAGAGATGATAAACAACACCCTGAATCCAGACTTTGTCCGGAAATTCACCCTGGACTATTTCTTTGAAGAGAGACAGAATCTACGATTTGACCTGTACGACCTCGACTCGAAGAGCGACAACCTGTCTAAACATgacttcCTTGGCCAGGCATTCTGTACCCTGGGGGAGGTGGTGGGCTCCATGGGAAGCTGCGTGGAAAAACCTCTCATTGGGATTCCAGGGAAGAAGTGTGGTACCATCAAAGTGAGAGCAGAGGAGCTGAGCAATTGCAGGGAGTCAGTGATGCTGCAATTCTGTGGGAACAAGTTGGACAAGAAAGACTTCTTTGGGAAATCGGATCCTTTTCTGGTCTTCTACCGCAGTAACGAAGACGGATCATTTACTATCTGCCATAAGACCGAGGTGGTGAAGAACACTCTGGACCCAGTGTGGCAGGCCTTCAAGATCCCTGTCAAGGCCCTGTGCAACGGAGACTATGACAGgaGCATAAAAGTGGAGGTGTATGATTGGGACCGAGATGGAGGCCATGACTTCATTGGGGAATTCAATACCAGCTACAGAGAGATGTCAAGAGGCCAGTCACAGTTTCACAGCTACGAGGTGGTCAATCCAAAGAAGAAaggcaagaagaagaagaaatacCTCAACTCGGGAACAGTAACCCTTCTGTCCTGCCTGGTGGACATGGAGCTCACCTTCCTGGATTACATTAAAGGAGGGACTCAGATTAGTTTCACAGTGGCAATTGATTTCACAGCATCAAATGGCAACCCCTCCCAGCCCACCTCTCTACACTACATGAGTCCGTACCAGCTGAATGCCTACGCCATGGCTCTGAGAGCTGTAGGGGAGATTATCCAGGACTACGACAGTGACAAGATGTTCCCTGCACTGGGCTTCGGAGCTAAACTGCCCCCGGACGGACGGGTCTCGCACGAGTTCGCTCTGaATGGGAACCCCCAGAATCCGTACTGCAGTGGGATAGAGGGGGTGATGGAGGCTTACTACCAAAGCCTTAAGTCTGTTCGACTCTATGGTCCCACACATTTCTCCCCTGTCATTAACCACGTGGCCAGGTATGCACAATCAGTCAAAGATGGCTCCCAGTACTTCATCCTCCTTATCATCTCGGACGGCGTCATCACCGACATGGCCCAGACCAAGGAGTCCATCGTAAACGCAGCTACTTTGCCCATGTCAATTATAATTGTCGGAGTTGGACCAGCAGAATTTAATGAAATGATTGAGCTTgatggagatgaagagaggatcTCATCCCAAGGGAGGTTCGCCGAGAGAGACATTGTTCAGTTTGTTCCGTTCCGTGACTACATCGACCGCAGGGGGAACCACATTCTGAGTATGGCCCGTCTGGCCAAGGAGGTCCTGGCTGAGATCCCTGACCAGTTCCTCTCCTACATGAGAACCAGGTGCATCAAACCAGGCCTCTGCCCCCCTGCCTACAACCCTGCCCCCGCCGTGCACCCCCTCCTCACCCGACGGGTCAGCCGAATCTGAGGGGTAAGCCTCCTCCGGAGCCTCTTCCTTTCTTGCTTCTTCTTCCTCACTGGAGTTTGACAATGGCGGTCCGAAGAAGCCAACCGCCATTTCCACTCTCTTGTTGCACTTTTGTGAATTCTGACTTCCTCTCTGCAGAAAGGACAGCAAGGCATTTTGCTTCTATTTAAAGTGTCCCTCAGGAAGGACTTCCCATGAGATGTCAGAGGACACAGTTTACTGGTCTGACCCAGGAAGTGGGAGAGTGCCTAGAACTGACCAACCAGGAGCAGCATCCAATCTGTGAAGAACCATTCAGAAGTACATTTCTGTCTCTTATTTCTATGCCCTACTCTTCCTCTCAACCCCACTTTTGTCTCACCAACGGTCTCTTTCTAAATGTTTACAAAGTtaaggatgaagaggaggatttGTACttgtggatatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactcgtttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61134 lncRNA upstream 142954 50455574 ~ 50457681 (+) True LOC110524453
TU61176 lncRNA upstream 171038 50429239 ~ 50429597 (+) True G54907
TU61175 lncRNA upstream 171730 50428578 ~ 50428905 (+) True G54906
TU61171 lncRNA upstream 175596 50424474 ~ 50425039 (+) True G54902
TU61170 lncRNA upstream 176380 50423931 ~ 50424255 (+) True G54901
TU61260 lncRNA downstream 3163 50677338 ~ 50678112 (+) True G54987
TU61336 lncRNA downstream 27422 50701597 ~ 50774393 (+) True G55058
TU61349 lncRNA downstream 44507 50718682 ~ 50720223 (+) True G55070
TU61386 lncRNA downstream 103735 50777910 ~ 50779569 (+) True G55101
TU61405 lncRNA downstream 135971 50810146 ~ 50817448 (+) True G55115
XM_021604143.2 mRNA upstream 7784 50530648 ~ 50592851 (+) False LOC110524456
XM_036979468.1 mRNA upstream 7784 50530648 ~ 50592851 (+) False LOC110524456
XM_021604114.2 mRNA upstream 7784 50530649 ~ 50592851 (+) False LOC110524456
XM_036979447.1 mRNA upstream 7784 50530649 ~ 50592851 (+) False LOC110524456
XM_036979454.1 mRNA upstream 7784 50530649 ~ 50592851 (+) False LOC110524456
XM_021604210.2 mRNA downstream 118021 50792196 ~ 50800380 (+) False LOC110524496
XM_021604218.2 mRNA downstream 118022 50792197 ~ 50800380 (+) False LOC110524496
XM_021604227.2 mRNA downstream 118022 50792197 ~ 50800380 (+) False LOC110524496
XM_021604236.2 mRNA downstream 118023 50792198 ~ 50800380 (+) True LOC110524496
XM_036979545.1 mRNA downstream 182405 50856580 ~ 50871347 (+) False c1h11orf49
TU60888 other upstream 516639 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 1706723 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2217378 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 2575677 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3341737 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 775647 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 2992040 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 3313965 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 3370674 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 4047013 54721188 ~ 54721463 (+) True G59963

Expression Profile