RNA id: LOC110524514


Basic Information

Item Value
RNA id LOC110524514
length 4404
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110524514
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50777716 ~ 50792069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagtgatgcctctagcactgagatgcagtgccttagaccgctgcgccactcgggagaccatCCTGAGTATTTCCCATCCTACTTTAGCTGAGAAAGGTTGTAACGTTTTCTGTCTGCAAGCCAAAATGTGTCCCATGTACAGTGTATTGCATTGGGGACTATGGAGATGTTGGAGAACAAAGTGTTGCTGGGTATGTACGACACACTCCCCCTCCAAAAATACACACATTTGGTTAGTAGAGAACCTACTGAGTACTTTCAACCCCAGTTTAGTATTAGACAGGTAGAAAAGTTCTCTCTACAGCCCAATATTCTCAAGTTGTGTTTCCCGGTGAAAGGAAAAAGATGGCGGAAGCGGACGATGAAGAGGATTCTGAATCTAAATGGCGGTAGAATCAAGGAGAATTTGAGTATTGTCCAAAATAATGGAAAATGGAGCAAAGTAGTGTACAGTGAAGAGAATGCCCCTCCGTATCTAATAGGAGTACGGTTTGTTAGTGAGCAGCAGTTGAGCAGATTACCAATCttgaaaaaaacatttgagataTCCAAACTGGTGGAGAGAGTGCTGGTGGAGGGGAACAAGGCAGTTGATGTACTGGCTAAACAACCACTTAGTAGTGGCGATGTTGATATTGTTATATAGTATATAGTTTCAATGAGCAAGGCAGAGGCGAAAAGCCTGATATGGACAGAGATGGCTGGAGTAGAGGTACTAAGGGCAGGCATTTATTTAAAGTCCAGAGGAAAGTCGGGGAGGGCGGTAGgaagggacagaagagagggTATTTTTACAAAGTgaagggtgggacacagccaaTTGAATAAGACCTTAAATGTGATGGAAAGCGTCCAACAGGAAAGTGTGATTATTGCCAGGAAACAGACCATGGAGCATGTACTGCATTGCTACAGTGTAAGCAgtatcagagggaaagagagaggctgagataTAGTATGAGGGAGAAGGGTACACAGGAAATTGGTTTTAAAAGTATATTGAGTAGAACGTCATTAGATATAGTCTCAAATATTTTGTTATCTTTTTAAAGAGCAACGGGGTTGGCAGGTAGGATTTcgtttctccctgtctctggccCGCAcgccagtacagtaggtggcggtaaatGCACCAAAACGTTGAATGCCAACCGCCGATAAAACCCAACCAAAGAAGAGGGAGAGCGTGCTGGGTAAAGTGAAGGCTGTCATGTTTGGATTGTTTTCTGCTTCTGCGGAACAGTGCGTTGCGTCTCCCTCGATTTGATGAGTCGTGTGCGTCTCCTTGGAACAGGGCGCCCCTCAAGGGGGTTATATCTGGTGTCTCGTCGTAAGTCGATTAAAAATATTTCTGGAGGATTGATGCACGTCGAATGAATCGTGTGGTGAATGGTGAAAACGTGAAGAGTATCTGTTCATTTGTTTTTTGATATGGAGTCTCTCTACTCAAGTGCAGTTGGGGTATATAAACTACAGTCAGAGCATTTATCCCAAGACCAATGCATTGTGATCATTGTAAAGTTGTTGGTCACGTTTCAAGTGTTTGTAGAAAGGAGATGTCCAAGTTGTGGAAAATATCATGTAATGTGTTTTAAAAGTGGGGAAAATGTGACATTTTGCAATTGTGGTGGGAACCATGAAGCTACGTGTTTTGATTCCCCAGCATGGATGACAGAGAATGAGGTGGACAAAGTCAGGGCTATCCAGAGCATATCATATGAGCAACTGTTAAAAGGGTTGAGGGTTTGAATGGTTCACTTGAAGAGGCAATGGTGGTGGATAGGCCTTTACTGCAGGCTGCAGGGGTTGCTTTTCACCAGCAGGATCCTGACATTTTAAAGGTTGGGAAGGTGGACTTGTTGGCCTTTTCTAGCTATGGTGATAaatggcactgccaaggtggagagaaggtccaGGAAGATATAAATCATTGTGGAATCGGTGGAGCGGTTCCTGGGGCTGAAAGCTTTTTCGCGACGGAGTTACATGGAATATTGTCAAAAGCCGTGTCACCCTCTTGAGAAGGGAGATATGGACAATTGGGAAAAGTGGGAGTTTTATTTTGTCTGATTATTTTAGTGTCCCAATCACGTATGGATTTTATTTTTACCTTGTTTTGGTTTCAACCCGTCCAGATGGTGGCGGCAATACACCTTTTTGGGTCCGCCATAAAACCCACAGAAGAAACATTGTTTGTGCTGCTGGCAGACTACTAGTGAAGAAGAGAACGTTTGTTTACAGAAGTAGCTAGCCCGGGAAACGCTAGCTGTCGTTAAAGTTTGTTAGCATAATTTACTTAAGTTAAATATCGTTTTGCTAAATCATGACAGCATCATGAAGGTAAAAGATCTCATAGAAATCGAACAGACGCGGTCTAATAGAGCAAGAAAAAGCAAACTAAGCTAAGAGATgtgctagctaagttagctagcggAGCTTGTTTATCATTCAACCGTCTGTTTGCGTGgtacagctaacgttagcttgataACTTAACTGTTTGGGTTTAGGTCTCCTGAGGTGGTGAATTGAAGCCATAGGATAACCGACACGATGGGGGCCGAGCAAAGTGGTGATTCTGAGCACAAGCACTCTTGACTACAGCACCTCGGTTGTGCCCTCACCAGCAAAGCAGAAGGCTAAAATGGATGACATTGTGGTGGTGGCCCATGGGACATTGTCATTGCGCAACATCCACAATGACCCTGATGTCATCAAGCTTCTGGAAATCCCAACTTTTCAGCCATTGTTGAAAGGTGTGCTGAGTGGCCAGGCATCCCCCAGCAGTGTGTGTCTGGAGCGGCTGGACTATGCCCAGGTGCTGCAGCTGTGCATCCGCTACCAGGACCACCTACACCAGTGTTCTGAGGCCGTGGCCTTCGACCAGAACGCCCTGGTCAAGGGGATCAAAGAGATGGACATATCGGTGGAGACTTTGTTCAGCATCATTGCAGGACCTTCAGAAGCGCTATGGCAAGTACACTGAGCAGATCCAGAAGGTGAACGAGATGTCCATGATCTTGCGGCGTATCCAGATGGGCATCGACCAGACCATCCCTCTGATGGAGAGGCTCAACAACCTGCTGCCGGAGAGCGAATGCCTGGAGCCCGAATGCCTGGAACCCTTCAGCATGAGGCCGGAGGGGGACGCTGCAGccaagtaatagtagtagtagcagcagcagcattgcCGGGGTACGCTGATACACTCACTGTCATGGACCTCTAGTCTTACCTCCCATGCCACTGCCAATCACCACTCCAGAGAGACTTCTGAAAGCTCTTTATTGAACcgtttagagaaagagagagggagggagtgagcaAAAGAAAGAATGCTGCCCCACCAGCTCCCCAAGCCACCCTGAACATCCACAACTCACCATCCCACCAGGCCTGGACATTTAGCTCAGCCCCTCACCTTAAGCCATAAACACTTCCCACCCCATCCAGCAGAAGCAGTGGGGTACAGGGACAGCTGCACCCCACACTGGGATTTAACATGTCAGTGAATGTTAACAATCTTCAGTCACTGAATTGGAAGACTGCAAAATAGAAGTTTACATGATGATGCACTGAAGGGAACCTTCTTGGACTACTGGTACTTTGGCGACAAAATGACTTCCAAAAATGACTTCATCTCTAGAAGTGATATTGGTCAAAGATGAGCTCAGAAGACTCCCATAAAAGGAACTAACTTATTAGCTAATAAGCTTTAGCTTATTATTCAGCTCTAGCAACAGACCTATAGATTCTGTGCAGCATGTGAGAAACCTAGTAGTTTCAAATTTGGCATATTGTGCAAATTAGGCCTACACATAGCTACAGCTTTGTGGAAGATAATCTATGGATATCACTTCAAACCATCGATAGTAATCTGCTTGAATTTTGTTAACGGTATGAGTGTTAGATGCTTGAATATTTTGGTTTCTCTGAGTTTCAAATGGTTTACATAACAAAGATGTGTATTTAGGAAAGGAATTTGAATCATTTGAATTTCTTGCTAAATGTATAAAGGTGCTTATACTGTGCTGTTTAGATACTTACCCTCTCAATTGGATGTGATGTTTGGTTATAGGATATTGACATTGGGTGTTATCACAGAGTCGGGTCCAAatttattggcacccttgataaattGCTCGGAGAAAGAGATTTTGTCAGtactctagcaccctccccttgcgaGGATAAAGGCACGGAGCCTTTTTGTCAATTTTTTTTTACGAGATTGAAGAACACATTTGGAGAGATCTTAAACCTTTCCTCCATAAAGAATtgttccagatccttgatattctTCATGTGCTCTTCTGGActtccctcttcaattcaaacaacagattttcaatagggttcaagtccggagactgagagttttgttttcaataaaaaatatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61594 lncRNA downstream 32262 50744255 ~ 50745454 (-) True G55298
TU61927 lncRNA downstream 44603 50730182 ~ 50733113 (-) True G55611
TU61864 lncRNA downstream 138574 50638913 ~ 50639142 (-) True G55553
TU61718 lncRNA downstream 352973 50424485 ~ 50424743 (-) True G55417
TU61717 lncRNA downstream 353876 50423621 ~ 50423840 (-) True G55416
TU61990 lncRNA upstream 67167 50852206 ~ 50852412 (-) True G55665
TU62083 lncRNA upstream 105385 50890424 ~ 50891828 (-) True G55753
TU62085 lncRNA upstream 108278 50893317 ~ 50896831 (-) True G55755
TU62170 lncRNA upstream 208646 50993685 ~ 50993951 (-) True G55840
TU62335 lncRNA upstream 256392 51041431 ~ 51144424 (-) True zgc:101566
XM_021604198.2 mRNA downstream 25544 50718636 ~ 50752172 (-) True LOC110524488
XM_036979494.1 mRNA downstream 56748 50718636 ~ 50720968 (-) False LOC110524488
XM_036979433.1 mRNA downstream 403185 50367566 ~ 50374531 (-) False LOC110524445
XM_021604086.2 mRNA downstream 403185 50367574 ~ 50374531 (-) True LOC110524445
XM_021604073.2 mRNA downstream 507415 50260404 ~ 50270301 (-) True LOC110524441
XM_036979533.1 mRNA upstream 23674 50808713 ~ 50848386 (-) False LOC110532393
XM_036979530.1 mRNA upstream 23674 50808713 ~ 50849546 (-) False LOC110532393
XM_036979523.1 mRNA upstream 23674 50808713 ~ 50850423 (-) False LOC110532393
XM_036979517.1 mRNA upstream 23674 50808713 ~ 50850668 (-) True LOC110532393
XM_021604286.2 mRNA upstream 86436 50871475 ~ 50888496 (-) True mapk8ip1a
TU61943 other downstream 10285 50765363 ~ 50767431 (-) True G55627
TU61709 other downstream 365588 50411634 ~ 50412128 (-) True G55408
TU59630 other downstream 1791799 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 2473580 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 3216507 47542376 ~ 47561209 (-) True LOC110524104
TU62721 other upstream 615688 51400727 ~ 51404343 (-) False G56372
TU63128 other upstream 961578 51746617 ~ 51747220 (-) True G56764
TU64168 other upstream 1710859 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 2354419 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 2549685 53334724 ~ 53338387 (-) False LOC110525078

Expression Profile