RNA id: XM_021604227.2


Basic Information

Item Value
RNA id XM_021604227.2
length 1672
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110524496
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50792196 ~ 50800380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGGAGTTATACATTTGGTAGCCAATCACACACGACAACACAGTGTCTTTAAAACATTGGCGGTCGAAGTAGACGACAGTGTAACGTTTGTTTTCAGAATTATCGTAATAACGTTTTGCTTTATGTCACATACATCAGTATGATGCAGAATAAGGAGAATTGTGATCCTAAAGGGCTACACAGACCGCGAGTTCAGATGCCCTCTGCACCAGACGCTACAGACAAAAAAGCAATTACAGGTCCTGGGAAAGAGCTTGCCACGTCTTCATCCAGTGCAGCTCTAGCAAACAGGAAATTCACCATCAATGACTTTGACATTGGGCGGCCACTCGGAAAAGGCAAGTTTGGGAACGTTTACCTGGCCCGGGATAAGAAGCTGGACTTCATCGTGGCGCTGAAGGTGCTCTTCAAGTctcagatggagaaagagggcgTGGAGCACCAGCTCAGGAGGGAGATTGAGATTCAGTCCCACCTTAGACACCCCAACATCCTGCACTTCTACAACTACTTTCATGACCGCACCAGGGTCTTCCTAATCCTGGAGTACGCGCCGCGGGGGGAGATGTACAAAGAGCTGCAGAAATGTGGTCGCTTTGATGACCAGCGCACTGCTACATACATGGAGGAGTTGTCTGATGCGCTGCTGTACTGCCATGAGAGAAAGGTGATCCATCGGGACATCAAGCCTGAGAACCTGCTGCTGGGATTCCGGGGAGAGCTGAAGATAGCAGACTTTGGCTGGTCTGTCCacgcaccatccctaagGCGCCATACAATGTGTGGAACACTGGACTACCTGCCCCCAGAGATGATTGAGGGAAAGCCCCACGATGAGAAGGTGGACTTGTGGTGCATCGGGGTGCTCTGCTATGAGTGCCTAGTTGGCAACCCCCCTTTTGAAACCGCCAGCAACTCTGAAACGTACAAGCGCATCACAAAGGTGGACCTGCAGTTCCCCAAAGTGGTGTCCGACGGGGCTAGGGACCTGATCTCTAAGCTGCTCCGCCACAGCCCCTCCAAGCGGCTGCCGCTGCGGAATGTAATTGACCACCCATGGGTGAAAAACAACTCACGGCGGGTCCTACCTCCTGCCTTTCCTCTCAAGAAACCCTAACGTCAGTTGTTCCAGCCTGTTACAAACTGCTAAGAAACCCTAAAAGCACCAAAGAGACAAATCTATTCACGGTTCCAGTCTGCCTTCTACCTGAGTGGGGGACTATGGTGATatgttttgtttctttttttcctTCTCCACTTAAGGgtttcacactttttttgttacctGGGCAATCTTCATCCACAGggtttagagtggtcttttagctTCTAATTTCTCTGATTTCTAagatctgaggggggggggggggggggtttgggaaAACCTGAACTAGATTACTGTCATTTTTATATTTCAATTTACACCAAGAACAGGTTAAGGCTGCTCTCTACTGGTAGAAATTAGGAAGGCCATTGAGAATAAGGATGATTGCTTTtataattcttaaatggatttCAAGAAGAGGATGTCTGTCTACTAACTAAAGTATTTTCAGTTTTTGTACAGCATGTGTATATAACGGCATCTACAAGCAAAGTTTATGTATCTGAAATTTCCTTGTGCAACTGTTTTGAAATAAAAATCATCCCAACTGTGAGGGAACCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61386 lncRNA upstream 12628 50777910 ~ 50779569 (+) True G55101
TU61336 lncRNA upstream 17804 50701597 ~ 50774393 (+) True G55058
TU61349 lncRNA upstream 71974 50718682 ~ 50720223 (+) True G55070
TU61260 lncRNA upstream 114085 50677338 ~ 50678112 (+) True G54987
TU61262 lncRNA upstream 116702 50673821 ~ 50675495 (+) True LOC110524482
TU61405 lncRNA downstream 9766 50810146 ~ 50817448 (+) True G55115
TU61989 lncRNA downstream 51901 50852281 ~ 50852604 (+) True G55664
TU62017 lncRNA downstream 90384 50890764 ~ 50891884 (+) True G55690
TU62060 lncRNA downstream 151353 50951733 ~ 50951962 (+) True G55731
TU62238 lncRNA downstream 292352 51092732 ~ 51094575 (+) True G55908
XM_021604185.2 mRNA upstream 118022 50600635 ~ 50674175 (+) False LOC110524482
XM_036979454.1 mRNA upstream 199346 50530649 ~ 50592851 (+) False LOC110524456
XM_036979545.1 mRNA downstream 56200 50856580 ~ 50871347 (+) False c1h11orf49
XM_021604300.2 mRNA downstream 56202 50856582 ~ 50871347 (+) True c1h11orf49
XR_005051360.1 mRNA downstream 191603 50991983 ~ 50993119 (+) True LOC118964313
XM_021604316.2 mRNA downstream 271316 51071696 ~ 51075445 (+) True LOC110524544
XR_005051364.1 mRNA downstream 354127 51154507 ~ 51155396 (+) True LOC118964319
TU60888 other upstream 708201 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 1898285 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2408940 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 2767239 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3533299 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 649442 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 2865835 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 3187760 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 3244469 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3920808 54721188 ~ 54721463 (+) True G59963

Expression Profile