RNA id: XM_021604316.2


Basic Information

Item Value
RNA id XM_021604316.2
length 2607
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110524544
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51071696 ~ 51075445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTCTCTTTTATGCTAGACCTAATCGATGACTTGCATATCCCCTGTCTTCATACTGATTGTACATCTCAGTATTTAACAAATATATTAGAACATAGTTTCAAATAGCCAAGTATTTTATAGGAAATTATTTAAATATAACTTTAAATACTTAAAATTATTTGAAAATAGTACTCCAATGCATATAAAATAAGTATTTTAAATACAAACATGTATGCATTTGAAGCAAGATCTGCTGACCTCCAACTCCTCCATGTGTATGTGTCTACATCGTAATTTAGGCtgtattctgtttttttttttaaatagtattattattattcgtgACCAAGTCGTGTGCTTTGCCAGGGGCTGTGGGTAGGAGGGGAGATGTAGGGGAGGTTTGGGGTAGTCCAGAACGGGCTCTGGTTGGCACACCTCACACAAAGCCACACCACCAAGCCATAGCCTAGGCTACAACACGCACATTAGTCAAGGCAATCTGGAATATACGGCGGCGGGCTTTGCGAAGGCTGCGGTTGCAGCATCCTTCTCGAATCTATTTTACCCTGTTGGAGTTCAATTGTCTTATTCTGCCTGGCGCTTCGACTAATTTCTCTTATCATGATATTTTCCTTATTTAACACTGACTGATTGTGACTCTTCTATCTGCGAGAACAGTTTCTCTCGATGTGCTACTCAGATGTACGGGGGAAGAAGACAGAGAAGCTGCCCTTCAAGAATGTTTAGTCCTAAAATACCAGATTTTTGTGACGACATTTGAAACCGTTGCATTGCTTTTCTATGGTGTTTTTCACGAGCACCTGCCTTTGCCCACTATGAATTTATGAGGATCTGaacagactgtatcatctatctAAATGAATGAATTCAGCCATGCAATGTTCCTGGAAGGCTGTGATTCTGCTAGCCTTACTGTCCATAGCGATCCAGTACACAGCCATCAGGACATTCACAGCCAAGCCATTCCAGATGTGTCCAGTGACAGCCTCAAACAATCTGAACTGCGGCATGCTGTGGCAGGATGCGGTGGACTCGTCCTTTGACCAGCGGATCTGTGACGACTTCCTTTACTTCACCTCCAACGTCTCCAGAAAAACACACGTTCTCATCCTGGCCACGACCCGCAGCGGCAGCTCCTTCGTGGGTCAGCTGTTCAACCAGCACCAGGATGTGTTTTATCTGTTTGAGCCGCTCTACCACGTCCAGACCACCTTGCTCCCCCGCCTGTcccacagcaggacagcaggcgACACCAGGGTGATGCTGGGGGCCAGCAGGGACCTGCTCCGGAGCCTCTACGACTGTGACCTTtacttcctggagagctacatcAAACCCCAGCCGGCCAAtcacagcacagacaagctgttCCGGAGGGGAGCAAGTAAGGCTCTTTGCTCCCTGCCCGTCTGCGACGCCTTTAGTCCTGGAGAGTTGAACATTGATGAAGGAGAGTGCGTCAGGAGGTGTGGCGGTCTCAACATGACGCTGGCGTCGGACACCTGCCGTGAGAGGCGCCATGTGGCCATCAAGACGGTGAGGATACCGGAGGTGAGTGACCTCAGGGCTCTGGTGGAGGACCCTAGGCTCAACCTCAAGGTGATCCAGCTGGTCAGGGACCCCCGAGGGATCCTGGCCTCCCGCATCGAGACCTTCAGGGACACCTATAGACTCTGGAGGATCTGGAAGGCCACTGGGAGGAGGCCCTACAACCTGGACCTCACCCAGCTCACCATGGTCTGTGAGGACTTCCTGGGTTCTGTGACAACGGGCCTCAGCAGGCCCCCCTGGCTCAAAGGGAGGTACATGTTGGTCAGGTATGAGGACCTGGCCAGGAACCCTCTCCAGAAGACCAAGGAGATCTATGAATACCTGGGTCTGATCATGGACAAGAACGTAGGCGACTGGATCCAGAACAACACCAGGGGAAGCAACGATCTGTCCGCCAAGCATAAATACGGCACTGTTCGGGACTCAGCTGCCAATGCGGAAAGCTGGAGGCTCAAATTGTCTTATGACATGGTTGATTACACACAGACTGTGTGTCAGCAAGTTCTACAGGAGCTTGGTTATAAGACTGTCAGTTCCCCTGAGGAGCTGAAAAATCTGTCTCTGACTCTCATCGAGGACAAAACTTTTTTACCTTTTTTGTAGCAAAGCAAGGTCTATCACGACAACTATTTTTGATATATTTATATTGTTGCCTTAATTTCTTCTCAGATTTGCACTAAACCTCAGAAACCTTGAAGACTCCTGTGGTAAGATTCAAGTCAAGACATTCAGAAGAGCACAAAAAACATAATGTAGGAATGCTCTTTGGAGATATCAGTATCAATGTTTTAGCGATATCGAAGAGACAGTAAATAATGTTAGGTTAATTGACATGAACAAACTTACAGTAAAGCACCATCCTACTTAAGATCCCTGAATGCTGGCTGTTGCATTGACAAAAGCGAATGTTGATATTTGTACATCAAGGAAACTGGACCTACCTTACAACATTGTTAGGGAATGTACCTAATCATACCTTACTGATAAatgctgacgtgtgtgtgtgtgtaggcatatGATAACAACCATGCAATAAAAATGTGAATGTTGAGG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045130 keratan sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62060 lncRNA upstream 119734 50951733 ~ 50951962 (+) True G55731
TU62017 lncRNA upstream 179812 50890764 ~ 50891884 (+) True G55690
TU61989 lncRNA upstream 219092 50852281 ~ 50852604 (+) True G55664
TU61405 lncRNA upstream 254248 50810146 ~ 50817448 (+) True G55115
TU61386 lncRNA upstream 292127 50777910 ~ 50779569 (+) True G55101
TU62238 lncRNA downstream 17287 51092732 ~ 51094575 (+) True G55908
TU62296 lncRNA downstream 100189 51175634 ~ 51194020 (+) True G55963
TU62496 lncRNA downstream 163885 51239330 ~ 51239638 (+) True G56152
TU62500 lncRNA downstream 170513 51245958 ~ 51246251 (+) True G56156
TU62506 lncRNA downstream 179906 51255351 ~ 51255644 (+) True G56162
XR_005051360.1 mRNA upstream 78577 50991983 ~ 50993119 (+) True LOC118964313
XM_036979545.1 mRNA upstream 200349 50856580 ~ 50871347 (+) False c1h11orf49
XM_021604300.2 mRNA upstream 200349 50856582 ~ 50871347 (+) True c1h11orf49
XM_021604218.2 mRNA upstream 271316 50792197 ~ 50800380 (+) False LOC110524496
XR_005051364.1 mRNA downstream 79062 51154507 ~ 51155396 (+) True LOC118964319
XM_021604338.2 mRNA downstream 88632 51164077 ~ 51170344 (+) True acte1
XM_036979571.1 mRNA downstream 139385 51214830 ~ 51341633 (+) False shank2b
XM_036979569.1 mRNA downstream 156716 51232161 ~ 51341633 (+) False shank2b
XM_036979578.1 mRNA downstream 282843 51358288 ~ 51424303 (+) False LOC110524569
TU60888 other upstream 987700 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2177784 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2688439 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3046738 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3812798 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 374377 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 2590770 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2912695 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2969404 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3645743 54721188 ~ 54721463 (+) True G59963

Expression Profile