RNA id: XM_036979564.1


Basic Information

Item Value
RNA id XM_036979564.1
length 2692
RNA type mRNA
GC content 0.41
exon number 3
gene id zgc:101566
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51041431 ~ 51144745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atactgtatttgTATTACTGATACACAGTTACTTGGGATTGTTAATTGGATTCGTTTTAACGTTTCTTGACTTCGTGTTTGTAGTTTTGGATTATTTGTGCactttgacattttactgcactgttagaagGTAGTAAGATAAGCATTTCGCCGTTATAACATttgctaaactgtgtacgcgacaagtaaactttgatttgatttaataatgGACCATTGTGCTGCTCGTTGAATTATTTGATTCGATGCTACCCCCTTGCGACTGAAAATCATCACAAGTTAAAGAAGAAGAATTCTGTAAACATCCCAAACGTCACTTCCGGTTATTATTTTGACAGCAAAACACTGCAACATTTTGCAATACTAATCTCTGGTCCccattaaattgtattttttattttaacacCTTTTGTGTTTTTTGCGTCACATTTATTAGCTCATTTTACTTGTGTGGTGGAATTGGCAATATTCGGAAAGAGATCAGTATTCTGCTTCTAGCTAGCGGAAGATGAAGGTCCCGAGCGATGAAAATGAGGTGGTGGAGGAAGGCAGTAGCAGTTCAACACCAGTAGACAACTCCGACAACGAGGAAATTCCACCTTATCTACGCGAAGAACCTCCTGAAGACGGCGAGAAGGACCACCCTAAGACCGAGGCGGGGGTCATCTGGAGGGTGACCGGCGGTCTCTTCAACATGACCAGAGGGGCGGTCGGCGCGACATGGGGAGGCGTGGCCTGGGTGGGCTGTAAGAGCTATGACATCACCAAGACGGTGGTGACCAGCGTGCCGGCCGCCGGCGTGGGATTAGTCAAAGGGGGCGTTTCCGTGGTGACGGGAGGAGTTGGAGCAGTAGGGTCCGCAGTAGCCAGTAAAGTGACACCAAAGAAAAAGGATAAGTCGGATTAGGCCTAGACCCAACTACCACCCCAATCTATGCGTCCTTCATTATCTGTCTGCTGTGCATAGGATCCATCTGGTTACTGATGGTAACGATTCAGAGTTGAGATAAGCCCAAGTACCTTGGATTTCCACGTAAATCATTCAACGACATCAATGGGGAAACTTGCGTGAAAAGCCGAGTTAAGCTTGCGGATCTCAAGTCAGAATACTACCCTGAGGCAGCCATTACAGAGGGAATTTTATGGGATTTGTGACGATATAGGAAGGTTGAACTTACTGCCGATGTACTTCTGAGAGGGATCTCATGTTTTTGTGATTGACCTGGGTGTGGGAAGGGCATAATAATATGACGACCACGCACAATGTTTGTCATGCGTAAGAACAATTTGGTAGCGATTCAGCAAGGACACGTCTACACATTTCTCAAAGACTGGAGTTGATTTAAATTCTTCCAGTTGTATTATCTTTACGTTAGTATGAAAACAAAGTGAAAGGTACTTTTTACACAACTTAATTTCACCAGTTTGACATCGGTGATTGGAGAACACACACCAAAAACGACGTGTGTATGTGAAGATGTACAGAGTGCGTATTATAATAGATATGTGAATAAAAGGTACGTGGATCCTATTGATGCAGATAGAGAAGGTAGGAGAGGGACTTTGCAGTCTTGAAACTCCATTGCAActtggatttttttattttattgtacaACAGGTgaggggatttttttattttttttgagttGGAGACCTGTTAAATAAAGCGTGTTATTGCATAGAAACGGATCTAAAAAAATCCTGAAAGACACCTTTTTGTATACATGTTACTTATATCAGCAGAGGTCCTGGGGTGTTTAAAGAAATTAAGCACCATTTCACCACCAACACACGTACGTAAGGTCAAGGGTCATAGTTCATGCCTGCATggcaaatgtcaccctattccctttatagtgcattactttttaccagggccctcttgtttaaaagtagtgcgctatatagggaatagggtgccatgtgggactcATCCTATGTCATTCACTTGTATGGACTTTCCTCAAATCTATATATATGTGCCTACCTGTACAATGTAGATACATTAGATAGATAAGTACGGACATTCCCGGAGTATGAGGGCCAGTTGAAAACTAACCTGCTTTTTCTTTCCACGAATCCCACTTCTGGGTGCCAATATGTTTGGCATGAAAATGAGTTGACAAGATGCCAGAAACAGATCTGGGTACAGGCTAATTCATTTCCACATGGTTTACATTGTTACCATAGTGCTGAATTACTGTCCATTCTGATGAGACATTAGGTGTAcacttttttttgtatttcaatatTCACTAGAAAGAGAACACTCTTGGCATGGTATTTCCACGCCCTTACGTTAAGCATTGCATGCTTCAAGTAGTCGTTTTTCCCTTCTCCCTGTTTATTATTATGACAAGTCTTGCCTATTTCATTTGATGCTTTTTCCTCTTGTCCTGTCTATTTACTGTTTTCCTCATCTCTTACTTCTGCTAGTTAATATATGTATTGGGGACTCTGTTACTATCACCCGAtgtgtgttccaaatgacaccctgttccctatttagtgcagcacttttgaccagggcccataggggctttggtcaaaagtagtgcactatgtagggaatagggtgcaatttgggacgcatacCTGGACCTTTAAGACCAAGTAGATTTTTCTCTATGATAGAACTATTTTTGCAAAAACTGATGCTGTATTCTATAAATAAAACTACTCTGTATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62170 lncRNA downstream 98574 50993685 ~ 50993951 (-) True G55840
TU62085 lncRNA downstream 195694 50893317 ~ 50896831 (-) True G55755
TU62083 lncRNA downstream 200697 50890424 ~ 50891828 (-) True G55753
TU61990 lncRNA downstream 240113 50852206 ~ 50852412 (-) True G55665
TU61945 lncRNA downstream 278238 50767159 ~ 50814287 (-) True G55628
TU62465 lncRNA upstream 61814 51206559 ~ 51206794 (-) True G56122
TU62492 lncRNA upstream 86978 51231723 ~ 51233441 (-) True G56148
TU62618 lncRNA upstream 108140 51252885 ~ 51253108 (-) True G56270
TU62619 lncRNA upstream 108823 51253568 ~ 51253864 (-) True G56271
TU62674 lncRNA upstream 191899 51336644 ~ 51342245 (-) True G56326
LOC110532401 mRNA downstream 101127 50897530 ~ 50991398 (-) True LOC110532401
XM_021604286.2 mRNA downstream 204029 50871475 ~ 50888496 (-) True mapk8ip1a
XM_036979517.1 mRNA downstream 241857 50808713 ~ 50850668 (-) True LOC110532393
XM_036979523.1 mRNA downstream 242102 50808713 ~ 50850423 (-) False LOC110532393
XM_036979530.1 mRNA downstream 242979 50808713 ~ 50849546 (-) False LOC110532393
XM_036979616.1 mRNA upstream 334301 51479046 ~ 51491719 (-) True LOC110524590
XM_021604414.2 mRNA upstream 528808 51673553 ~ 51674973 (-) False LOC110524599
XM_021604448.2 mRNA upstream 706237 51850982 ~ 51886676 (-) False LOC110524618
XM_036979643.1 mRNA upstream 706237 51850982 ~ 51886676 (-) False LOC110524618
XM_021604493.2 mRNA upstream 847692 51992437 ~ 52100196 (-) False LOC110524646
TU61955 other downstream 300456 50777747 ~ 50792069 (-) False LOC110524514
TU61953 other downstream 308681 50777747 ~ 50783844 (-) False LOC110524514
TU61958 other downstream 308681 50777747 ~ 50783844 (-) True LOC110524514
TU61943 other downstream 325094 50765363 ~ 50767431 (-) True G55627
TU61709 other downstream 680397 50411634 ~ 50412128 (-) True G55408
TU62721 other upstream 255982 51400727 ~ 51404343 (-) False G56372
TU63128 other upstream 601872 51746617 ~ 51747220 (-) True G56764
TU64168 other upstream 1351153 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 1994713 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 2189979 53334724 ~ 53338387 (-) False LOC110525078

Expression Profile